Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01603 and BL02901
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_01603___yhxB.1.5803.seq
# -bsequence dna-align/BL02901___pgcA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01603___yhxB-BL02901___pgcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01603___yhxB-BL02901___pgcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01603___yhxB
# 2: BL02901___pgcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1800
# Identity: 1282/1800 (71.2%)
# Similarity: 1282/1800 (71.2%)
# Gaps: 105/1800 ( 5.8%)
# Score: 4354.0
#
#
#=======================================
BSNT_01603___ 1 ATGACTTGGAGAAAGAGCTATGAACGCTGGAAACAGACAGAACATTTAGA 50
||||..|||||||.|||||||||||||||||.|.|.|.||||.|.|||||
BL02901___pgc 1 ATGAGCTGGAGAACGAGCTATGAACGCTGGAGAAACAAAGAAAACTTAGA 50
BSNT_01603___ 51 TCCGGAATTAAAAGAGCGCCTTATTGAATTAGAGGGAGATGAACAGGCCC 100
|.|.||||||||||.||..|||.|.|||...||.|||.|||||.|.|..|
BL02901___pgc 51 TTCCGAATTAAAAGCGCTTCTTTTGGAAGCGGAAGGAAATGAAAAAGAAC 100
BSNT_01603___ 101 TTGAGGACTGTTTCTATAAAGACCTTGAATTCGGTACCGGCGGAATGCGC 150
|.|||||.||.||.||||||.|.|||||.||.|||||.|.|||.||||||
BL02901___pgc 101 TAGAGGATTGCTTTTATAAAAAACTTGAGTTTGGTACAGCCGGTATGCGC 150
BSNT_01603___ 151 GGAGAAATCGGCGCCGGG-ACAAATCGGATGAATATTTACACTGTGCGCA 199
||.||.||||| .||||| .|.||.||.|||||..||||.||.||.||||
BL02901___pgc 151 GGTGAGATCGG-ACCGGGCCCGAACCGCATGAACGTTTATACGGTTCGCA 199
BSNT_01603___ 200 AAGCATCGGCCGGGTTTGCGGCATACATCTCGAAGC--AAGGTGAGGAAG 247
||||||||||.||..||||.||||||| |.|.||| |.||.|..||||
BL02901___pgc 200 AAGCATCGGCGGGCCTTGCCGCATACA--TAGGAGCGAACGGCGGCGAAG 247
BSNT_01603___ 248 CGAAAAAACGGGGCGTTGTCATTGCTTATGATTCCCGCCATAAATCTCCG 297
|.|||||.||.||||||||.||.||.||.|||||||||||.|||||.||.
BL02901___pgc 248 CAAAAAAGCGCGGCGTTGTGATCGCGTACGATTCCCGCCACAAATCGCCT 297
BSNT_01603___ 298 GAGTTCGCGATGGAAGCGGCAAAAACACTTGC-GACACAAGGCATCCAAA 346
||.||.||.||||||||.||.||.||.||.|| || |.|.|||.|.||||
BL02901___pgc 298 GAATTTGCAATGGAAGCTGCTAAGACGCTCGCAGA-AAACGGCGTTCAAA 346
BSNT_01603___ 347 CATACGTGTTTGATGAGCTTCGCCCGACGCCAGAGCTGTCATTCGCTGTC 396
|.|||||||||||.||.||.||||||||.||.||.||.||.||.||.||.
BL02901___pgc 347 CGTACGTGTTTGACGAACTGCGCCCGACACCTGAACTTTCCTTTGCGGTA 396
BSNT_01603___ 397 AGACAGCTGAACGCTTATGGAGGGATTGTGGTAACGGCAAGCCATAACCC 446
|||.|.|||||.||.|.||.|||.|||||..|.|||||.|||||||||||
BL02901___pgc 397 AGAGAACTGAATGCGTTTGCAGGTATTGTCATCACGGCGAGCCATAACCC 446
BSNT_01603___ 447 GCCTGAATATAACGGCTACAAAGTATACGGGGATGATGGCGGCCAGCTGC 496
|||||||||.||||||||.|||||.|||||.||.||.||||..|||||.|
BL02901___pgc 447 GCCTGAATACAACGGCTATAAAGTGTACGGAGAGGACGGCGCGCAGCTTC 496
BSNT_01603___ 497 CTCCAAAGGAAGCGGACATCGTCATTGAGC-AGGTAAACGCGATTGAAAA 545
|.||....||.||.||||...|||..| || |.||.||.|||||.|||||
BL02901___pgc 497 CGCCTGCTGATGCCGACAAACTCACCG-GCTATGTCAATGCGATAGAAAA 545
BSNT_01603___ 546 TGAGCTGACGATCACAG-TGGACGAAGAAAATAAGTTAAAAGAAAAAGGC 594
.||.|||...|||..|| .||| ||.|||..|...||||..||||||||.
