Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05935 and BL02959
See
Amino acid alignment /
Visit
BSNT_05935 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence dna-align/BSNT_05935.1.5803.seq
# -bsequence dna-align/BL02959___cimH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05935-BL02959___cimH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05935-BL02959___cimH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05935
# 2: BL02959___cimH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1368
# Identity: 508/1368 (37.1%)
# Similarity: 508/1368 (37.1%)
# Gaps: 705/1368 (51.5%)
# Score: 1759.5
#
#
#=======================================
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 1 ATGGAAGCAAAAACAAAGGTACAACATATACCGATTCAAACAACAAAAGA 50
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 51 ACAGGATGAAAATTTTTTTGCAAGAGCAATGAATGTTAAAATCGGCATCA 100
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 101 TTCCGCTGCCCGTATATTTGCTGCTCTTCGCTTTGATTGTGACGTTTGTC 150
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 151 TATATGCACGATCTGAAAAGCGACATTTTAACAGCCATTGCGGTTACGGG 200
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 201 CTTTTTCGGATTCACCTTCGCCCAAATCGGAAAGTCGCTGCCGCTTCTTC 250
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 251 GTTCTGTCGGCGGTGCCGCTATACTTGCGACGTTTATTCCTTCAGCTATC 300
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 301 GTCTATTACCATCTCATTCCCGATGACATTATCAAATCAACAACTGAATT 350
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 351 TACAGAAAACTCAAACTTTCTTTATTTGTTCATCTCTGCCATTGTAGTCG 400
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 401 GAAGCATTTTAGGAATGAAAAGAGAAACGCTGGTCAGGGCGTTCATTAAA 450
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 451 ATTTTTATTCCTCTGATTGCAGGGACCATTGCTGCAGCGGCAGTCGGTCT 500
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 501 GGCGGTCGGTACAATGCTCGGCCTCGGATTTCAGCATACGCTGCTGTACA 550
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 551 TTGTAATTCCGATCATGGCCGGAGGGGTTGGCGAGGGAGCTATTCCGCTG 600
BSNT_05935 0 -------------------------------------------------- 0
BL02959___cim 601 TCCATCGGCTATTCGGAAATCATGCACATGTCACAAGGGGAAGCTTTTGC 650
BSNT_05935 1 -------------------ATGCTGGGCAGCTTGTGCGCGATTATTCTAG 31
|||.|.||.|||||..||||..|.|||.|..
BL02959___cim 651 ACTTGTCATTCCTTCCATAATGTTCGGAAGCTTAAGCGCCGTCATTTTGT 700
BSNT_05935 32 CGGGATTGCTGAACCGAATCGGAAAGAAAAAACCGGAATGGACAGGCAAC 81
|.|||.|..|.||...||||||.||||||||.||.||||.||||||||||
BL02959___cim 701 CCGGAATTTTAAATGTAATCGGGAAGAAAAAGCCTGAATTGACAGGCAAC 750
BSNT_05935 82 GGCAAAGTGGACCGCTCCGA-AGAAGAGTC-CCCTG-CGCTGGAGGAATC 128
||.|||||.|||||.|..|| ||..|.|.| |.|.| ||||.|| ||.|
BL02959___cim 751 GGAAAAGTTGACCGTTTTGATAGCGGGGACGCACAGCCGCTCGA--AAGC 798
BSNT_05935 129 ----ACAAAGCGGAC--AGCAAA---TGTTCAACCTTTCTTTATTTGCGG 169
||||| ||| || ||| |.||.||.|||||....||||||.
BL02959___cim 799 CGCGACAAA---GACAAAG-AAAGCCTTTTTAATCTTTCCCACTTTGCGT 844
BSNT_05935 170 CAGGCGGTATCCTTGCTGTTTCTTTATACTTAGTCGGCATGCTCGCTCAC 219
||||.||.||.||.||.||.||.|||||.||.|||||.|||||..|.||.
BL02959___cim 845 CAGGAGGCATTCTCGCCGTCTCATTATATTTGGTCGGTATGCTTTCACAT 894
BSNT_05935 220 GATTTTTTCGGTTTTCCGGCACCCGT--TGCCATGCTGTTACTGGCTGTT 267
||.||.|||||.|||||.|||||||| || |||||..|.|||||||||
BL02959___cim 895 GACTTGTTCGGATTTCCAGCACCCGTCATG--ATGCTTCTGCTGGCTGTT 942
BSNT_05935 268 CTAATCAAGCTGTTCAGATTGGTGCCTGCCTC-----AATT--GAAAATG 310
....|.||.|||| ||.|| |||.||| |||| |||||.|
BL02959___cim 943 GCCCTGAAACTGT-----TTCGT--CTGGCTCCGGCGAATTTGGAAAACG 985
BSNT_05935 311 GCGCGTTTGGAGTGTCCCGCTTCTTTTCAACAGCTGTGACCTACCCGCTT 360
||||.|..||.|||||.||||||||||||||.||||||||.||.|||||.
BL02959___cim 986 GCGCCTACGGCGTGTCGCGCTTCTTTTCAACTGCTGTGACATATCCGCTG 1035
BSNT_05935 361 CTCTTTGCGATTGGGGTATCCATGACGCCGTGGGACAAGCTTGTCGCCGC 410
||.|||||.|||||.||.||||||||.||||||||||||||..||||.||
BL02959___cim 1036 CTTTTTGCCATTGGCGTCTCCATGACACCGTGGGACAAGCTGATCGCAGC 1085
BSNT_05935 411 TTTTAACCTCAGCAATATTATTACGATTCTGTCTGTCGTTGTGACCATGA 460
||||||..||..|||||||||||||||..|.||.|||||.||.||.||||
BL02959___cim 1086 TTTTAATATCGCCAATATTATTACGATCGTATCCGTCGTGGTCACGATGA 1135
BSNT_05935 461 TGGCCGTTGGCTTCTTCACTGGAAAATGGCTGAACATGTATCCGATTGAA 510
|.|||||.|||||.||..|.||.||.||||||||.|||||.|||||.|||
BL02959___cim 1136 TAGCCGTCGGCTTTTTTGCAGGGAAGTGGCTGAATATGTACCCGATCGAA 1185
BSNT_05935 511 ACCGCCATTATCAATGCGTGCCATTCTGGACAAGGCGGCACCGGAGACGT 560
|||||.||.||||||||.||||||||.||.||.||.||||||||.|||.|
BL02959___cim 1186 ACCGCGATCATCAATGCTTGCCATTCCGGCCAGGGAGGCACCGGCGACAT 1235
BSNT_05935 561 CGCTATTTTAAGCGCGGCGGAAAGGCTTGAGTTGATGCCGTTCGCCCAGG 610
|||.|||.|.|||||.||.||..|.||.|||.|.||||||||.|||||||
BL02959___cim 1236 CGCAATTCTCAGCGCCGCAGAGCGCCTCGAGCTTATGCCGTTTGCCCAGG 1285
BSNT_05935 611 TATCTACCCGCATCGGGGGCGCGATCACAGTGTCCTTAACCTTATTGCTG 660
|.||.||..|.|||||.||.|||||.||.||..|..|.||..|..|||||
BL02959___cim 1286 TGTCCACAAGAATCGGCGGAGCGATAACCGTTACGCTGACGCTGCTGCTG 1335
BSNT_05935 661 CTTCACCAGTTTTATTGA 678
||...|||||||||||||
BL02959___cim 1336 CTAGCCCAGTTTTATTGA 1353
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.