Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02979 and BL02941
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_02979___yneN.1.5803.seq
# -bsequence dna-align/BL02941___yneN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02979___yneN-BL02941___yneN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02979___yneN-BL02941___yneN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02979___yneN
# 2: BL02941___yneN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 562
# Identity: 360/562 (64.1%)
# Similarity: 360/562 (64.1%)
# Gaps: 107/562 (19.0%)
# Score: 1046.0
#
#
#=======================================
BSNT_02979___ 1 ATGCTGAAAAAA----TGGCTCGCAGGGATCCTGCTTA-TCATGCTTGCT 45
.|||||||| ||||| ||.|.|.|.|| .||| ||.|| ||.
BL02941___yne 1 ---ATGAAAAAAGTGCTGGCT-GCCGCGTTTCT-TTTAGTCTTG---GCC 42
BSNT_02979___ 46 GGTTATACGGGATGGAATTTATATCAAACATACA--GCAAAA--AA---G 88
|||..|.|||..|||||||| |||| |||||| || |
BL02941___yne 43 GGTCTTGCGGTTTGGAATTT----------TACAGGGCAAAAGGAAGCCG 82
BSNT_02979___ 89 AAGTCGGAATTCAAGAGGGGAAACAA-GCACCTGATTTTTCTTTGAAAAC 137
||.||||.||| .|||..|||.|||| ||.||||||||| ||
BL02941___yne 83 AAATCGGCATT-GAGAAAGGAGACAAGGCGCCTGATTTT---------AC 122
BSNT_02979___ 138 GCT---GTCAGGAGAGAA---AAGC------TCTTT-ACAGGATGCA--- 171
||| ||||..|.|||| ||.| ||||| .||| |
BL02941___yne 123 GCTGCCGTCATTAAAGAATGGAAACGATGTATCTTTGTCAG-----ACTT 167
BSNT_02979___ 172 -AAAGGCAAAAAAGTGCTGCTCAATTTTTGGGCAACTTGGTGTAAGCCGT 220
|||||.||||||||||||.|.|||||||||||.||.|||||||..||||
BL02941___yne 168 TAAAGGGAAAAAAGTGCTGTTAAATTTTTGGGCCACCTGGTGTAGACCGT 217
BSNT_02979___ 221 G-----CCGTCAGGAAATGCCTGCGATGGAAAAGCTGCAAAAAGAGTACG 265
| || |||||||||||.||||||.||||.|||||.||..|..
BL02941___yne 218 GTGAAACC-----GAAATGCCTGCAATGGAAGAGCTTCAAAATGAAAATC 262
BSNT_02979___ 266 CCGACAAACTTGCGGTTGTTGCGGTAAATTTCACTTCAGCTGAGAAAAGT 315
..|||| ||||.|||.|.||.||.||.||.||.||..|.|||||||..
BL02941___yne 263 AGGACA---TTGCCGTTTTAGCCGTCAACTTTACATCTTCCGAGAAAAAC 309
BSNT_02979___ 316 GAGAAACA-GGTCCGTGCGTTTGCTGATACGTATGATTTAACGTTCCCCA 364
|| |||.| ||||...||||||||.||.|.|.|.|.||||...|||||||
BL02941___yne 310 GA-AAAGACGGTCAAAGCGTTTGCCGAAAGGCACGGTTTACATTTCCCCA 358
BSNT_02979___ 365 T--TCTGATTGATAAA---AAAGGG-ATCAATGCTGACTATAACGTGA-- 406
| ||| ||.| ||.||| ||||||||..|.| |||.||
BL02941___yne 359 TCGTCT------TAGACCGAACGGGCATCAATGCGAAAT---ACGAGATT 399
BSNT_02979___ 407 -TGTCATATCCAACGACATATATCTTAGATGAAAAAGGTGTTATCCAAGA 455
|.||||||||.|||||||.||||.|.||||||||.||..|.||..||||
BL02941___yne 400 TTTTCATATCCGACGACATTTATCATTGATGAAAACGGAATCATTAAAGA 449
BSNT_02979___ 456 CATACATG-TTGGCACCATGACAAAAAAAGAA-ATGGAACAAAAACTGGA 503
.|| |.|| |.||.||.|||.| .|||||||| ||||||.||||.||||
BL02941___yne 450 TAT-CGTGCTGGGGACGATGTC-GAAAAAGAATATGGAAGAAAAGCTGG- 496
BSNT_02979___ 504 TCTTGATTAG-- 513
|||||.
BL02941___yne 497 ----GATTATAA 504
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