BL02901___pgc 546 CGAACTGGAAATCGAAGCCGGA-GATGAAGCTGCTTTAACCGAAAAAGGG 594
BSNT_01603___ 595 TTAATTAAAATCATCGGTGAAGATATTGATAAAGTTTATACAGAAAAACT 644
.|.||||||||.|||||.||.||.||.|||.|||..|||...||.|||||
BL02901___pgc 595 CTGATTAAAATAATCGGCGAGGAAATCGATCAAGCGTATCTCGATAAACT 644
BSNT_01603___ 645 GACGTCCATTTCTGTACATCCTGAATTATCGG---AAGAAGTA--GATGT 689
|||.||.||||||||..|.|||| |||.| |||.|| | ||.||
BL02901___pgc 645 GACATCGATTTCTGTCAACCCTG----ATCTGGCAAAGGAG-ACCGAAGT 689
BSNT_01603___ 690 AAAGGTTGTTTTCACACCGCTGCATGGAACTGCAAATAAACCGGTCAGAC 739
.||.||..|.|||||.|||||.||.||.||.|||||.||..|.|||||||
BL02901___pgc 690 CAAAGTCATCTTCACCCCGCTTCACGGCACGGCAAACAAGTCTGTCAGAC 739
BSNT_01603___ 740 GCGGTCTTGAAGCACTCGGCTACAAAAATGTAACGGTTGTCAAAGAACAG 789
|.||.||..||||.|||||.||..||.||||.||.||.|||...||||||
BL02901___pgc 740 GGGGCCTGAAAGCTCTCGGGTATGAACATGTCACAGTCGTCCCCGAACAG 789
BSNT_01603___ 790 GAACTGCCGGATTCAAACTTCTCCACTGTTACATCGCCAAACCCGGAAGA 839
||.||.||.||..|..||||.||.||.||..|.||.||.||.||||||||
BL02901___pgc 790 GAGCTCCCTGACCCTGACTTTTCGACCGTATCTTCTCCGAATCCGGAAGA 839
BSNT_01603___ 840 GCATGCGGCATTCGAATATGCCATTAAGCTTGGGGAGGAGCAGAA----- 884
|||.||.||.||.||||||||.||.|..|| |||||.||||
BL02901___pgc 840 GCACGCCGCTTTTGAATATGCGATCAGACT-----AGGAGAAGAAAATGG 884
BSNT_01603___ 885 TGCAGATATTCTCATCGCGACAGATCCTGATGCTGACCGCCTCGGCATCG 934
.||.||.|||||.||||..||.|||||.||.||.|||||.||||||.|||
BL02901___pgc 885 AGCCGACATTCTGATCGGAACCGATCCAGACGCAGACCGGCTCGGCGTCG 934
BSNT_01603___ 935 CGGTGAAAAACGATCAAG------GCAAATATAC--AGTGCTGACAGGAA 976
|.|| |||.||||||| || ||| ||||||||||||||
BL02901___pgc 935 CTGT---AAAGGATCAAGAAGGCCGC-----TACGTAGTGCTGACAGGAA 976
BSNT_01603___ 977 ACCAAACCGGAGCGCTGCTGCTTCATTACCTGCTTTCTGAAAAGAAAAAA 1026
|.||||||||.||||||||.||.|||||.|||||.|| |.|||||
BL02901___pgc 977 ATCAAACCGGCGCGCTGCTCCTGCATTATCTGCTGTC------GCAAAAA 1020
BSNT_01603___ 1027 C------AAGGCATCCTGCCTGATAACGGTGTTGTTCTCAAAACGATCGT 1070
| |||||||.||||||||||||||.||.|||||.||||||||.||
BL02901___pgc 1021 CAGCAGAAAGGCATGCTGCCTGATAACGGCGTCGTTCTGAAAACGATTGT 1070
BSNT_01603___ 1071 CACAAGTGAAATCGGCCGTGCTGTAGCTTCTTCATTCGGCCTTGATACGA 1120
.||.||.|||||.||.||.|...|.||..||||.|||||.||.||.||||
BL02901___pgc 1071 GACGAGCGAAATGGGGCGCGACATCGCCGCTTCTTTCGGACTGGACACGA 1120
BSNT_01603___ 1121 TTGATACGCTGACAGGCTTTAAGTTTATCGGTGAAAAGATTAAGGAATAC 1170
|.||.||||||||.||||||||.||.|||||.|||||.||.||..|||..
