Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06085 and BL02955
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:05
# Commandline: needle
# -asequence dna-align/BSNT_06085___yxdK.1.5803.seq
# -bsequence dna-align/BL02955___yxdK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06085___yxdK-BL02955___yxdK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06085___yxdK-BL02955___yxdK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06085___yxdK
# 2: BL02955___yxdK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity: 723/1018 (71.0%)
# Similarity: 723/1018 (71.0%)
# Gaps: 77/1018 ( 7.6%)
# Score: 2476.5
#
#
#=======================================
BSNT_06085___ 1 ATGAAGCTGTTTCT------CCGGTCTCATGCAGTGCTGATTCTGCTTTT 44
|||||||||||.|| | |||||.||.||.|||.|.||.||
BL02955___yxd 1 ATGAAGCTGTTCCTAAAAAAC------CATGCCGTTCTCATTTTTCTGTT 44
BSNT_06085___ 45 TCTCCTTCAAGGACTG-TTTGTCTTCTTTTATTACTGGTTTGCGGGTCTT 93
||||.||| |||.|.| ||.||.||.|||||.||.||||||||.||..|.
BL02955___yxd 45 TCTCTTTC-AGGGCGGATTCGTATTTTTTTACTATTGGTTTGCCGGCATG 93
BSNT_06085___ 94 CATTCTTTTTCTCACCTGTTTTACATATTGGGCGTGCAGCTTCTTATTTT 143
||..||||..|.|||||.||||||||..|.|||||.||||||| |
BL02955___yxd 94 CAGACTTTCACCCACCTTTTTTACATTCTCGGCGTTCAGCTTC------T 137
BSNT_06085___ 144 GGC----GGGC--TATCTTGCCTATCGCTGGTACAAAGACCGCGGCGTGT 187
||| |.|| ||||||.|.||....|||||..||||.|.|.|.||.|
BL02955___yxd 138 GGCGCTTGCGCTTTATCTTTCATACAAATGGTATGAAGAACACAGAGTCT 187
BSNT_06085___ 188 ATCATTGGCTCAGCTCGGGGCAGGAAGGGACGGATATCCCGTATCTCGGT 237
|.||.|||.||.||||.|..||..|||..||.||.||.||.|.|.|.||.
BL02955___yxd 188 ACCAATGGATCGGCTCAGATCAAAAAGATACAGAAATTCCTTTTTTGGGG 237
BSNT_06085___ 238 TCTTCAGTGTTCTGTTCAAAGCTGTATGAAAAGCAGATGGAGCTGATCCG 287
.|.||.|..||.||.|||.||||.||||||||.||.||||||||||.|||
BL02955___yxd 238 ACGTCTGAATTTTGCTCAGAGCTCTATGAAAAACATATGGAGCTGAGCCG 287
BSNT_06085___ 288 GATGCAGCACCAGAAGCTCCATGAGACCGAAGCCAAGCTTGACGCGCGGG 337
|.|.||.||||..||..|.|||||.|..||..|||||||.||.|...|||
BL02955___yxd 288 GCTCCACCACCGCAAAATACATGATATGGAGTCCAAGCTGGAAGATAGGG 337
BSNT_06085___ 338 TGACGTATATGAATCAATGGGTGCACCAAGTAAAGACGCCGCTGTCGGTC 387
|.||.||.|||||||||||||||||.||.||.||.||.|||||.||.|||
BL02955___yxd 338 TAACCTACATGAATCAATGGGTGCATCAGGTGAAAACACCGCTTTCCGTC 387
BSNT_06085___ 388 ATTAATTTAATCATTCAAGAAGAGGATGAGCCCGTTTTTGAACAAATCAA 437
||.|||.|.|||||.||.||||||||.||.|||||||||.||||||||||
