Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03522 and BL02910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_03522___yqkA.1.5803.seq
# -bsequence dna-align/BL02910___yqkA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03522___yqkA-BL02910___yqkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03522___yqkA-BL02910___yqkA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03522___yqkA
# 2: BL02910___yqkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1195
# Identity: 621/1195 (52.0%)
# Similarity: 621/1195 (52.0%)
# Gaps: 386/1195 (32.3%)
# Score: 1376.5
#
#
#=======================================
BSNT_03522___ 1 ATGATTGAATTTCTCCAGCATAAGGAAGA----CACTATAGCGCGTGAG- 45
||||||.||||..|..|.||.| |||| || ||.|||.|| .||
BL02910___yqk 1 ATGATTCAATTGTTAAACCAAA---AAGATCCGCA-TACAGCCCG-CAGC 45
BSNT_03522___ 46 ATTTTAGCCGTACAGATCCCCGCCTACAT-AAAG-GAAACAGAGATTATC 93
|||.||...||.||.|..||.||.| || |||| |||.|.|||||.||.
BL02910___yqk 46 ATTGTAAATGTTCAAAGGCCGGCTT--ATGAAAGAGAAGCGGAGATCATT 93
BSNT_03522___ 94 GGTTTTGACGGTATTC--CCGCTTTACAAGAGAAGGTGAA--------GG 133
...|||.|.||.|||| |.||| ||| |||| .|
BL02910___yqk 94 CAATTTCAGGGCATTCCGCAGCT--------GAA--TGAAACGGTTTTTG 133
BSNT_03522___ 134 AT-------ATTCA--AGCA--TCCCATGAGC-GGTTTGCGGGATATCGG 171
|| ||||| ||.| |..|||..|| .|||||.||| ||
BL02910___yqk 134 ATGTAATGGATTCACGAGAAACTTTCATCGGCTCGTTTGAGGG-----GG 178
BSNT_03522___ 172 AAAAA-----CGGCAAGCTGATCGGTGTCATTTCATATGAGAAAAACATG 216
||.|| ||| .||||.|..| ||||| ||||.
BL02910___yqk 179 AAGAATTAGCCGG------AATCGCTTCC--TTCAT---------ACATA 211
BSNT_03522___ 217 CATC-----ATCTCACCATTTGCAGGCTTGTTGTGCATCCTGACGGTTTC 261
||.| |.||.||.||.||||||||.|..||.|||||.|.|..|||.
BL02910___yqk 212 CAGCTGAAAAGCTGACGATCTGCAGGCTGGCCGTTCATCCGGTCCATTTT 261
BSNT_03522___ 262 AGAAAAGGAATTGGACGAGCGCTTCTGCAATTTGTCATTGATCAT-AATG 310
.||||.||.||||.|...||.||.||.|..|.|.| ||||||..| ||.|
BL02910___yqk 262 CGAAAGGGGATTGCAATGGCCCTGCTTCGTTATAT-ATTGATGGTGAAGG 310
BSNT_03522___ 311 AAGACGCTGAGAAAATC----GAAGT-------AGTCACAGCCGAGAA-- 347
|||.|| |||| ||||| .|| ||.|.|||
BL02910___yqk 311 AAGCCG-------AATCGTTTGAAGTGACGACGGGT----GCGGGGAATG 349
BSNT_03522___ 348 ------CAATACCCCGGCTGTGTC----ACTCTATACACAGGCCGGATTC 387
|||.|.| |||||.|| |.| || ||.||.