BL02901___pgc 1121 TCGACACGCTGACCGGCTTTAAATTCATCGGAGAAAAAATCAAACAATTT 1170
BSNT_01603___ 1171 GAGGCATCAGGCCAGTATACCTTCCAATTCGGTTATGAAGAGAGCTACGG 1220
||.|||||.|||.|.|||.|.|||||||||||||||||.||.||||||||
BL02901___pgc 1171 GAAGCATCGGGCGAATATGCTTTCCAATTCGGTTATGAGGAAAGCTACGG 1220
BSNT_01603___ 1221 TTATTTAATCGGGGATTTTGCCCGCGATAAGGACGCCATTCAGGCTGCGC 1270
.||.||.|||||.||.||.||..|.||.|||||.|||.|.|||||.||.|
BL02901___pgc 1221 CTACTTGATCGGCGACTTCGCAAGGGACAAGGATGCCGTCCAGGCCGCAC 1270
BSNT_01603___ 1271 TTTTGGCAGTTGAAGTTTGCGCGTTCTATAAAAAACAGGGAATGTCTTTG 1320
|..|.||.||||||||.|||||.|||||||||||.|||||||..||..|.
BL02901___pgc 1271 TGCTTGCCGTTGAAGTATGCGCCTTCTATAAAAAGCAGGGAAAATCGCTT 1320
BSNT_01603___ 1321 TATGAGGCGCTCATC-AATCTCTTTAACGAGTATGGTTTTTATCGTGAAG 1369
|||||.|.||||.|| ||| |.|.|||...||..||.||.|||.|.||||
BL02901___pgc 1321 TATGACGGGCTCCTCGAAT-TGTATAAATCGTTCGGCTTCTATAGAGAAG 1369
BSNT_01603___ 1370 GGCTGAAATCCCTGACGCTGAAAGGCAAACAAGGAGCAGAGCAAATTGAA 1419
|..||||.||||||||..|.|||||.|||.|.|||||.||||||||.|.|
BL02901___pgc 1370 GCTTGAAGTCCCTGACCTTAAAAGGAAAAGAGGGAGCGGAGCAAATCGCA 1419
BSNT_01603___ 1420 GCGATTCT-TGCTTCCTTCAGACAAAATCCGCCGCAGAAAATGGCGGGCA 1468
||.||.|| .|| .|.||||||.||.|.|||||.|.....||.||.||.|
BL02901___pgc 1420 GCCATCCTCAGC-ACATTCAGAGAACAGCCGCCTCTTTCCATCGCCGGAA 1468
BSNT_01603___ 1469 AACAGGTTGTCACAGCAGAAGATTACGCTGT---AAGCAAACGGACGCTT 1515
||.|.||.||..|.||.|||||.|| |.| |.|.||.||||||||.
BL02901___pgc 1469 AAGATGTCGTATCCGCCGAAGACTA---TTTGACAGGGAAGCGGACGCTG 1515
BSNT_01603___ 1516 CTGACTGAAAGCAAAGAAGAAGCCATCGACTTGCCAAAATCAAATGTATT 1565
||.|..||||.||||...|||.|.||||||.|.||.|||||.|||||.||
BL02901___pgc 1516 CTAAAGGAAAACAAAAGGGAAACGATCGACCTTCCGAAATCCAATGTTTT 1565
BSNT_01603___ 1566 GAAATACTTCCTGGAAGACGGGTCTTGGTTCTGTCTTCGTCCTTCTGGAA 1615
||||||.|||||.||||||||.||.||||||||.||.|||||.||.||||
BL02901___pgc 1566 GAAATATTTCCTTGAAGACGGCTCATGGTTCTGCCTCCGTCCATCAGGAA 1615
BSNT_01603___ 1616 CTGAGCCGAAGGTGAAATTTTATTTCGCCGTAAAAGGGTC-------ATC 1658
|.|||||.||.|||||||||||||||||.||.||||| | ||
BL02901___pgc 1616 CAGAGCCTAAAGTGAAATTTTATTTCGCGGTCAAAGG--CCGAACCAAT- 1662
BSNT_01603___ 1659 TTTGGAAGACAGTGAACAGCGTCTTGCCGCCCT-------TT--CTGAAG 1699
|||||.||.|| |||| ||| || || |.||.|
BL02901___pgc 1663 ----GAAGAAAGCGA--AGCG-CTT------CTCAATCAATTGACAGACG 1699
BSNT_01603___ 1700 ATGTAATGAAGACGGTGGATGAAATTGTTGAGTCGACGGCAAA---ATAA 1746
|.||.|||||.|...|.||.||.|||||..|..||||..|||| .|||
BL02901___pgc 1700 AAGTGATGAAAAAAATCGACGATATTGTAAAAGCGACCTCAAATTCGTAA 1749
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