Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02476 and BL02981
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:03
# Commandline: needle
# -asequence dna-align/BSNT_02476___ctaD.1.5803.seq
# -bsequence dna-align/BL02981___ctaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02476___ctaD-BL02981___ctaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02476___ctaD-BL02981___ctaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02476___ctaD
# 2: BL02981___ctaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1910
# Identity: 1426/1910 (74.7%)
# Similarity: 1426/1910 (74.7%)
# Gaps: 82/1910 ( 4.3%)
# Score: 5178.5
#
#
#=======================================
BSNT_02476___ 1 ATGTTGAATGCGCTTACAG-AAAAGC--GGACGCGCGGATCTATGCTTTG 47
.|||.|.|||||| || |||||| ||....|.||.|.||| |.||
BL02981___cta 1 ---GTGAGTACGCTTA-AGAAAAAGCAAGGTTTTGGGGCTGTAT--TATG 44
BSNT_02476___ 48 GGATTATTTGACGACGGTGGACCATAAAAAAATCGCGATTCTTTATTTAG 97
|||.|||||.|||||.||.||.||||||||.||.||.||.||||||||..
BL02981___cta 45 GGACTATTTAACGACTGTCGATCATAAAAAGATTGCCATCCTTTATTTGC 94
BSNT_02476___ 98 TGGCAGGGGGATTCTTCTTTCTTGTCGGGGGAATTGAAGCGATGTTTATC 147
|||..||.||.|||||||||.|..||||.|||||.|||||||||.|.|||
BL02981___cta 95 TGGGCGGCGGGTTCTTCTTTGTGCTCGGCGGAATCGAAGCGATGCTGATC 144
BSNT_02476___ 148 AGAATTCAGCT--TGCAAAGCCGGAAAATGCGTTTCTCAGTGCTCA--AG 193
||..||||||| || |..|||.|.|||| .|| ||| ||
BL02981___cta 145 AGGGTTCAGCTGATG--ATACCGAACAATG------ACA----TCATGAG 182
BSNT_02476___ 194 C--------ATATAATGAAGTAATGACTATGCACGGAACGACGATGATCT 235
| .||.||||||.|.|||||.||||||||.||.||||||||.|
BL02981___cta 183 CGGCGGGGTCTACAATGAAATCATGACGATGCACGGCACAACGATGATTT 232
BSNT_02476___ 236 TTCTGGCTGCGATGCCGCTCTTATTTGCCTTGATGAATGCGGTTGTGCCT 285
|.|||||.|||||||||||.||.||.||.||||||||.||.||.||.||.
BL02981___cta 233 TCCTGGCGGCGATGCCGCTGTTGTTCGCATTGATGAACGCCGTCGTTCCG 282
BSNT_02476___ 286 TTGCAGATCGGGGCTCGGGACGTTTCGTTTCCATTTTTAAACGCGCTTGG 335
.|||||||.||.||.|||||.||..||||||||||.||.|||.||||.||
BL02981___cta 283 CTGCAGATAGGCGCGCGGGATGTCGCGTTTCCATTCTTGAACTCGCTCGG 332
BSNT_02476___ 336 TTTTTGGCTCTTCTTTTTCGGGGGCAT-TTTCTTAAATCTAAGCTGGTTT 384
.||.|||||.||..|||||||.||||| |||| |.|||.|||||||||||
BL02981___cta 333 CTTCTGGCTGTTTCTTTTCGGCGGCATCTTTC-TGAATTTAAGCTGGTTT 381
BSNT_02476___ 385 TTGGGCGGAGCGCCAGATGCGGGCTGGACGTCATATGCCTCACTTTCGCT 434
|||||.||.||.||.|||||.|||||||||||.|||||.||.|||||.||
BL02981___cta 382 TTGGGAGGGGCACCCGATGCCGGCTGGACGTCTTATGCGTCGCTTTCCCT 431
BSNT_02476___ 435 TCATTCTAAAGGGCACGGCATAGACTTTTTCGTCCTCGGACTCCAAATAT 484
||||||..||||||||||.||.||.||.|..||.|||||.||.|||||..
