Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01605 and BL02898
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_01605___yhcY.1.5803.seq
# -bsequence dna-align/BL02898___yhcY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01605___yhcY-BL02898___yhcY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01605___yhcY-BL02898___yhcY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01605___yhcY
# 2: BL02898___yhcY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1278
# Identity: 746/1278 (58.4%)
# Similarity: 746/1278 (58.4%)
# Gaps: 267/1278 (20.9%)
# Score: 1878.5
#
#
#=======================================
BSNT_01605___ 1 -----GTGAG---CAAAATGAGGATGGAAAAATTAAAAACGCTGAAAACG 42
|..|| ||.| |.|.||||||.|.||||||||.|||...
BL02898___yhc 1 TTGCGGGAAGACACACA-----GTTTGAAAAACTGAAAACGCTCAAAGAA 45
BSNT_01605___ 43 ATTGCCGAAACCTTAAATCAAGGGCACGATATCAAAGCAACACTGGATGA 92
||.||.|||||.|||||..|||||.|||||.|.||.|.|||.||..|||.
BL02898___yhc 46 ATAGCGGAAACTTTAAACGAAGGGAACGATCTAAAGGAAACGCTCCATGC 95
BSNT_01605___ 93 GGTTTTAAAAGAGTTGCTGAGTCT-----GACAAACCTTCAATCCGG-AT 136
.||||||||..||.||||..|.|| ||| ||||..||| ||
BL02898___yhc 96 CGTTTTAAAGAAGCTGCTCCGCCTAACGGGAC------TCAAAACGGCAT 139
BSNT_01605___ 137 GGATTTTTTTGATCGAAGAAGATGGGTCTTATACGTTAGC--------GG 178
||.|||||.|||||||.|||.|.||| ||| ||
BL02898___yhc 140 GGCTTTTTCTGATCGATGAAAAGGGG-----------AGCTTTGAACTGG 178
BSNT_01605___ 179 CCGACGCTTATCTGCCC-CCGGCTTTAAGCC--------GCAAGGAAAAA 219
| .||| ||.|||| ||.||.|.||||| .| ||.||||
BL02898___yhc 179 C---TGCT--TCGGCCCGCCTGCCTCAAGCCCTTTCTTACC--GGCAAAA 221
BSNT_01605___ 220 GTGCTGA-TGTGCGAAGGGGAG-TGTTACTGCCTGACGAAATTCAATA-A 266
..|.|.| |.|||||| ||.|| ||.|||||.|| .||| ||||| |
BL02898___yhc 222 CCGTTTACTATGCGAA-GGAAGCTGCTACTGTCT--TGAA---CAATACA 265
BSNT_01605___ 267 CGGAGGGCTTAGAAAGGCTG----------CAAATATCATGAACTGCAAA 306
.||| .||||.|||| .|||||||||..|||||...
BL02898___yhc 266 GGGA------CGAAAAGCTGGACAGGGCGAAAAATATCATCCACTGCCGG 309
BSNT_01605___ 307 CG------------CATCGAATCAGCAGAAAACCTGCATTGTTTTGACAC 344
|| ||| |||.|||.||| |.|.| ||..|
BL02898___yhc 310 CGGATTACGACGGCCAT-GAAACAGAAGA----CAGGA-------GATCC 347
BSNT_01605___ 345 AGAAGGGATTACGCATCATGCAACTGTGCCTTTAGAAGACGGGGAC---- 390
.|||||.||.||.|||||||||||.||.||..| |.|.|||
BL02898___yhc 348 GGAAGGCATCACCCATCATGCAACCGTCCCGCT------CAGTGACCAAA 391
BSNT_01605___ 391 AGAA--GATTCGGATTGTTAAATGTGGCGGCGGCCGGAAAAACCATGTTT 438
|||| |.|||||.|||.|.||.||.|||||..|.||.|||| ||
BL02898___yhc 392 AGAAGCGGTTCGGTTTGCTGAACGTTGCGGCACCGGGCAAAA------TT 435
BSNT_01605___ 439 GAT---------GAGGAAGAGCTGCATTTACTCGAATCTGTCGCCTTTCA 479
.|| |.|||| |||....|.||||||.||||.||..|.||
BL02898___yhc 436 CATTTCAGCCGCGGGGAA---CTGGCGCTCCTCGAAGCTGTTGCTCTGCA 482
BSNT_01605___ 480 GATCGGAACGGCAATCCAGCGTATGAGGCTTTCCGAATATCAACAAAAAA 529
.|||||.|.|||.|||.|.||.|||||||||.|.|||.|.||.||||||.
