Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06077 and BL02957
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:05
# Commandline: needle
# -asequence dna-align/BSNT_06077.1.5803.seq
# -bsequence dna-align/BL02957___yxdM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06077-BL02957___yxdM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06077-BL02957___yxdM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06077
# 2: BL02957___yxdM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1985
# Identity: 1168/1985 (58.8%)
# Similarity: 1168/1985 (58.8%)
# Gaps: 409/1985 (20.6%)
# Score: 3405.5
#
#
#=======================================
BSNT_06077 0 -------------------------------------------------- 0
BL02957___yxd 1 ATGACCTTTCTTCAGTTCGCTTATAAAAACGTCGTCCGGAATAAAAGAGC 50
BSNT_06077 0 -------------------------------------------------- 0
BL02957___yxd 51 CTATCTCGCCTTCTTTTTAAGCAGCTCATTTTCAGTGATGATTTTTTTCA 100
BSNT_06077 0 -------------------------------------------------- 0
BL02957___yxd 101 CATTTGCGATGTTTTTGTTCCACCCCGCTTTAGAGGAAGGCTACTTAAAC 150
BSNT_06077 1 ------------------------------------ATGATCTTTG-TTT 13
|||||.||.| .||
BL02957___yxd 151 ACCATTGCAAAACGGGGGTTGTCGGTGGCTGAATGGATGATTTTCGCCTT 200
BSNT_06077 14 TTTCTTTCTTATTTGTTCTGTATTCGGTTAACGCATTTTTGAAATCGAGA 63
||.|.||| |.|||||.||.|||||.||.|||||.|||.|.||.||||||
BL02957___yxd 201 TTCCATTC-TGTTTGTGCTTTATTCCGTCAACGCCTTTCTCAAGTCGAGA 249
BSNT_06077 64 AATAAAGAATTCGGCATCCTGCTCATGCAGGGCATCACGCCGGGGCAGCT 113
|..||.||||||||.|||||...|||.|||||.|||.|.|||||.||..|
BL02957___yxd 250 AGCAAGGAATTCGGGATCCTCACCATCCAGGGAATCGCTCCGGGTCAATT 299
BSNT_06077 114 GAGAAAGCTCATTACTGCGGAAAATATGATCATCGGCGTTATGTCAATTG 163
|||.|||||.|||||.||.|||||.||.|||||||||||..|.||.||.|
BL02957___yxd 300 GAGGAAGCTGATTACCGCAGAAAACATCATCATCGGCGTGCTTTCGATCG 349
BSNT_06077 164 CAGCCGGCATTATCGGAGGGTTCATTTTTTCAAAGACGTTCTTTACGGTC 213
...|.|||||.|||||.||..|..|||||.||||.||.|||||||||.||
BL02957___yxd 350 TTACAGGCATCATCGGCGGTCTTGTTTTTGCAAAAACATTCTTTACGATC 399
BSNT_06077 214 GGCGCTTATATTTTAGAAATGGACGCGCTGCCCCTGTACATGCCTTGGAA 263
||||||||||||.|.|||||||||||..||||..||||..||||||||||
BL02957___yxd 400 GGCGCTTATATTCTGGAAATGGACGCTTTGCCATTGTATCTGCCTTGGAA 449
BSNT_06077 264 AGCGCTCGGCATTACGGCCGGCGGATTTC-TGCTCTTATTTTTCTTTTTA 312
||||.|.|.|.||||..|||.|.|.|||| |||.||..||.||| |..|.