BL02981___cta 432 TCATTCCGAAGGGCACGGGATCGATTTCTATGTTCTCGGTCTGCAAATTG 481
BSNT_02476___ 485 CGGGGCTCGGGACGCTGATAGCCGGGATTAACTTTTTGGCCACGATTATC 534
|.|||.||||.||||||||.|||||||||||||||.|.||.|||||.|||
BL02981___cta 482 CCGGGATCGGTACGCTGATTGCCGGGATTAACTTTCTCGCGACGATCATC 531
BSNT_02476___ 535 AACATGAGGGCTCCGGGCATGACGTATATGAGGCTGCCTTTGTTTACATG 584
|||||||||||.|||||||||||.||.|||||||||||..|.||.|||||
BL02981___cta 532 AACATGAGGGCGCCGGGCATGACATACATGAGGCTGCCGCTTTTCACATG 581
BSNT_02476___ 585 GACGACATTTGTGGCCTCGGCATTGATTTTGTTCGCGTTTCCGCCGCTTA 634
|||||||||.||.||.|||||.||||||||||||||||||||||||||.|
BL02981___cta 582 GACGACATTCGTCGCTTCGGCTTTGATTTTGTTCGCGTTTCCGCCGCTGA 631
BSNT_02476___ 635 CGGTTGG-ATTG-GCACTGATGATGCTGGATCGGCTGTTCGGCACCAATT 682
|.||.|| |||| ||.|| ||||||||||.|||.|||||||.||.|..|
BL02981___cta 632 CCGTAGGCATTGCGCTCT--TGATGCTGGACCGGTTGTTCGGAACGAGCT 679
BSNT_02476___ 683 TCTTTAATCCGGAGCTTGGCGGGAATACGGTCATTTGGGAGCATTTATTT 732
|.||.||||||||..|.|||||.||||||.||||||||||||||.|.||.
BL02981___cta 680 TTTTCAATCCGGAATTAGGCGGAAATACGATCATTTGGGAGCATCTGTTC 729
BSNT_02476___ 733 TGGATCTTTGGCCATCCGGAGGTTTATATCTTAATTTTGCCTGCATTCGG 782
|||||.||.||.||.||.||.||||||||..|..|..|.||.||.|||||
BL02981___cta 730 TGGATTTTCGGACACCCTGAAGTTTATATTCTCGTACTCCCGGCGTTCGG 779
BSNT_02476___ 783 TATTTTTTCAGAGGTCATCCCTGTGTTTGCCAGAAAGCGTTTGTTTGGGT 832
.||||||||.||..||||.||.||.|||||.|||||..|..||||.||.|
BL02981___cta 780 CATTTTTTCGGAAATCATTCCGGTTTTTGCGAGAAAAAGGCTGTTCGGCT 829
BSNT_02476___ 833 ACTCATCAATGGTTTTTGCCATCGTGCTCATCGGCTTTTTGGGCTTTATG 882
|.||.||||||||.|||||.|.|||..|.|||||||||||.|||||.|||
BL02981___cta 830 ATTCTTCAATGGTATTTGCAACCGTATTGATCGGCTTTTTAGGCTTCATG 879
BSNT_02476___ 883 GTTTGGGTGCATCACATGTTTACGACAGGTCTCGGCCCAATTGCAAATGC 932
|||||||..||.||.||||||||.||.||.|||||.||..|.|||||.||
BL02981___cta 880 GTTTGGGCTCACCATATGTTTACAACGGGACTCGGGCCTGTGGCAAACGC 929
BSNT_02476___ 933 GATTTTTGCGGTTGCAACAATGGCTATCGCGATTCCGACCGGGATTAAGA 982
.|||||||||||.||.||.|||||.||.||..|.|||||.||.|||||.|
BL02981___cta 930 CATTTTTGCGGTGGCGACGATGGCCATTGCCGTCCCGACTGGTATTAAAA 979
BSNT_02476___ 983 TTTTTAACTGGCTGTTGACGATTTGGGGAGGAAATGTGAAGTATACAACC 1032
|.||.|||||||||.|.|||...|||||.||.|...|.||||.||||||.
BL02981___cta 980 TCTTCAACTGGCTGCTCACGGCGTGGGGCGGGAGCATCAAGTTTACAACG 1029
BSNT_02476___ 1033 GCTATGCTGTATGCTGTCTCATTTATTCCATCCTTTGTGCTCGGCGGTGT 1082
.|.|||||.||.||..|.||.|||||.||..|.|||||..|.|||||.||
BL02981___cta 1030 CCGATGCTTTACGCGATATCCTTTATCCCGACGTTTGTTATGGGCGGGGT 1079
BSNT_02476___ 1083 GACGGGAGTCATGCTGGCAGCTGCTGCGGCTGATTATCAGTTTCATGATA 1132
|||.||.||||||||.||.||.||..|||||||.||||||||.|||||.|
BL02981___cta 1080 GACAGGCGTCATGCTTGCTGCCGCACCGGCTGACTATCAGTTCCATGACA 1129
BSNT_02476___ 1133 CGTATTTTGTGGTTGCACACTTCCACTACGTCATTATTGGCGGTGTTGTA 1182
||||.|||||.||.||.||||||||.||||||||.||.|||||.||.||.
