Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01627 and BL02889
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01627___yhdF.1.5803.seq
# -bsequence dna-align/BL02889___yhdF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01627___yhdF-BL02889___yhdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01627___yhdF-BL02889___yhdF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01627___yhdF
# 2: BL02889___yhdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 911
# Identity: 623/911 (68.4%)
# Similarity: 623/911 (68.4%)
# Gaps: 82/911 ( 9.0%)
# Score: 2026.0
#
#
#=======================================
BSNT_01627___ 1 GTGAACCCAATGG---ACAGACAAACAGAAGGACAAGAACCGCAGCATCA 47
.||||.|| || |||||||.|||||.|||||..||.||||..|.||
BL02889___yhd 1 ATGAATCC---GGCAAACAGACAGACAGATGGACAGAAAGCGCAAAAACA 47
BSNT_01627___ 48 GGACAGACAGCCGGGCATTGAGTCA-AAAATGAATCCGCTGCCGCTGTCA 96
.||.|.|||.||.||...|||| || ||.|||...||.||.|||||.||.
BL02889___yhd 48 AGAAAAACAACCCGGTGCTGAG-CACAAGATGGTGCCCCTTCCGCTCTCG 96
BSNT_01627___ 97 GAGGACGAGGATTATCGAGGAAGCGGAAAACTGAAAGGAAAAGTCGCGAT 146
||.|||...||.||...|||||||||.|||.|.|||||||||...|||||
BL02889___yhd 97 GAAGACCGCGACTACAAAGGAAGCGGCAAATTAAAAGGAAAAACAGCGAT 146
BSNT_01627___ 147 CATTACTGGAGGCGACAGCGGAATAGGGAGAGCAGCAGCTATTGCCTTTG 196
.|||||.|||||.|||||||||||.||.|||||.||.||.|||||.|..|
BL02889___yhd 147 TATTACCGGAGGAGACAGCGGAATCGGCAGAGCGGCCGCCATTGCATACG 196
BSNT_01627___ 197 CTAAAGAGGGGGCTGATATCTCCATTCTATACTTAGACGAGCATTCGGAC 246
|.|||||.||.||.||.||..||.|..|.|||||.||.||.||...|||.
BL02889___yhd 197 CCAAAGAAGGTGCCGACATTGCCGTCATGTACTTGGATGAACACAAGGAT 246
BSNT_01627___ 247 GCAGAGGAAACACGTAAA---CGGATCGAAAAGG-------AGAATGTCC 286
||.|||||||| .||| ||.||||||.||| ||||
BL02889___yhd 247 GCCGAGGAAAC---GAAAGAGCGAATCGAACAGGAAGGAGCAGAA----- 288
BSNT_01627___ 287 GCTGCCTGCTT-ATCGCGGGAGATGTCGGGGACGAAAACCATTGTGAACA 335
||||| ||| ||..|.|||||||||||.||.||....|||||..||..
BL02889___yhd 289 --TGCCT-CTTGATTCCCGGAGATGTCGGTGATGAGGCGCATTGCAAATC 335
BSNT_01627___ 336 AGCTGTGCAGCAAACAGTCGACCATTTTGGTAAACTCGATATCTTAGTGA 385
|.||||..|..||||.||..|.||.|||||....||.||.||..|.||||
BL02889___yhd 336 ATCTGTCGAAAAAACGGTGAATCACTTTGGCGGGCTTGACATTCTCGTGA 385
BSNT_01627___ 386 ACAACGCCGCTGAACAGCATCCCCA-----GGACAGCATTCTCAATATTT 430
||||.||.||.|||||||||||.|| |||.||.| .||||||
BL02889___yhd 386 ACAATGCTGCAGAACAGCATCCGCAAAAAGGGATAGAA-----GATATTT 430
BSNT_01627___ 431 CAACAGAACAGCTGGAAAAAACCTATCGCACAAATATTTTTTCCATGTTT 480
|.||.||||||||.||||.|||.|.|.|.||.||||||||.||||||||.
BL02889___yhd 431 CGACCGAACAGCTTGAAAGAACGTTTAGAACGAATATTTTCTCCATGTTC 480
BSNT_01627___ 481 CATATGACGAAGAAAGCTTTGC-CTCACCTGCA------AGAGGGGAGTG 523
|||||||| .||||| | |.|.||.||| .||.||.||.|
BL02889___yhd 481 CATATGAC---AAAAGC----CGCGCTCCCGCATTTAGGGGAAGGCAGCG 523
BSNT_01627___ 524 CCATTATTAATACGACATCGATTACCGCTTATGAAGGGGATACGGCGTTA 573
|.||.||.|||||..|||||||.||.||.||||||||...|.|||||.|.
BL02889___yhd 524 CGATCATCAATACCGCATCGATCACGGCGTATGAAGGCAGTCCGGCGCTG 573
BSNT_01627___ 574 ATTGATTATTCCAGCACAAAGGGTGCGATTGTTTCCTTTACGCGTTCCAT 623
|||||.|||||.|||||||||||.||||||||..|.|||||.|||||.||
BL02889___yhd 574 ATTGACTATTCGAGCACAAAGGGCGCGATTGTCGCGTTTACCCGTTCGAT 623
BSNT_01627___ 624 GGC-GAAGTCGCTCG-CAGATAAAGGCATCAGAGTGAATGCGGTGGCGCC 671
||| |.| ||.||.| || |.|||||.||..|.||.||.||.||.|||||
BL02889___yhd 624 GGCTGCA-TCCCTTGTCA-AAAAAGGAATACGCGTCAACGCTGTAGCGCC 671
BSNT_01627___ 672 CGGTCCGATTTGGACACCGCTTATTCCGGCGACATTCCCTAAGGAAAAAG 721
.|||||.||||||||.||||||||||||||.||.||.||...|||||||.
BL02889___yhd 672 GGGTCCCATTTGGACGCCGCTTATTCCGGCTACTTTTCCGCCGGAAAAAA 721
BSNT_01627___ 722 TGAAACAGCACGGCTTGGATACCCCAATGGGAAGACCGGGACAGCCGGTT 771
.|.||.|.||||||...|||||.||.||||||||.||.||||||||...|
BL02889___yhd 722 CGGAAAAACACGGCACAGATACGCCGATGGGAAGGCCCGGACAGCCTTCT 771
BSNT_01627___ 772 GAGCA---TGCAG-GCGCCTATGTTCTGCTGGCGTCTGACGAATCTTCCT 817
||.|| ||||| | |||||||||||.||.||.|||||.||.||.|
BL02889___yhd 772 GAACACGCTGCAGTG----TATGTTCTGCTCGCTTCAGACGACTCCTCTT 817
BSNT_01627___ 818 ATATGACAGGGCAGACCATTCATGTGAATGGCGGACGTTTTATTTCAACG 867
||||||||||.|||||.||.||..|.||.||||||.|.| |.|
BL02889___yhd 818 ATATGACAGGACAGACGATCCACATCAACGGCGGAAGAT--------ATG 859
BSNT_01627___ 868 TGA-------- 870
|||
BL02889___yhd 860 TGACGACATAA 870
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