BL02957___yxd 450 AGCGATGGCCCTTACATCCGCCTGCTTTCTTGCGCTGTTTATTC-TGCTG 498
BSNT_06077 313 TCGCAGTTTACGATTCTTTTTGTCAGATCAAATACGGTTATCAAATTAAT 362
|||||.||||||.|..|.|||.|.|.||||||.||.|||.||||..|.||
BL02957___yxd 499 TCGCAATTTACGGTGTTATTTATTAAATCAAAAACCGTTGTCAAGCTGAT 548
BSNT_06077 363 AAAGGGCACTGATAAGATTAAGCCGGAGCCTAAGCCGTCCGTGCTTCTGT 412
.||.|||||.|..||.|||||.||||||||.||.||||||.|..||.|.|
BL02957___yxd 549 CAAAGGCACCGGGAAAATTAAACCGGAGCCAAAACCGTCCATTATTTTTT 598
BSNT_06077 413 CCTTATTCGGCATCGCCTGTCTGTGCGGCGGGTAC-GGC----ATGGTT- 456
|..|..|||||||||.|||.||..||..|||.||| ||| ||.|||
BL02957___yxd 599 CGGTCGTCGGCATCGGCTGCCTCGGCTCCGGCTACTGGCTTGTATTGTTC 648
BSNT_06077 457 -CTTAAAGGCAATGTCCACGGGGCCGAACCGT-------TTATCATTTTA 498
|..|.|..||.|.||| ||.|.|||| ||| ||||
BL02957___yxd 649 GCCGACATCCATTTTCC------CCAAGCCGTCACGATCTTA--ATTT-- 688
BSNT_06077 499 CTGCTCACCGTCATCGGAACATATTTCTTTTTCAGCCAAAGCAGCATATG 548
|.||..|||||||.||.||||||||.|||||||||||||||||.||
BL02957___yxd 689 ----TGACGATCATCGGGACTTATTTCTTCTTCAGCCAAAGCAGCATTTG 734
BSNT_06077 549 GATTCTGCGCGCGCTG---AAGAAGTGGAAAACCTTTTATCTTCGCGGGA 595
|.|.||||| |||| ||.|||.|||...|.||||||.|.||.||.|
BL02957___yxd 735 GCTGCTGCG---GCTGTTAAAAAAGCGGAGGTCATTTTATTTACGAGGAA 781
BSNT_06077 596 AAAATATCATTTGGGTTTCTGACCTTGTCTATCGTCTAAAAGACAACGCC 645
||||..|..|||||.|.||.||.|||||.|||||.||.||.||.||.|||
BL02957___yxd 782 AAAACGTGCTTTGGATATCCGATCTTGTTTATCGGCTGAAGGATAATGCC 831
BSNT_06077 646 CGCCTGTTCTTTATTGTCAGCATTATTTCCGCGGTTGCGTTTACTGCGAC 695
||||||||||||.|.||..||||.|||||||||||.||.||||| ||.|
BL02957___yxd 832 CGCCTGTTCTTTCTCGTTTGCATCATTTCCGCGGTCGCCTTTAC--CGCC 879
BSNT_06077 696 AGGCGTGC--TCGCAATGTACAAATCGACCGTTGGGGCGGAA-----GAG 738
|.|.|||| |.|.|||.|.||| ||| ||....||||| ||.
BL02957___yxd 880 ATGGGTGCATTGGTAATTTCCAA---GAC--TTCTATCGGAAAATTGGAT 924
BSNT_06077 739 TCCGCTTATGAAATGGAGTATATATCTT-TTAGCAACA-----ATCCAAA 782
|||...|||||.||.||||| ||| ||| .||| |.|||||
BL02957___yxd 925 TCCCGATATGAGATAGAGTA-----CTTATTA--TACAGCGGGAGCCAAA 967
BSNT_06077 783 A-GAACAGACTCATTTGAAAGATATTGACCATGAACTGAAAACACACGG- 830
| |||||.||.||..|.||.|..||.||.||..||.|||| ..||||
BL02957___yxd 968 AGGAACAAACACACGTTAAGGTGATCGAACAAAAATTGAA---GGACGGA 1014
BSNT_06077 831 --CTTTACGTAT---AAGAAA--GACAAAATAGATGTTTCCTATGTTCGC 873
.|||.||||| |||.|| |||||||...|| .|||.|..||
BL02957___yxd 1015 CATTTTTCGTATGCAAAGGAAGTGACAAAAGGAAT-----TTATATGAGC 1059
BSNT_06077 874 TAT---CAGGAAGGAGAAACT-GTTCCCCCTGTTTACATGATCAGCAAAT 919
||| ||||.|| |.|| .||||.||.||...|.||.|| |
BL02957___yxd 1060 TATAGCCAGGGAG----ATCTCCTTCCTCCGGTGCTCCTGGTC------T 1099
BSNT_06077 920 CGGATG-----TATCAAAA-TACTTCCATGTTAA-----GCTGAGCGGCC 958
|.||.| |..||||| .|||| ||.||||| |.||| .|
BL02957___yxd 1100 CTGAAGGCGAATTCCAAAAGCACTT-CAAGTTAAATTCCGGTGA----AC 1144
BSNT_06077 959 TGAAAAATGATGAGGCTGTCTATT-TCCCGGGAACG--TATGACCGCAAT 1005
|||||.|.|.||||||..|.|||| ||| .|||| |.||| .||||
BL02957___yxd 1145 TGAAAGACGGTGAGGCGCTGTATTATCC---AAACGCCTTTGA-GGCAA- 1189
BSNT_06077 1006 TTCAAAAACGAAGCGCCGGA---TCAGCTGA--------AGCTGCTGAAC 1044
||.|| ||||| ||| || |||| |..||.|||||
BL02957___yxd 1190 ---AAGAA--AAGCG--GGAAATTC--CTGAGACCTTGGACATGTTGAAC 1230
BSNT_06077 1045 CAAAAAGGGGAGCTGTCTGATCAA-----AAACTGTCGGTAAAAGAAGTC 1089
.||.|...|.|||.|.|..||.|| ||| ||||||||...|.