BL02910___yqk 350 AGCCGGCAAAAGC---GCTGTATCGGAAATT---------GG--GGTTTT 385
BSNT_03522___ 388 C--------AAAAGGCAGAAACCGTCAAAGCAGCGCAGGGTCTATTGCTG 429
| ||.||...|||.|.|..|||| |||| ||
BL02910___yqk 386 CTGAAATTGAACAGTATGAACCTGAAAAAG-------GGGT-------TG 421
BSNT_03522___ 430 TCGGTCTTTCA----TT----TGTA---TCCGAAAAGAAAAGTTGAGATC 468
| ||||||| || ||.| .||| |||||.|||.|..||
BL02910___yqk 422 T---TCTTTCAAGGCTTACGCTGCAAGCACCG---AGAAAGGTTAAAGTC 465
BSNT_03522___ 469 ATTCT-CTACAACGAAAAAT----GGGCAGAATGTTTCGATGAAGAAAAA 513
.||| |||.||.|||.||| |||| ||||.||||.|.||| |||||
BL02910___yqk 466 -GTCTCCTATAAAGAAGAATGGAAGGGC-GAATTTTTCAAGGAA-AAAAA 512
BSNT_03522___ 514 GAACGGCTGAAA---CTTGTGTTCGGGCCGGAGAT----TATCGC-TGTT 555
| |.|||..|| |||.| ||||| || |.|.|| |.||
BL02910___yqk 513 G--CAGCTTGAAGCGCTTTT-------CCGGA-ATGAAGTCTTGCATATT 552
BSNT_03522___ 556 CATCACATCGGAAGCACATCAATACCGAACATGGCAGCG--AAGCCAATC 603
||.||||||||||||||.|||||.|||...||| |||| |||||.|||
BL02910___yqk 553 CACCACATCGGAAGCACGTCAATTCCGGGAATG--AGCGCCAAGCCTATC 600
BSNT_03522___ 604 ATTGATATGTTAATTGAAGTCAGAA--------------------GCATT 633
|||||.||..|.||.||||| ||| ||.|.
BL02910___yqk 601 ATTGACATACTGATCGAAGT--GAAAGATCTCGGCTCCGCCGCCGGCTTC 648
BSNT_03522___ 634 GAAGCCGTGAGCCAATTTGATGAACAAATGAAGGCCAACGGCTATACACC 683
||| ||...||||| ||||| ..|||||||..|||
BL02910___yqk 649 GAA----------AAGGGGATGA--AAATG------CTCGGCTATGAACC 680
BSNT_03522___ 684 AAAAGGTGAGAACGGTATAGCGGGCAGGCG-TTATTTCCAAAAGGG---C 729
.||.||.||.|||||.||..||||.||..| ||.|.||.||||||| |
BL02910___yqk 681 GAAGGGGGAAAACGGAATTCCGGGAAGAAGATTCTATCAAAAAGGGAGAC 730
BSNT_03522___ 730 GGAAATAAACGCACTCATCATGTCCATATGTACGAACA--GGGAAACCCT 777
|| ||.||.||.||.|||||||||.||||.||| | |||.|.|||
BL02910___yqk 731 GG----AAGCGTACACACCATGTCCATCTGTATGAA-AGCGGGCATCCC- 774
BSNT_03522___ 778 GCTATTGAAAGGCATCT---GTTATTCAGAGATTATCTCAGAGCTCATCC 824
|.|||...|.||||||| || ||| |.||||||.|.| || |||
BL02910___yqk 775 GATATCAGACGGCATCTCGCGT--TTC-GGGATTATTTAA----TC-TCC 816
BSNT_03522___ 825 AAACAT----AGCG----AAAGAATACGCCGTTCTCAAAAAACAGCTGGC 866
||| |||| .|||||||.||.|..||.||.|...|||||||
BL02910___yqk 817 ---CATCCGGAGCGGGCCGAAGAATATGCTGCACTGAAGATGAAGCTGGC 863
BSNT_03522___ 867 GGCCCAG------CACCCTGACAGCATCAATCAG--TATATACAAGGGAA 908
|| || |..|.||||| .|.||| |||||..|.||.||
BL02910___yqk 864 GG---AGATGTTTCCGCTTGACA-----TAGCAGGCTATATTGACGGCAA 905
BSNT_03522___ 909 AGATGAG----TGGATCA---AGACT---------GCAGAAGAAAATGCG 942
| || |||||.| ||||| ||.|| |.||||.|
BL02910___yqk 906 A----AGCGGCTGGATAAAAGAGACTGAGCGCTTGGCTGA--ACAATGGG 949
BSNT_03522___ 943 AA---GCGGTGGAAAAAAGG-CAGA-AACAATGCGAATGGCAGTATTGTA 987
|| ||||.|| ||| |||| ||
BL02910___yqk 950 AAAAGGCGGAGG-----AGGACAGATAA---------------------- 972
BSNT_03522___ 988 TGCTACAATAGCGAAAATGATGAAAACGGGGGTTTCACCTTATGA 1032
BL02910___yqk 972 --------------------------------------------- 972
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