Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00964 and BL02919
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_00964___ydgC.1.5803.seq
# -bsequence dna-align/BL02919.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00964___ydgC-BL02919.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00964___ydgC-BL02919.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00964___ydgC
# 2: BL02919
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity: 426/638 (66.8%)
# Similarity: 426/638 (66.8%)
# Gaps: 70/638 (11.0%)
# Score: 1402.5
#
#
#=======================================
BSNT_00964___ 1 -------TTGAAAAGTAAAAAAGGACGTAAAGGAGAAGAAAGCCGGAAAC 43
|||||||| ||.||.|||||..||.||||||||||.|
BL02919 1 GTGGGAATTGAAAAG-------GGCCGCAAAGGCAAACAAAGCCGGAAGC 43
BSNT_00964___ 44 GGTTACTCAAAGCTGCCGCTAATGAATTTTCGATTCGGGGATTCCATGAC 93
||.|.|||.|.|..||.||.||.||||||.|.|..||||||||||||||.
BL02919 44 GGCTGCTCGAGGTCGCTGCAAACGAATTTGCAAACCGGGGATTCCATGAG 93
BSNT_00964___ 94 GCGAAGGTAAGTGAAATTGTGAAAAAAGCTGGGTTCACGCAGCCTTCATT 143
.|.||.||.|||...||||||||||.||||||..|.||.||||||||.||
BL02919 94 ACAAAAGTGAGTACGATTGTGAAAAGAGCTGGACTGACTCAGCCTTCTTT 143
BSNT_00964___ 144 TTACCTGTACTTTCAAAGCAAAGAAGCCATCTTTGCCGAGTTAATAACCG 193
.|||||.||.||.|.||||||.||.|||||||.||.||||.|.||.|..|
BL02919 144 CTACCTATATTTCCCAAGCAAGGACGCCATCTATGACGAGCTGATCAATG 193
BSNT_00964___ 194 ATTTTCACTCTCGGG----TCAGAAAGCTGACAGAGTCACTTCTTCTGGA 239
..||||| ||.| |.|.|||.||||..||.||..|.|.|.|.||
BL02919 194 GCTTTCA----CGCGAACTTAAAAAATCTGATCGAATCGTTCCGTTTAGA 239
BSNT_00964___ 240 AAACGGATT-------AAACACGGAGGATGTGTCAAAACGGGT-ACTGCT 281
.||.|||.| |||||| ||.||||||||||| ||.||
BL02919 240 GAAAGGAATCGAGAAAAAACAC-------GTATCAAAACGGGTAACGGC- 281
BSNT_00964___ 282 AGCTGTAGAGACTGTTTTTCAATTTTTAGCTGAGGACAAGGATTTAACCA 331
.|||||||||.||||.||||.||||||.||.||||||...|||||.||..
BL02919 282 CGCTGTAGAGGCTGTATTTCGATTTTTGGCAGAGGACCCCGATTTGACTC 331
BSNT_00964___ 332 AGATCGGCTTTTTTCTCAACCCGGAAGCAAAACAAATGAAAAAAGACTTG 381
..|||||.||||||||||.|||.||||||....|||||||||||||.||.
BL02919 332 GCATCGGTTTTTTTCTCAGCCCTGAAGCAGGCGAAATGAAAAAAGATTTA 381
BSNT_00964___ 382 GCGATGGTTTTGAAAGAGAACTTAAAAGCAGAACAGCGGCTTGGCTATTT 431
.||.|.|..||||||||.|||||.||||||||.|||..|||.|||||.||
BL02919 382 ACGCTCGCCTTGAAAGAAAACTTGAAAGCAGAGCAGGAGCTCGGCTACTT 431
BSNT_00964___ 432 TCACTCTGAGCTGGATATGGAAACTGTCGCTGAGTGTTTGATCGGCATGA 481
.|..||.||.|||||.|||||.||.||.|||||.|||.|||..|||||||
BL02919 432 CCGATCCGACCTGGAAATGGAGACCGTTGCTGAATGTCTGACAGGCATGA 481
BSNT_00964___ 482 TTGAACATTTAACCGAT-TCATTTTTG-TTAACCGGAATCAAA-GATCCG 528
||||.||..|..||||| || |.|||| ||.|| |.|||||| ||.||.
BL02919 482 TTGAGCACCTTGCCGATATC-TATTTGCTTGAC--GGATCAAAGGACCCC 528
BSNT_00964___ 529 GCAAGCCTCGCAGCAGAGGTTGTGAATCTTTTAATATACGGGATGCT--- 575
.||||.||||||..|.|..|...|.|||||||.||..||||.|||||
BL02919 529 TCAAGTCTCGCAAAACAAATCACGGATCTTTTGATCCACGGAATGCTCGT 578
BSNT_00964___ 576 ------------TCC-GAAAGGGAATGACGTAAGATGA 600
||| ||||.|||.|||
BL02919 579 AAATCCGCAGCATCCAGAAACGGAGTGA---------- 606
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