Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00535 and BL02900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:10
# Commandline: needle
# -asequence dna-align/BSNT_00535.1.5803.seq
# -bsequence dna-align/BL02900.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00535-BL02900.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00535-BL02900.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00535
# 2: BL02900
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity: 271/606 (44.7%)
# Similarity: 271/606 (44.7%)
# Gaps: 261/606 (43.1%)
# Score: 481.0
#
#
#=======================================
BSNT_00535 1 ATGAATAATCTGCATAATAGACTTTCAGGCGTGAAT--GGGAAAAATA-A 47
|||| |||.|| ||| .||| ||||..|||| |
BL02900 1 ATGA-----------AATGGA---TCA-----AAATCGGGGATGAATACA 31
BSNT_00535 48 GAGGGTAAAAGAAAAAGAACAAAAAATCTGGTCGGAGATT-----GGGAT 92
.|| |||||||||.|| ||.| ||| |.||
BL02900 32 TAG---AAAAGAAAATGA--------------CGCA-ATTTTTCAGCGA- 62
BSNT_00535 93 GATAG-CGGGAGCATTTGCGCTGC-----------TTGATGTGATCATCC 130
|| |||.|..|||..|||||| |.|||.|||||||||
BL02900 63 ---AGCCGGTACGATTGTCGCTGCCATTTTATGTTTGGATATGATCATCC 109
BSNT_00535 131 GCGGCATTATGTT---------TGAATTTCCGTTTAAAGAAT-------- 163
|||||.||||.|| ||.| ||||..||.|..||
BL02900 110 GCGGCTTTATTTTAGGAAAACCTGCA--TCCGAATACATCATCAGTGCCA 157
BSNT_00535 164 ----------GGGC--TGCAAGCCTTGTGTTTTTGTTCATCATTATCTTA 201
||.| ||||.|| || |.|||||.|| |..||||||.
BL02900 158 TCGGTTTTGCGGTCTATGCAGGC--TG-GATTTTGCTC--CGCTATCTTT 202
BSNT_00535 202 T------ATTACTGCATCAGGGCTGCGGCATCCGGA-ATGCTCATGCCGA 244
| ||| ||.|| ||||||| || |.||.|||
BL02900 203 TGTCGGGATT--TGAAT------------ATCCGGAGAT-CGCAGGCC-- 235
BSNT_00535 245 GAATAGACACCAAAGAAGAACTGCAAAAACGGGTGAAGCAGCAGCGAATA 294
|||.|.| |.|..|.||||| || |||.|
BL02900 236 -AATCGGC---------GTATCGGAAAAA------AA--------GAAAA 261
BSNT_00535 295 GAATCAATTGCGGTC----GCCT---TTGCGG-----TAGTGGTGCTTAC 332
|| |||.||.|.| |||| ||.||| ||.| ||||
BL02900 262 GA---AATCGCAGCCCTCAGCCTCGCTTCCGGCCTCATATT--TGCT--- 303
BSNT_00535 333 GATGT--ACG---------ACAGGGGGATTCCCCATA------CATTC-- 363
||.| ||| ||.|| |||| |||.|
BL02900 304 -ATTTTAACGCTTCTCTTTACCGG---------CATACCAGAGCATCCCG 343
BSNT_00535 364 ----TTCGCTTGGCTGAA----AATGAT--TCTTCTTTTTATCGTCTGCG 403
||.|.|||.||..| .|||.| |.||.|||..||
BL02900 344 GCAGTTGGGTTGACTTTATTGGTATGGTGATGTTGTTTGCAT-------- 385
BSNT_00535 404 GCGGCGTTCTGTTTCTG-----CTTCGGTATGTGATTGTG-AAGCTGGCT 447
.|.|||..|||||| ||| |||.|..|||.| || |..||
BL02900 386 ---TCCTTCATTTTCTGATCAACTT---TATCTCGTTGCGCAA--TTCCT 427
BSNT_00535 448 TACAGAAGAGCGGTAAAAGAAGA-----------AATAAAAAAGAAATCA 486
|.|.||| |||..|||| |.|||
BL02900 428 TTCGGAA-------AAATCAAGATCTATTAGATGATTAA----------- 459
BSNT_00535 487 TCTTGA 492
BL02900 459 ------ 459
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