Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01703 and BL02904
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:11
# Commandline: needle
# -asequence dna-align/BSNT_01703___yhaI.1.5803.seq
# -bsequence dna-align/BL02904___yhaI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01703___yhaI-BL02904___yhaI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01703___yhaI-BL02904___yhaI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01703___yhaI
# 2: BL02904___yhaI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 360
# Identity: 243/360 (67.5%)
# Similarity: 243/360 (67.5%)
# Gaps: 39/360 (10.8%)
# Score: 774.5
#
#
#=======================================
BSNT_01703___ 1 ---------ATGGATCATCGCATTGAGCGATTAGAATATTACATACAATT 41
|||||.||.|||.|.|||||..|.|||||||||||..||.|
BL02904___yha 1 ATGAACTCAATGGAGCAACGCCTCGAGCGGCTGGAATATTACATCAAACT 50
BSNT_01703___ 42 ATTAGTGAAAACAGTAGATATGGACAG-GTACCCCTTCTATGGGCTTCTC 90
.|||.||||.|..|..|||||||| || |||.||.|.||||....|
BL02904___yha 51 GTTATTGAACAATGCGGATATGGA-AGAGTATCCGTACTATAAAAT---- 95
BSNT_01703___ 91 ATTGAT---AAAGGGCTGAGCA-AGGAAGAAG---GGGAAGCGGTTATGA 133
|||||| ||||||||.|.|| ||||||||| .||||.||| ..|
BL02904___yha 96 ATTGATCGAAAAGGGCTTATCAGAGGAAGAAGCAAAGGAAACGG---AAA 142
BSNT_01703___ 134 GGATATGCGACGAATTGTCGGAAGAGCTGGCAACACAAAAAGCGCAAGGA 183
.|.|.|||||.||..|.||..|.|||||.|.|.|||||||||||||||||
BL02904___yha 143 AGCTGTGCGAAGAGCTCTCAAAGGAGCTTGAAGCACAAAAAGCGCAAGGA 192
BSNT_01703___ 184 TTTGTAACCTTTGATAAGCTCCTTGCGCTTTTTGCCGGACAGCTGAATGA 233
|||||.|..||.|||.|.|||||..|||||||||||||||||.|.|||||
BL02904___yha 193 TTTGTGATGTTCGATCATCTCCTCACGCTTTTTGCCGGACAGTTAAATGA 242
BSNT_01703___ 234 AAAATTAGATGTTCATGAAACGATTTTTGCCCTGTATGAG-CAGGGACTT 282
||||.|.||.||.||.|||||||||||.||||| |...|| ||.||.|||
BL02904___yha 243 AAAACTTGAAGTGCACGAAACGATTTTCGCCCT-TCACAGACAAGGTCTT 291
BSNT_01703___ 283 TATCAAGAGCTGATG---GAAGTCTTTATCGACATCATGAAGCATTTTGA 329
||..||..||||||| ||| ||.|||..|||.||.|.|||.|..||
BL02904___yha 292 TACAAACCGCTGATGAGCGAA---TTCATCAGCATTATCAGGCAGTACGA 338
BSNT_01703___ 330 T-----TAA- 333
| |.|
BL02904___yha 339 TCTGGCTTAG 348
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