Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03520 and BL02911

See Amino acid alignment / Visit BSNT_03520 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_03520___yqkB.1.5803.seq
#    -bsequence dna-align/BL02911___yqkB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03520___yqkB-BL02911___yqkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03520___yqkB-BL02911___yqkB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03520___yqkB
# 2: BL02911___yqkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity:     223/354 (63.0%)
# Similarity:   223/354 (63.0%)
# Gaps:          60/354 (16.9%)
# Score: 734.5
# 
#
#=======================================

BSNT_03520___      1 ATGAACATACATGTGACAGATGCAGC---AAAACAGGCACTGCAGCAGGC     47
                                        |||||||   |||    .|||||| .|||||
BL02911___yqk      1 -------------------ATGCAGCTTGAAA----TCACTGC-TCAGGC     26

BSNT_03520___     48 GTTTGACGCCAACC-------CGGGAAAAAAAGC----------------     74
                          |.|.|||.|       ||||.||.|.|||                
BL02911___yqk     27 -----AAGACAAGCCATTCAACGGGCAACAGAGCCTTATCCTGATAAAAA     71

BSNT_03520___     75 ---CCAGCTTCGTTACGATGCAGAAGGATGCGGCTGCGCGGTAAGCGGTG    121
                        ||||||.||.||.|||.|.||.||||||||.||||||||.|||||||
BL02911___yqk     72 GATCCAGCTCCGCTATGATTCCGAGGGATGCGGATGCGCGGTCAGCGGTG    121

BSNT_03520___    122 TCCCGACAATCTGGCTGGCAGAAGAATTAACGGGACAG-TGCGAGCAGCT    170
                     |.|||....|.||||||.|.||.||||||.||||| || |||||||..||
BL02911___yqk    122 TGCCGGTCTTGTGGCTGACGGACGAATTATCGGGA-AGTTGCGAGCCCCT    170

BSNT_03520___    171 GGAAACGAACGGCATTCCGCTGTATATCCAATCGTCGCAAAAAGTGTTTT    220
                     .||.||.|||||..|||||.|.|||||.||.||.|||||||||||.||||
BL02911___yqk    171 TGAGACAAACGGGCTTCCGATTTATATTCAGTCATCGCAAAAAGTCTTTT    220

BSNT_03520___    221 TTGACGATCAAATGACGATCGATTACAATGAAAAAGCCAAAACATTGGCG    270
                     ||||.||....|||||.|||||.||..||||.|||||.....|.|||..|
BL02911___yqk    221 TTGATGAAGCGATGACCATCGACTATTATGAGAAAGCGGGTGCGTTGATG    270

BSNT_03520___    271 CTGAAAAGCCCGGCTGAAATGCTCAGCCCCAGAATGAGCATATTAGTAAA    320
                     |||||.||.|||||..|..||||....|||||||||||.||.|||||.||
BL02911___yqk    271 CTGAAGAGTCCGGCACAGGTGCTTTCTCCCAGAATGAGTATTTTAGTGAA    320

BSNT_03520___    321 GTAG    324
                     .|||
BL02911___yqk    321 ATAG    324


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