Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02450 and BL02966
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_02450___ylaA.1.5803.seq
# -bsequence dna-align/BL02966___ylaA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02450___ylaA-BL02966___ylaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02450___ylaA-BL02966___ylaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02450___ylaA
# 2: BL02966___ylaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2272
# Identity: 1187/2272 (52.2%)
# Similarity: 1187/2272 (52.2%)
# Gaps: 689/2272 (30.3%)
# Score: 2469.0
#
#
#=======================================
BSNT_02450___ 1 TTG---GAGTTATTCAGTCATTATGTATTGCATTTCGAACGTTATTTTAT 47
||| ||..||||.|||.|||||||..|.|||||.||||||||||||.|
BL02966___yla 1 TTGATCGAACTATTTAGTGATTATGTGCTCCATTTTGAACGTTATTTTGT 50
BSNT_02450___ 48 ATTAAGCAGACAAAGCACCCTGCTGATTCAATGGTCAATTGTTGTTCTGG 97
.|||||||||||.||||..||..|.|||||.|||| .|.||.
BL02966___yla 51 TTTAAGCAGACAGAGCATGCTTGTCATTCAGTGGT---------GTGTGA 91
BSNT_02450___ 98 C-GGGCTTATATCTTTTG------GTG-CA--TCATCCCAAAATAAACCT 137
| ||.|||.| .|||||| ||| || ||||||.|||.| .|
BL02966___yla 92 CAGGCCTTGT-CCTTTTGTATGCCGTGTCATTTCATCCAAAAGT----GT 136
BSNT_02450___ 138 GCAGCGCACAATGTTCTTGGCGGGTGTTATGT--TGC--GGATTGT---- 179
|||| || ||||..|.||.|.| ||| |.||.||
BL02966___yla 137 GCAG-GC-----------GGCGCCTCTTTTTTTATGCAGGCATCGTTCTC 174
BSNT_02450___ 180 --GCTG---CTGGCGGGAG---TGTCTGTTGAACTTATTCACCAGGTGCA 221
|||| ||||..||.| |.||..|||||.|...||||||..||.|
BL02966___yla 175 AGGCTGATACTGGTTGGCGCCCTTTCGTTTGAATTGGCTCACCAAATGAA 224
BSNT_02450___ 222 A------------TCAACAAACTTCACCAGCGCTTACTTAAGAGAGGACG 259
| |||| |||.| |||.|| ||||
BL02966___yla 225 AGCCGCTGAGTTTTCAA--------ACCTG----TACATA------GACG 256
BSNT_02450___ 260 GAAAAGA---ACTGTTGCCGCTGCTGCATTTTTTGTTATACGGATATGTG 306
.|.|||| .||..||||..|..||||.||||||.|.|.|||.|||.|.
BL02966___yla 257 AACAAGATGCGCTTCTGCCTTTTATGCAGTTTTTGCTGTTCGGCTATATT 306
BSNT_02450___ 307 CTGC-TGACGGCTTTTCACTATATGTTGATGC-CGCGTGATCATGGCGGA 354
.||| ||.| .|||||||.||||||.|||..| |||| ||..|.||.||.
BL02966___yla 307 TTGCTTGTC-TCTTTTCATTATATGATGACACTCGCG-GAAAAAGGGGGC 354
BSNT_02450___ 355 AAGGGTAAGTTTTATACGTTCGACCTTGC--------CGTTGTCAGTTTG 396
|||||...|||||.|.|.||.|||.|||| ||.||.|..|||.