BL02981___cta 1130 CGTACTTTGTCGTGGCCCACTTCCATTACGTCATCATCGGCGGAGTGGTG 1179
BSNT_02476___ 1183 TTCGGCCTTTTAGCCGGTGTTCATTTCTGGTGGCCGAAAATGTTCGGTAA 1232
||||.|.|..|.|||||.|.|||||.|||||||||||||||||||||.||
BL02981___cta 1180 TTCGCCATCCTCGCCGGAGCTCATTACTGGTGGCCGAAAATGTTCGGGAA 1229
BSNT_02476___ 1233 AATTCTGCATGAAACGATGGGGAAAATTTCATTTGTATTGTTTTTTATCG 1282
|||.|||...|||.||.||||.|||||..|.||||||.|.|||||.||||
BL02981___cta 1230 AATGCTGAGCGAAGCGTTGGGCAAAATAACGTTTGTACTCTTTTTCATCG 1279
BSNT_02476___ 1283 GCTTTCACCTCACGTTTTTCATTCAGCATTTTGTCGGCTTAATGGGG-AT 1331
|.||.|||||.|||||.|||||.|||||||...||||.|| .||||| ||
BL02981___cta 1280 GGTTCCACCTGACGTTCTTCATCCAGCATTGGCTCGGATT-GTGGGGAAT 1328
BSNT_02476___ 1332 GCCGCGCCGGGTTT----ATACGTTTTTGCCAGGA--CAGGGTCTGGAAA 1375
||||.|.||.||.| |||| ||||| || |||||..|.||.|
BL02981___cta 1329 GCCGAGACGCGTGTTCACATAC----TTGCC--GAATCAGGGATTTGACA 1372
BSNT_02476___ 1376 CCGGC-AACTTGATCAGTACAATTGGGGCGTTTTTTATGGCGGCAGCTGT 1424
.||| |||.||||||||.||||.||.||..|.|||||||||||.||.||
BL02981___cta 1373 -TGGCGAACCTGATCAGTTCAATCGGAGCTGTGTTTATGGCGGCTGCGGT 1421
BSNT_02476___ 1425 TATTCTTCTGCTGGTCAATGTCATATGGACATCGGTAAAAGGTGAATATG 1474
.||..|.||..||.|||||.|.||...|||..|.|..|||||.|||.|.|
BL02981___cta 1422 CATCATACTCGTGATCAATATTATCGTGACGACTGCCAAAGGGGAAAAAG 1471
BSNT_02476___ 1475 TAGG-TGCTGATCCATGGCATGACGGACGTACGCTGGAATGGACCGTTTC 1523
|.|| .|| |||||.||||||||||||.|.|||||.||.|||.|||||||
BL02981___cta 1472 TCGGCAGC-GATCCTTGGCATGACGGAAGAACGCTTGAGTGGGCCGTTTC 1520
BSNT_02476___ 1524 TTCACCGCCGCCGGAGTATAACTTTAAACAGCTTCCTTTTGTCAGAGGAC 1573
|||.|||||.||.||.||.|||||.||||||||.|||||.||||||||.|
BL02981___cta 1521 TTCGCCGCCTCCTGAATACAACTTCAAACAGCTGCCTTTGGTCAGAGGCC 1570
BSNT_02476___ 1574 TTGATCCGCTT--TGGATCGAGAA--------GCAGGCAGGACACAAATC 1613
||||| |||| ||||||||.|| |||.|||| ||
BL02981___cta 1571 TTGAT--GCTTTATGGATCGAAAAAAGAGCCGGCAAGCAG--------TC 1610
BSNT_02476___ 1614 AATGA-CGCCGGCGGAACCGGTTGATGATATTCATATGCCAAACGGCTCA 1662
||||| |||| |||||.|||.||.|.||.||.||||||||||||||.||.
BL02981___cta 1611 AATGACCGCC-GCGGAGCCGCTTCAGGACATCCATATGCCAAACGGATCG 1659
BSNT_02476___ 1663 ATCCTGCCGCTCATCATTTCCTTCGGCCTTTTTGTCGCAGCGTTCGGGCT 1712
||.||.|||.|||||||.||..||||.||.|||.|..|.||.|||||..|
BL02981___cta 1660 ATTCTTCCGTTCATCATGTCACTCGGGCTGTTTATATCCGCCTTCGGCTT 1709
BSNT_02476___ 1713 GCTGTACAGAAGTGATTACGCTTGGGGCCTGCCAGTGATCTTTATCGGGC 1762
..|||||.|.|..||.|..||.|||||.|||||.||.||..|.||||||.
BL02981___cta 1710 TATGTACCGGACGGAATTTGCCTGGGGGCTGCCTGTCATTCTGATCGGGT 1759
BSNT_02476___ 1763 TCGGCATCACATTTATTACGATGCTGCTTCGTTCAGTAATTGATGATCAC 1812
|.||.|||||.||..|||.||||||.||.||.||.|||||||||||.|||
BL02981___cta 1760 TAGGGATCACGTTATTTATGATGCTTCTCCGGTCTGTAATTGATGACCAC 1809
BSNT_02476___ 1813 GGCTATCATATTCATAAAGAGGAACTGCCGAACGAT---GATAAAGGGGT 1859
||.||.||||||||||||||.||.|||..|.|.||| ||.||||||||
BL02981___cta 1810 GGGTACCATATTCATAAAGAAGATCTGATGGATGATGACGACAAAGGGGT 1859
BSNT_02476___ 1860 GAAGGCATAA 1869
||||||||||
BL02981___cta 1860 GAAGGCATAA 1869
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