Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03352 and BL02930

See Amino acid alignment / Visit BSNT_03352 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_03352___ypjB.1.5803.seq
#    -bsequence dna-align/BL02930.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03352___ypjB-BL02930.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03352___ypjB-BL02930.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03352___ypjB
# 2: BL02930
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 858
# Identity:     540/858 (62.9%)
# Similarity:   540/858 (62.9%)
# Gaps:         120/858 (14.0%)
# Score: 1477.5
# 
#
#=======================================

BSNT_03352___      1 ATGAAACGAAAGCTGACGATCTGTTTGTTGATTGCACTTATTTTTTATAA     50
                     ||||.|||||||.|||...|.||..||.||.||||.|||.|||||     
BL02930            1 ATGATACGAAAGGTGATCCTTTGCATGATGCTTGCGCTTGTTTTT-----     45

BSNT_03352___     51 TGGAAATGCCAAGGC-----TGCAGAGCG-GGGAAGCCTCG-------AG     87
                         ..|||   |||     || |.|||| ..|||.|.|||       ||
BL02930           46 ----CCTGC---GGCCGGTTTG-AAAGCGAAAGAATCATCGGCTTTGCAG     87

BSNT_03352___     88 GAATTGAATGATTTATCCGATACAGTCTTTCAAATGACCCGACAGGCAAA    137
                     |||||||..||..|.||.|||||.||.||.||..|.||..|.|||.|..|
BL02930           88 GAATTGACGGAACTGTCGGATACGGTATTCCAGCTAACAAGGCAGTCTCA    137

BSNT_03352___    138 ATATGAAGAGGCGCTTC-AAGTCTTGGAGTATTTTGAAAAAACATTAAAA    186
                     ||||||.||.|||.|.| ||.|||| .|.||.||||||||||...|.|||
BL02930          138 ATATGAGGAAGCGGTACAAATTCTT-CAATACTTTGAAAAAAGGCTGAAA    186

BSNT_03352___    187 TCCGCTGAGAAAAA----ACAGCAAGACCCCATGCTAACGGGATCCCAAA    232
                     .|.||.||||||.|    |||| |.||   .|||.|.||.||.||..|||
BL02930          187 GCTGCGGAGAAAGACGGGACAG-AGGA---TATGATGACAGGCTCGGAAA    232

BSNT_03352___    233 TCCGTCAAATCACATTGGGCTATAATGATATGGTTCGGAGTTT--AAAGC    280
                     ||||.||..|||...|||.||||.||||||.|.|....|||.|  |||||
BL02930          233 TCCGCCAGGTCAGTCTGGCCTATCATGATACGCTGAAAAGTCTGGAAAGC    282

BSNT_03352___    281 AAGCTGATACATCAGA-----CACAC----AAAAACTCAGAGCAGCCGCG    321
                     .|           |||     |||||    |.|||.|.|.|||.|||||.
BL02930          283 GA-----------AGAGGTCGCACACCAGGAGAAATTTAAAGCCGCCGCC    321

BSNT_03352___    322 CAGTTCAGGATGCTGATGGATGCGGTTGAAAATC-GGTC-TGACCCGCTT    369
                     |||||.||.|||||||||||.||..|||  |||| |.|| |||.|||||.
BL02930          322 CAGTTTAGAATGCTGATGGACGCCATTG--AATCAGATCATGATCCGCTG    369

BSNT_03352___    370 TGGGGCTCACTGGAAAAACCGATTATGGAAGCTTTTA-----CTGAACTG    414
                     |||.||....||.||||.|||||.|||||..||||.|     .|||    
BL02930          370 TGGAGCAGTTTGAAAAAGCCGATCATGGATTCTTTCAGCGCTTTGA----    415

BSNT_03352___    415 AAG-CGAGATGTCCAAAAGAATGGAAGCACAAGCT-----TTCA-TGAAA    457
                     ||| ||.||| ||..||||||      .|||| ||     |||| .||||
BL02930          416 AAGCCGGGAT-TCAGAAAGAA------GACAA-CTTGACATTCAGGGAAA    457

BSNT_03352___    458 AATGGAATGA--ATTTATCAGTTTATATGACTTGATTTACCCCAGTCTT-    504
                     |.||||||.|  .||||||  .||.|||||...||||||.||.|| ||| 
BL02930          458 AGTGGAATCATTTTTTATC--CTTGTATGATACGATTTATCCAAG-CTTA    504

BSNT_03352___    505 ACAATCGATGTAT---CAGAGGATCAGCTTGAAACAGTCGGAAAACATAT    551
                     ||.||||||||.|   ||.||   |||.|..|||..|||...||.|||||
BL02930          505 ACGATCGATGTTTCGCCAAAG---CAGTTAAAAAGCGTCTCCAACCATAT    551

BSNT_03352___    552 ---AGACGTTATTGAGCAA----GAGGAATTTCAGCAAATGACAGAGAGC    594
                        ||.|||      |.||    |||| .||.|||||||||||.||.|||
BL02930          552 TGCAGTCGT------GGAAAACGGAGG-CTTCCAGCAAATGACGGAAAGC    594

BSNT_03352___    595 ACGAAGCTTGAACGGCTTTCCCTTCTTCAGCATGACCTGAAAAATGTGTT    644
                     |..|||||.|||.||||..|.|||.|..|..|.||..||.||.|||||||
BL02930          595 AGCAAGCTGGAAAGGCTGACGCTTTTGGAAAAAGATTTGGAAGATGTGTT    644

BSNT_03352___    645 TGA-CAGGGTGGAGGAGGATGATGCCGATCCGTCTTTACTCTGGGTGATG    693
                     ||| || .||.||.||.||||||||.||.||.||..|.||.|||||.||.
BL02930          645 TGATCA-AGTAGAAGAAGATGATGCAGACCCTTCCCTGCTATGGGTCATC    693

BSNT_03352___    694 ATTACAACCGGCAGTATCATCATTACTGCTCTTACCTATGTCGGTTACAG    743
                     .|.||.||.||.||.||.|||.|..|..|.||.||.||.|||||||.|||
BL02930          694 CTGACGACGGGAAGCATTATCCTCTCGACGCTGACATACGTCGGTTTCAG    743

BSNT_03352___    744 AAAGTACAAGGCGGAAAAAAACAAGCTGAAAAAAAG------GGACTACC    787
                     ||||||.||.||.|||.|..|||.||..|.||||||      .||.|..|
BL02930          744 AAAGTATAAAGCCGAAGAGGACAGGCGCAGAAAAAGAGAAAAAGATTGGC    793

BSNT_03352___    788 CTAAATAA    795
                     |.||||||
BL02930          794 CGAAATAA    801


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