BL02955___yxd 388 ATCAATCTGATCATCCAGGAAGAGGACGAACCCGTTTTTAAACAAATCAA 437
BSNT_06085___ 438 AAAAGAAGTCCGGCAGATTGAATTCGGGCTGGAGACGCTTCTTTATTCTT 487
|||||||||||.|||||||||||.|||.|||||||||||.||.|||||.|
BL02955___yxd 438 AAAAGAAGTCCAGCAGATTGAATACGGACTGGAGACGCTCCTCTATTCAT 487
BSNT_06085___ 488 CAAGGCTTGACCTGTTTGAACGGGATTTTAAAATCGAAGCGGTTTCCCTA 537
||||||||||||||||||||.|.|||||||||||.||.||.||.||.|||
BL02955___yxd 488 CAAGGCTTGACCTGTTTGAAAGAGATTTTAAAATTGAGGCCGTGTCACTA 537
BSNT_06085___ 538 TCCGAGCTTCTCCAATCAGTCATTCAAAGCTATAAACGATTTTTTATTCA 587
..||||||.||..|.||..|.|||||..||||||||||.|.||||||.||
BL02955___yxd 538 GACGAGCTGCTTAATTCGCTGATTCAGCGCTATAAACGCTATTTTATACA 587
BSNT_06085___ 588 ATATCGCGTTTATCCGAAAATGAAC--GTTTGCGATGATCATCAG----- 630
..||||.||.||||| ||||.||| |||..||.||| ||
BL02955___yxd 588 GCATCGTGTCTATCC--AAATAAACAGGTTCCCGCTGA-----AGACGCC 630
BSNT_06085___ 631 ---ATTTACACCGATGCCAAATGGCTCAAATTTGCGATCGGCCAAGTGGT 677
||||||.|||||..|||||||||||.||||.|.|..||||||||..|
BL02955___yxd 631 GTTATTTACTCCGATCGCAAATGGCTCAGATTTTCCACTGGCCAAGTCAT 680
BSNT_06085___ 678 CACAAATGCGGTCAAGTATTCAGCGGGCAAG-AGTGA---CA--GACTTG 721
|||.||.||.||.|||||.||..|.|| ||| ||.|| || ||.|||
BL02955___yxd 681 CACTAACGCTGTGAAGTACTCGTCAGG-AAGAAGCGAACGCATCGATTTG 729
BSNT_06085___ 722 AGCTGAATGTCTTCCGCGATGAAGACAGGACG----GTGCTTGAAGTCAA 767
| .|| |.||||| |.|||.| |.||| .|.||.|||.||||
BL02955___yxd 730 A--CGA---TATTCCG---TAAAGGC-GAACGCATCATTCTGGAAATCAA 770
BSNT_06085___ 768 AGATTACGGTGTCGGGATTCCCTCGCAAGACATCAAGCGGGTGTTTGACC 817
|||||||||..||||.||.||.||.|||||..|.||.||.||.|||||.|
BL02955___yxd 771 AGATTACGGAATCGGAATCCCTTCACAAGATGTGAAACGCGTATTTGAGC 820
BSNT_06085___ 818 CTTATTACACCGGTGAAAACGGGCAGCGTTTCCAAGAATCTACGGGAATC 867
|||||||||||||.||||||||.|.|||.||.||.|||||.||.||.|||
BL02955___yxd 821 CTTATTACACCGGGGAAAACGGACGGCGCTTTCAGGAATCAACAGGCATC 870
BSNT_06085___ 868 GGCCTCCATCTCGTCAAAGAAATTACAGATAAGCTCAATCATACGGTAGA 917
||||||.|.||.||.|||||.|||.|.||.|||||||||||| ||
BL02955___yxd 871 GGCCTCTACCTTGTAAAAGAGATTGCCGAAAAGCTCAATCAT------GA 914
BSNT_06085___ 918 CATCAGC-TCGTCTCCCGGTGAAGG------GACATCAGTTCGATTTTCA 960
..|.||| ||| .|.|.|..||||| .||..|.||.|.|||||||
BL02955___yxd 915 TGTGAGCATCG-ATTCAGAAGAAGGAAAAGAAACGACTGTGCAATTTTCA 963
BSNT_06085___ 961 TTTCTTACAAAAATGTAA 978
||||||||||||||||||
BL02955___yxd 964 TTTCTTACAAAAATGTAA 981
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