Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01607 and BL02897
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_01607___yhcZ.1.5803.seq
# -bsequence dna-align/BL02897___yhcZ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01607___yhcZ-BL02897___yhcZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01607___yhcZ-BL02897___yhcZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01607___yhcZ
# 2: BL02897___yhcZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 459/707 (64.9%)
# Similarity: 459/707 (64.9%)
# Gaps: 112/707 (15.8%)
# Score: 1386.0
#
#
#=======================================
BSNT_01607___ 1 ---------ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAA 41
.|||||||..|||||||.||||||||||||.||||||||||
BL02897___yhc 1 ATGGAGAAGGTGAAAATCATCATTGCCGATGATCATCATATTGTCAGAAA 50
BSNT_01607___ 42 GGGTCTGCGT-TTTTTCTTTGCCACCCAGGA--TGATATTGAAGTCGTCG 88
.||.|| |.| |||||||| |.|..||..| .|||.||||.||..|||
BL02897___yhc 51 AGGGCT-CTTGTTTTTCTT--CAAAACAAAAAGCGATTTTGATGTTATCG 97
BSNT_01607___ 89 GAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCAT-CGAA-----GAG 132
||||.|||.|.||.||.||.||.||.|||..||||.| |||| |||
BL02897___yhc 98 GAGAGGCTTCGACAGGTATCGAGGCGCTCGATGTCTTGCGAAAACGTGAG 147
BSNT_01607___ 133 ACAAAGCCGGATCTTGTGCTAATGGATCTGTCTATGCCCGAGATGGACGG 182
.|| ||..|.||..||||||||.|.||.|||||.||.||||||||
BL02897___yhc 148 GCA------GACATCGTATTAATGGATTTATCAATGCCTGATATGGACGG 191
BSNT_01607___ 183 CATT--------CAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATAC 224
|||| .||||.|.||||||||.|||| ||||..|..
BL02897___yhc 192 CATTGAGGCGACAAAGCGAATAAAAAAGGAATA--------TCCGTCTGT 233
BSNT_01607___ 225 GAATATCATTGTGCTGACGAGCTACTCTGATCAGGAGC-ACGTCATCCCC 273
.||..||||.|.||||||.|||||..|.|| |..|||| |.||.||.|||
BL02897___yhc 234 CAAAGTCATAGCGCTGACAAGCTATGCGGA-CGAGAGCTATGTGATTCCC 282
BSNT_01607___ 274 GCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCCCGA 323
||..|.|||||.||.||....||.|||||..|.||.||..|.|||||.||
BL02897___yhc 283 GCCATCCAGGCGGGAGCCTGTGCCTATCAGCTGAAAGACGCCGAGCCTGA 332
BSNT_01607___ 324 GGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGA-ATACAAGCTT 372
.|||.|.||..|.||..|..|...|||..||||.|| || ||||
BL02897___yhc 333 TGAACTTGTCGAGACGATCCGCGCAGTTTATGGCGG-GAGATAC------ 375
BSNT_01607___ 373 TC----------TACAGCTATTATGCCCCATGTGCTAACA-CATATGAAA 411
|| .|| ||.|||.||||.|| ||..|| |||.||
BL02897___yhc 376 TCATTGGATCCGAAC----ATCATGTCCCACGT-CTTTCACCATGTG--- 417
BSNT_01607___ 412 AATCAGCACGACCCGGA----AAAAGAAAAATACTATCAATTAACTAGAA 457
||| ||.| |||| |||..|||||||| |||||||.||.|..|
BL02897___yhc 418 --TCA-CAGG---CGGATGAGAAAGAAAAAATAC-ATCAATTGACAAATA 460
BSNT_01607___ 458 GGGAAAAAGACGTTCTGACT-GAAATAGCGAACGGGAAAAGCAATAAAGA 506
|.||||||||.||| |.|.| |||||..||||.|||||||||||||||||
BL02897___yhc 461 GAGAAAAAGATGTT-TTATTGGAAATTACGAAAGGGAAAAGCAATAAAGA 509
BSNT_01607___ 507 AATCGCAGCAGCCTTGTTTATTTCA--GAAAAAACAGTAAAAACCCATGT 554
|||.||||||.|.||.|||| ||| ||||||||.||||||||||||||
BL02897___yhc 510 AATTGCAGCATCTTTATTTA--TCAGCGAAAAAACGGTAAAAACCCATGT 557
BSNT_01607___ 555 ATCGAATCT--TTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGC 602
|||.||||| ||| ||||.||||...|..||||||||||||||||.||
BL02897___yhc 558 ATCCAATCTGCTTT--CAAAGCTTGGCTTATCCGATCGCACGCAAGCCGC 605
BSNT_01607___ 603 GCTTTTCGCAGTGAAA-------TATAATC----TGAATGGAGAGATCTC 641
||||||.|||||.||| ||.|| | |||..||||||
BL02897___yhc 606 GCTTTTTGCAGTAAAACACGGACTACAA-CAAAATGACGGGAGAG----- 649
BSNT_01607___ 642 AAAATGA 648
.||||
BL02897___yhc 650 --GATGA 654
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