Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03353 and BL02929
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_03353___ypjA.1.5803.seq
# -bsequence dna-align/BL02929.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03353___ypjA-BL02929.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03353___ypjA-BL02929.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03353___ypjA
# 2: BL02929
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 611
# Identity: 402/611 (65.8%)
# Similarity: 402/611 (65.8%)
# Gaps: 79/611 (12.9%)
# Score: 1335.5
#
#
#=======================================
BSNT_03353___ 1 GTGAAATGGTTTCAATATGTATTAGGGCAGCGGCCGATGCTTATTCTTGT 50
||||||.|.||..|
BL02929 1 ------------------------------------ATGCTTCTGCTGCT 14
BSNT_03353___ 51 CTTAGCCATTAATTTTCTGGGAACGGTTTACGGCTACTATTGGTACTTGC 100
.||...|||||||||..|.||.|||||||||||.||.|||||||||.|.|
BL02929 15 TTTGATCATTAATTTCTTCGGTACGGTTTACGGGTATTATTGGTACCTTC 64
BSNT_03353___ 101 CGCAGCTTTTGGAGACACCGGC-CCGTTTCCTGATTTTTGTTCCGGACAG 149
|||||||...|.|.||.||.|| ..|||| |||||.||.|||||.|||||
BL02929 65 CGCAGCTGACGAATACGCCAGCGAAGTTT-CTGATCTTCGTTCCCGACAG 113
BSNT_03353___ 150 TCCGACAGCAACGTTTTTCTTTCTGTTTGTGCTGCTTG--CCTTTCTCAT 197
.|||||.||.||.||.||||||.|.||.||.||..|.| |.|||.| |
BL02929 114 CCCGACGGCGACCTTGTTCTTTTTATTCGTTCTCATCGGACTTTTAT--T 161
BSNT_03353___ 198 GAAACGGAATGCTCCGCTCTTTGAGGCGCTTGCGCTAGTAACCCTCGTAA 247
|..|.|||||||||||||.|||||||||||||||||.||.||.||.||.|
BL02929 162 GGGAAGGAATGCTCCGCTTTTTGAGGCGCTTGCGCTTGTTACGCTTGTCA 211
BSNT_03353___ 248 AGTATGGCCTATGGGCGGTGGCTATGAATTTTCTTGTGCTTGCAGTAACT 297
|.||.||.||.||||||||.|..||||||.||||.||||||| |
BL02929 212 AATACGGGCTGTGGGCGGTTGTAATGAATGTTCTCGTGCTTG-------T 254
BSNT_03353___ 298 GGTGA--------CTTGCCGTGGGA-GGGCTACATGCTAATTGCTTCGCA 338
||||| ||| |.|.||| |||.||.|||||.||.||.|||||
BL02929 255 GGTGACCGGAAGCCTT--CATTGGACGGGGTATATGCTGATCGCGTCGCA 302
BSNT_03353___ 339 TTTTGCAATGGCTGTTCAAGGCGTATTATACAGTCCGTATTTTCGTTTTT 388
.||.|||||||||||.||||||||..|.|||...|||.||||.||.||..
BL02929 303 CTTCGCAATGGCTGTGCAAGGCGTGCTGTACGCCCCGCATTTCCGGTTCA 352
BSNT_03353___ 389 CATTTTGGCATCTTGCAATTGCTGCAGTCTGGACACTGCATAACGATGTC 438
.|...||||||.|.||..||||.||.||.|||||..||||||||||||.|
BL02929 353 AAGGGTGGCATTTGGCGCTTGCGGCTGTTTGGACGATGCATAACGATGCC 402
BSNT_03353___ 439 ATTGACTACTTGTTTGATATGATGCCGCGGTATTCAATGCTTTCTGATTA 488
|||||.||||||||||..|||||||||...|||||.|||||...|.|.||
BL02929 403 ATTGATTACTTGTTTGGAATGATGCCGAATTATTCTATGCTCGATCAATA 452
BSNT_03353___ 489 TATGACTGAAATAGGATACGGAACATTTTGGCTAAGCATCTTCTCAATCG 538
||||.|..|.||.||.||....|||||||||||.||||||...||.||||
BL02929 453 TATGCCGCAGATCGGCTATTTTACATTTTGGCTCAGCATCGCTTCGATCG 502
BSNT_03353___ 539 CGCTT-GCTTACTTTCTTG--TGGTCTCAAAAAAGCAAACGAAGC--TTG 583
|.|| ||.||||..|||| |.|||.|.|| |||| ||.
BL02929 503 -GTTTGGCCTACTACCTTGTCTTGTCCCGAA----------AAGCTTTTA 541
BSNT_03353___ 584 AGCTGATGTAA 594
||| |||||
BL02929 542 AGC---TGTAA 549
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