BL02966___yla 355 AAGGGGCTGTTTTTTGCATTTGACATTGCGGTGATGGCGATGCCGCTTTT 404
BSNT_02450___ 397 CCAATCGTACAAATGATATTCAGTTTCTTT---ACGTATTGGAAGGAAAA 443
|||||| |.|.||||| |||| .|.||||.||||| ||
BL02966___yla 405 CCAATC--------GCTGTTCAG---CTTTGCCGCCTATTTGAAGG--AA 441
BSNT_02450___ 444 TCCGGA-TGGAGTCGAGCCAGTTGCATT--CG-TGTTTCTGTTTTTCATT 489
|..||| .|||| ||||..|..|.||| || |..|||||||.||.|||
BL02966___yla 442 TTTGGAGCGGAG--GAGCTTGAAGAATTGCCGCTCGTTCTGTTGTTGATT 489
BSNT_02450___ 490 -----ATTACTCTTTCTATTG----TGTTGA-ATG-TTGTGTTTTTCAAG 528
|.||| .| ||.||| .|| |||| |||||| ||
BL02966___yla 490 GTCGGAATAC---------CGGGACTGATGATCTGCTTGT-TTTTTC-AG 528
BSNT_02450___ 529 CTGTATTGGAGAACAAA----TAAG-----ATTTTACTAGGCTTATTTTA 569
||.|||||||.||.||| ||.| .|||| |.|| |||||
BL02966___yla 529 CTTTATTGGAAAAGAAACCGTTACGTTCTCCTTTT-----GATT-TTTTA 572
BSNT_02450___ 570 TACGCTGATTATCGGACTGCTTGTCTTGCTGCTTGCGCCATATCCCAATC 619
||...|||..||||| |.|.|| ||| .|||
BL02966___yla 573 TATTGTGACGATCGG-CGGTTT---------CTT------------CATC 600
BSNT_02450___ 620 AAATCTCAAAAGATTATGGTGCAGTAATGCCATATACGATTTATT----- 664
| |||||.| ||| ||||||.||.||
BL02966___yla 601 A------AAAAGCT--TGG--------------ATACGAATTTTTTCCGC 628
BSNT_02450___ 665 ------------TGGCAATGGCGGGATTTTTGATGAGCTATCATCTGTTC 702
||.|||||...||.|||.|.||||..|||||..||.|.
BL02966___yla 629 TGAACGTATTTCTGACAATGATCGGTTTTCTTATGACATATCACTTGCTG 678
BSNT_02450___ 703 CAAAAGTCAGGAAAG-----GTTTATGTGCGTGTGAATAAGTGGGT---- 743
.|..|.||..||||| |||.||| ||| |||.|.||
BL02966___yla 679 AATGACTCGAGAAAGCCTTTGTTGATG-----GTG---AAGCGTGTTTTA 720
BSNT_02450___ 744 GACGATGG--CTGTCATGGTGTTTTTTGTCCTGCTGT----TAAATCCGA 787
|.||..|| |.|.| ||.|||| ||..||| | |.|||||..
BL02966___yla 721 GCCGCGGGCACCGCC-----GTATTTT-TCACGCT-TCACCTCAATCCTT 763
BSNT_02450___ 788 TATATAACATAGGAACG---GCTGCTTTCGCTGTATCAAAACCGATAAAT 834
|.||.||..|.| || ||.|||||..|..|.|||.|.||| .|..|
BL02966___yla 764 TTTACAATTTGG---CGGATGCCGCTTTTACAATCTCACACCCG-GAGGT 809
BSNT_02450___ 835 GTC---CATGATTCAT-TCAATTATGTCGGGGAGCACATTTCATCAG--- 877
.|| |.||.||.|| .|||| |.||| ||...|||| |
BL02966___yla 810 TTCAGACGTGGTTGATGCCAAT--TTTCG----GCCTGTTTC----GGTT 849
BSNT_02450___ 878 -AAAAAGCGGAACAGATACTAAAGTCA-----TTTTTTCCTACGGATGAA 921
||.|||||.|.||| ||| |||| ||||||||.||.|| ||
BL02966___yla 850 AAAGAAGCGAAGCAG--ACT---GTCAGCTCGTTTTTTCCGACAGA-GA- 892