BL02898___yhc 483 AATCGGGATGGCGATCAAACGGATGAGGCTTGCTGAACAACAGCAAAAAC 532
BSNT_01605___ 530 A--TGCT-CTTTTAATGGAGC----GTAACCGCCTCGCTCAGGAGCTT-C 571
| |||| || ||.| |.|||.|..|.|||||||| ||| |
BL02898___yhc 533 ACCTGCTGCT-------GACCGAAAGAAACAGATTGGCTCAGGA-CTTGC 574
BSNT_01605___ 572 ACGATTCAGTCAATCAAATGCTGTTTTCCGTCAGTTTAACTGCCAAAGCT 621
|.|||||.||.|||||||||||.|||||..||||.||.||.||.|||||.
BL02898___yhc 575 ATGATTCCGTTAATCAAATGCTTTTTTCGCTCAGCTTGACCGCTAAAGCG 624
BSNT_01605___ 622 GCGAAGACACTAACAAA--AGATGAGAATTTACA-GCAGATGATTGAATT 668
|||..|..|.|.|||.| ||..|..||| || |.|.|||.|.||.||
BL02898___yhc 625 GCGGGGGAAATGACAGACCAGCCGGAAAT---CAGGGAAATGCTCGAGTT 671
BSNT_01605___ 669 CATCCAAAACCTATCACAGGACGCGCTCGCAGAAATGAAAGCGTTAATTT 718
.||.|||||.||.||.||.||.|||||....||.|||...||||||||||
BL02898___yhc 672 TATGCAAAATCTTTCTCATGAAGCGCTTCTTGAGATGCGGGCGTTAATTT 721
BSNT_01605___ 719 GGCAGCTTCGTCCCGGAGGATTGGAAAAAGGGCTGGCTGAAGCCATTAAA 768
|||||||..|.|||...||..|||||.|||||.|.||.|..||..||.||
BL02898___yhc 722 GGCAGCTCAGGCCCCAGGGGCTGGAAGAAGGGTTAGCGGCGGCTCTTGAA 771
BSNT_01605___ 769 AGCTATG-----GTGCGCTCATTGG-ATTGAAGATCATTTTTA--CACAA 810
|..|||| |||| |.|| .||.||| |.||.||.| |.||
BL02898___yhc 772 AAATATGCGGAAGTGC-----TCGGCCTTCAAG-TAATCTTCAAGCTCA- 814
BSNT_01605___ 811 AAAGGC--TGTCCT--GTTCTG------ACTGATGAGCAGGAGCATATGC 850
|| |||.|| | |||| .|||.|||| |.|| ||.
BL02898___yhc 815 ----GCGATGTGCTCCG-TCTGCCCCCTTCTGTTGAG-----GAAT-TGA 853
BSNT_01605___ 851 TATGGCGTGTCGTCCAGGAAGCTTTAAATAACTGCAAAAAGCATGCCGG- 899
|.|||||..|...|||||||||..|.||.||.|||||||||||||||||
BL02898___yhc 854 TGTGGCGGCTGAGCCAGGAAGCCCTCAACAATTGCAAAAAGCATGCCGGT 903
BSNT_01605___ 900 --AA--CGGATACGGCGT--------ATGT----TAGTCTGACTG-CTTC 932
|| ||.|||| ..|| |||| .|||| |.||| |.||
BL02898___yhc 904 GCAAGCCGCATAC-AAGTGAAAATCAATGTATTCCAGTC-GTCTGCCGTC 951
BSNT_01605___ 933 TTTGTGCCATGCGGAGCTGGATATCATCGATCATG-GGGC---GGGATTT 978
| |||| .|||||..||| .||| ||| |||
BL02898___yhc 952 T----------------TGGA---AATCGAAGATGACGGCAAAGGG-TTT 981
BSNT_01605___ 979 CGCTATGAAGCGCATGCCGGTC-TGCCTTCACTTGGCATCAAGGGTATGA 1027
|..||.||..|..||| .||.| |.||..|.|||||..|.||.||.||||
BL02898___yhc 982 CAGTACGATCCTAATG-TGGACATTCCGACGCTTGGGCTGAAAGGAATGA 1030
BSNT_01605___ 1028 AAGAACGGGCGGAAAAAGCCGGCGCTAAGTTTTGGATTGAGTCAGCGCTT 1077
|.||.|||.||||||||||.||||..|.|.|||.|||....||.||..|.
BL02898___yhc 1031 AGGAGCGGACGGAAAAAGCGGGCGGCACGCTTTTGATCACCTCCGCAATC 1080
BSNT_01605___ 1078 GGAACTGGAACAAAGCTGTCCATCAGG-----CTTCCGCTAACAAGCCGA 1122
||.|..||.||||| .|||.|| .||.| |||..||| ||
BL02898___yhc 1081 GGTAAGGGGACAAA------AATCCGGGCGGTTTTGC-CTATGAAG--GA 1121
BSNT_01605___ 1123 AAAGGAGG-GGCGGTATGA--------- 1140
.||||.|| |||.|.|||.
BL02898___yhc 1122 GAAGGGGGAGGCAGGATGGAGAAGGTGA 1149
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