BL02957___yxd 1231 AAAGATTTGAAGCCGGCAAATGAACGGCTAAA-----GGTAAAAGGTATT 1275
BSNT_06077 1090 AAAAAACCGCTGATCTCATT-GAATGCCATCATCGCGGTGAATGATCAAA 1138
|||||||||||.||.||.|| |||.| ||||.|.|..||.||.|...|||
BL02957___yxd 1276 AAAAAACCGCTCATTTCGTTAGAAAG-CATCGTTGTCGTAAACGGCAAAA 1324
BSNT_06077 1139 CCTTTGATCAGCTGAAATCACTCGGTGATAAAGCG--------TCATTAT 1180
||||.||..||||||||..|| ||.||| .||||.|
BL02957___yxd 1325 CCTTCGAAAAGCTGAAAAAAC--------AAGGCGAATCCCTCACATTGT 1366
BSNT_06077 1181 ACGGCTA-CAGCTATGATCATTGGAAAGACAGTCTTGAGATCAGCCAATC 1229
||||||| ||| ||..|.|..||||||||.||.||.||.||.||||||||
BL02957___yxd 1367 ACGGCTATCAG-TACAACCGCTGGAAAGAGAGCCTCGACATGAGCCAATC 1415
BSNT_06077 1230 CTTGCAAAATGAGATTTACGGCAATTATATCGAC---GTGCATTCTGATT 1276
.|||.|||| ||||.|..|..||..||.|| || .|.||.|.|.|.|
BL02957___yxd 1416 ATTGGAAAA--AGATCTCAGAGAAAAATCTC-ACAATATCCAATTTCAAT 1462
BSNT_06077 1277 TTGCTTCAAAAGCCGGGACTTACTATGATACGGTGCAGCTGCCGAGCTTG 1326
|||...||||.|||...|.|||.|.|||.||.||.|||||.||.|||.||
BL02957___yxd 1463 TTGAAGCAAAGGCCATCAATTATTTTGAAACTGTTCAGCTTCCAAGCCTG 1512
BSNT_06077 1327 AGTTTATTTATCGGCCTGTTTATCGCAATTGTATTCTTTGTCG-----CG 1371
|||.|.||||||||..|.|||||.||..||.|.|| |||..|| ||
BL02957___yxd 1513 AGTCTGTTTATCGGATTCTTTATTGCGGTTCTCTT-TTTTACGGCATCCG 1561
BSNT_06077 1372 GCAGCAAGTTTCTTATATTTCAGGCTGTTCACTGATTTAGATGAAGACCG 1421
|.||| |||| |.||.|||.|.|||||.||.|||.|.||.|||||.|.
BL02957___yxd 1562 GGAGC---TTTC-TGTACTTCCGCCTGTTTACCGATCTTGAAGAAGATCA 1607
BSNT_06077 1422 GGAGCGCTACCGTTCACTGGCCAAAATCGGCCTGAGTGAGCGTGAAATGG 1471
.|||||||||||.|||||..|.||||||||||||||.||....||||||.
BL02957___yxd 1608 AGAGCGCTACCGGTCACTCTCAAAAATCGGCCTGAGCGAAAAGGAAATGT 1657
BSNT_06077 1472 CACAAAGCGTGACAATACAATTGGCCATTCTTTTCTTCTTTCCATTTGTC 1521
|.||.|||||.||.||.|||||||||||.||.|||||||||||.||.||.
BL02957___yxd 1658 CGCAGAGCGTAACGATTCAATTGGCCATCCTGTTCTTCTTTCCGTTCGTA 1707
BSNT_06077 1522 ATTGCCGTC-ATGCATACACTGTTTGCCTTGAGAACATTGGCT-GTGGAA 1569
.|.||| || ||.|||||....|||||..|||..|| ||| |.||.|
BL02957___yxd 1708 CTCGCC-TCAATTCATACGTATTTTGCGATGAAGAC----GCTCGAGGCA 1752
BSNT_06077 1570 ---------GGCTATTCCG-ATGTCGCGGGGCCGCTCAGTCTCACCATCG 1609
||..|||.|| ||.|| ||| .|.||| |.||.||.|
BL02957___yxd 1753 CAGAGCCTTGGTCATTTCGCATCTC-CGG---TGATCA---TGACAATAG 1795
BSNT_06077 1610 GAGGGTTTTTCATTTTTCAGCTTCTATTCTTCCTCGCGGTGCGGTCAAGC 1659
|.||.|||.|.||.||.||.||..|||||||..|...|.|.||...||||
BL02957___yxd 1796 GCGGATTTCTGATCTTCCAACTATTATTCTTTATGATGATTCGAAAAAGC 1845
BSNT_06077 1660 TATTTGAAAAAAATGAACAAG------TAA----- 1683
|||.||||||||.| |.||| |||
BL02957___yxd 1846 TATCTGAAAAAATT--AAAAGGATTTTTAAGGTGA 1878
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