BSNT_02450___ 922 ACACTT----TATTTG-CACGATACAAACATGGATGTGCATTATTTCTAC 966
.||| |||||| || |.|||.|||..||||.|.|||.|..|.||
BL02966___yla 893 --GCTTTATCTATTTGTCA-GCTACCAACCAGGATTTTCATAACGTTTA- 938
BSNT_02450___ 967 TCATTTGAAA--GCAAGAGTTATAAAGCTGAGGTAGATGAAGTATCGCAG 1014
||||||.||| |.|||| |||..|.||.||.||.|| |.|
BL02966___yla 939 TCATTTCAAAACGAAAGA-TTACGATGCGGACGTTGA----------CGG 977
BSNT_02450___ 1015 CTGATTCGTAATTATGAATACTTA-------CAAAAAGCGCAT---GGGA 1054
|||....|.|||.||.|..|.||| ||||||..||.| ||||
BL02966___yla 978 CTGGACGGGAATGATCACCAATTATCACAATCAAAAAAAGCCTAGCGGGA 1027
BSNT_02450___ 1055 AAAAGCTAACGAATCAGGAGTA---CAAGCGAAAGTCCATCGC--TTTCC 1099
|.|..||..|...|||||..|| |||||| |||.| .|| ||||
BL02966___yla 1028 ATATCCTGTCCGGTCAGGCATATATCAAGCG---GTCGA-AGCAATTTC- 1072
BSNT_02450___ 1100 TTGAGCG-ACACGGACGTG----TGTTACATAAGGATCATATCGAAACAA 1144
|.||.| ||||||.||.| || ||| |.||.|||.|..|||
BL02966___yla 1073 -TAAGGGAACACGGCCGCGAACTTG--ACA-----AACAAATCAAGGCAA 1114
BSNT_02450___ 1145 AGGT-ATCTCAAGAAGACGGCCA---GACAGTCGTACGTATTTACC-TGA 1189
|||| |.| |..||.||||||.| .||.||.|.| .|||||| |||
BL02966___yla 1115 AGGTCAGC-CGTGATGACGGCGAAGCTACTGTTGAA---TTTTACCGTGA 1160
BSNT_02450___ 1190 -----AAAATCAACTTCATAAAAAAGATCATGCTGATGATGGCGCGGTAT 1234
|..||| |..||..|||..|| ||| |||
BL02966___yla 1161 AGGCGAGGATC-----CTGAATTAAGCACA-----ATG-TGG-------- 1191
BSNT_02450___ 1235 TTTA-TTGGGAAAAGGAAACCTTAATGGGGTTTAGTGAAGATCCTTCGAT 1283
|||| ||||...|||||.||..|.|||||.||...|||.||..|.||..|
BL02966___yla 1192 TTTACTTGGCGGAAGGAGACTCTGATGGGATTCCATGAGGACGCGTCTGT 1241
BSNT_02450___ 1284 TTATCAGCTTGACTCTCTTCTGCATGTTCATATAAC-AGAACAAAAC--- 1329
||| |||||| |.|.|.| .||||.||.|
BL02966___yla 1242 TTA-CAGCTT-------------------AGAAAGCGTGAACCAAGCCCG 1271
BSNT_02450___ 1330 --ATTC-----ACGATA---------AAGTGGAA--CAAATGTTTACAG- 1360
.||| |.|||| .|||.||| | ||.||..|
BL02966___yla 1272 CGTTTCTGGTGAGGATATCGAGCGGGGAGTTGAAGCC----GTCTATCGT 1317
BSNT_02450___ 1361 -CGCTGAACATA------TCAAAACAGCCTTATCAGATCACTGATATTGA 1403
.||||..|||| ||| .||||||.|.|.||.||||||||
BL02966___yla 1318 AAGCTGGGCATACCCGTCTCA------TCTTATCGGCTGACAGATATTGA 1361
BSNT_02450___ 1404 ------AAGC---GACAGCCT--GCTCGG--------AAGCATGGTGAGA 1434
|..| ..|||||| .||||| || ||| |.|
BL02966___yla 1362 TTTATTATTCCCATTCAGCCTCAACTCGGCATCCATCAA-CAT----AAA 1406
BSNT_02450___ 1435 GTTGAAACAAAAGATGGAATTGTATTGGAGTTTGATGGAGAATCCGGTA- 1483
| ||||..||.|||||.|...||||||| ..|.||.|||
BL02966___yla 1407 G-----ACAAGTGACGGAATGGGGATGGAGTT-------CCACCCTGTAA 1444
BSNT_02450___ 1484 ---GT---TTACACAG-TCTCTCGATTCCAA---TGAAA----------- 1512
|| ||| ||.| |.|.||||| ||| |||||
BL02966___yla 1445 CAGGTGCATTA-ACGGCTATTTCGAT--CAAATCTGAAAGCGCCTTGCCT 1491
BSNT_02450___ 1513 ----------AAG-----GAAA---------TTTCA-------------- 1524
||| |||| |||||
BL02966___yla 1492 TATCGCGGACAAGAGCTTGAAAAACGCTTGCTTTCATTATTTGATCAAGA 1541
BSNT_02450___ 1525 ----------CTGACTAACAGCCGGCTGCAGCG-GCAGGTATTAACGGTC 1563
|||| || ||.| |.||.||..||.|
BL02966___yla 1542 CATTTCCAATCTGA--AA-----------AGGGTGGAGTTAGAAAAG--- 1575
BSNT_02450___ 1564 TTCGATGCTGATGTATCAGAAATGAAGAAAAAAAGCAGTCAGAGTGACAT 1613
||| ||||| ||||.|..||||||| |||..|..||
BL02966___yla 1576 ---GAT-CTGAT-----AGAATTTCAGAAAAA--------AGAAAGCGAT 1608
BSNT_02450___ 1614 GGTGATGT---ATACTGATTCTTCT----------AAAACAT-ATGAG-- 1647
|.|| ||| ||||.| ||| .|||||| |.|||
BL02966___yla 1609 GCTG-TGTTAAATACGG-----TCTGGACCATGACGAAACATGAAGAGGG 1652
BSNT_02450___ 1648 ---TTTTTTGAAGATCAAGGTCAGCTAAACGTTTATGTATACAGC----G 1690
||.|.|| |.|||.||..|||..||| .|.|.||| |
BL02966___yla 1653 AGCTTATCTG------ACGGTGAGAAAAAACTTT---CAAAAAGCAGATG 1693
BSNT_02450___ 1691 ATACACCTAATCAGTCATTCCCCTATACGTATCGTAATGGAACATTGGCT 1740
|.|.||| ||||||.|||||| ||.
BL02966___yla 1694 AAAAACC------------CCCCTACACGTAT---------------GCA 1716
BSNT_02450___ 1741 TAC---GAAAAGGTAGCTTCTCTA-----TATCAGGATGTTATTTACAAA 1782
.|| ||||| |||||.|| | |.||.|.|.|.||| ||||
BL02966___yla 1717 GACGGGGAAAA---AGCTTTTC-AGAAAGTGTCTGAACGCTAT---CAAA 1759
BSNT_02450___ 1783 AAG-----------CGTATGCGTCCGA------TTATCG-TTCAAAGA-G 1813
||| |.||..||..||| |.|||| ||| ||| |
BL02966___yla 1760 AAGGGCTGGTCTATCATAAACGGACGAAGCTTGTAATCGTTTC--AGACG 1807
BSNT_02450___ 1814 AGGATGAA---CGGCATTATGCATGGCTGATCATTATTCAGCCGTTTGGT 1860
.||||.|| .|.|.||||||.|||||..||||.||.||||||||.||.
BL02966___yla 1808 GGGATCAAAAGAGCCGTTATGCGTGGCTTGTCATCATCCAGCCGTTCGGC 1857
BSNT_02450___ 1861 TCAAATCGCCATGATGCCTATGTAGTGGATGGAGAAACACAAGAGGTGAA 1910
||||||...|||||.||.||..|.||.||||..||.|||.|.||||||||
BL02966___yla 1858 TCAAATGAACATGACGCATACTTGGTTGATGCCGAGACAGATGAGGTGAA 1907
BSNT_02450___ 1911 AAGTCTTTATG---AATCATAA 1929
|..|.||.||| |||.|
BL02966___yla 1908 ACATTTTGATGACAAATGA--- 1926
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