Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01646 and BL02882
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_01646___yhdT.1.5803.seq
# -bsequence dna-align/BL02882___yhdT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01646___yhdT-BL02882___yhdT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01646___yhdT-BL02882___yhdT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01646___yhdT
# 2: BL02882___yhdT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1453
# Identity: 1002/1453 (69.0%)
# Similarity: 1002/1453 (69.0%)
# Gaps: 146/1453 (10.0%)
# Score: 3280.0
#
#
#=======================================
BSNT_01646___ 1 ATGGACGATATTGACAGTCTGATTTTAATTGGCGTGCTCATTGCTTTAAC 50
|||||||||||||..||||||||..|.||.||..|.||.|||||||||||
BL02882___yhd 1 ATGGACGATATTGTTAGTCTGATAATCATCGGGATTCTGATTGCTTTAAC 50
BSNT_01646___ 51 CGCGTTTTTCGTTGCAAGCGAGTTTGCGATTGTTAGAGTGAGGAGATCCA 100
.||.||||||||.|||...||.|||||||||||.|||||.||.||.|||.
BL02882___yhd 51 TGCTTTTTTCGTGGCATCGGAATTTGCGATTGTCAGAGTCAGAAGCTCCC 100
BSNT_01646___ 101 GAATAGATCAGCTTATCACAGAAGGAAACAAACGGGCGATACTCG----- 145
|.||.||||||||.||..|.||||||||||||..||||.|.|.||
BL02882___yhd 101 GTATTGATCAGCTGATTGCTGAAGGAAACAAAAAGGCGGTCCGCGCAAAA 150
BSNT_01646___ 146 CAAGGCGTGTCATTACAGATTTGGATGAATATTTATCCGCATCCCAGCTG 195
||||..|||| |.||||||||||||||..|.||.||.|.||||||.
BL02882___yhd 151 CAAGTGGTGT-----CGGATTTGGATGAATACCTTTCAGCTTGCCAGCTC 195
BSNT_01646___ 196 GGCATTAC-ATTGACATCAATCGGGCTTGGC-GTACTGGGTGAGCCGGCC 243
||.||||| ||| |||.|..|.||.||.||| |.| ||||.||||||.|.
BL02882___yhd 196 GGTATTACGATT-ACAGCGCTTGGACTCGGCTGGA-TGGGGGAGCCGACG 243
BSNT_01646___ 244 TTTGAACGGCTGCTGCATCCACTGTTTGAACCGCTCGGCTTGC------C 287
.||.||..|.||||||||||..|.|||||| .||.||| |
BL02882___yhd 244 GTTAAAAAGGTGCTGCATCCGGTCTTTGAA------AGCCTGCATGTTTC 287
BSNT_01646___ 288 AGACTCGGTTTCACATGCAGCCTCTTTTGCAGTCGCGTACGGC------- 330
.|.|.|.||.|| |||..|||||| ||||.|| .|..||
BL02882___yhd 288 TGGCGCTGTATC----GCACGCTCTTT--CAGTTGC-CATTGCATTTTTA 330
BSNT_01646___ 331 TTGATCACGTTCCTGCACGTTGTTGTAGGTGAACTGGCCCCGAAAACGGT 380
.||||.||.||||||.||||.||.||.||.|||||.||.||.|||||..|
BL02882___yhd 331 GTGATTACATTCCTGAACGTCGTGGTTGGAGAACTCGCTCCAAAAACCAT 380
BSNT_01646___ 381 CGCGATTCAAAAGGCAGAACAGCTGACTTTACTGATAGCGGGCCCTTTGC 430
||||||||||||.||.||||||.||||..|...|.|.|||||.|||.|||
BL02882___yhd 381 CGCGATTCAAAAAGCCGAACAGATGACGCTGTGGCTGGCGGGACCTCTGC 430
BSNT_01646___ 431 GTTTATTTTAT-TTGCTCCTGTTTCCGTTTATTTGGATCCTCAATGGATC 479
..||.||..|| ||| ||.||||.|||||.||.||||..||.||.|..||
BL02882___yhd 431 ACTTTTTCAATGTTG-TCATGTTCCCGTTCATCTGGACGCTGAACGCCTC 479
BSNT_01646___ 480 GGCGCG---GCTTTTATG--CGGGATGTTCGGTTTGAAGCCTGCGTCAGA 524
.||..| || || ||||.|.|||||||||||||||||.||.||
BL02882___yhd 480 AGCCAGAGTGC-----TGACCGGGTTATTCGGTTTGAAGCCTGCTTCGGA 524
BSNT_01646___ 525 ACATGATGGTTCCCATTCTGAGGAAGAACTCAGGATGCTGTTATCTGAGA 574
|.|.||||..||||||||.||||||||.||..|.||.||||||||.||.|
BL02882___yhd 525 AAAGGATGAATCCCATTCGGAGGAAGAGCTGCGAATCCTGTTATCAGAAA 574
BSNT_01646___ 575 GTTTAAAAAACGGAGAGATTAATCCGTCTGAATATAAATATGTGAATAAG 624
|.|..||||.||||||.||.||||||||||||||||.||||||.|||||.
BL02882___yhd 575 GCTACAAAAGCGGAGAAATCAATCCGTCTGAATATAGATATGTCAATAAA 624
BSNT_01646___ 625 ATTTTTGAATTTGATAATCGGATCGCCAAAGAAATTATGATACCGCGGAA 674
||.||||||||.||.|||||.||||||||||||||||||.|.|||||.|.
BL02882___yhd 625 ATCTTTGAATTCGACAATCGAATCGCCAAAGAAATTATGGTGCCGCGTAC 674
BSNT_01646___ 675 GGAAATGGCTGCTGTGT-CAACT-GAGATGACGATGGCCGAGATGC--TT 720
||||||.|| ||.||| |..|| ||.|||.||||.|..||| || ||
BL02882___yhd 675 GGAAATCGC--CTCTGTCCCGCTGGATATGCCGATTGATGAG--GCCATT 720
BSNT_01646___ 721 GAAGTCATGCTGAAGGAAAAATACACGCGCTGGCCAGTC-ACAGATGGAG 769
...|||||||||.|.||||||||.|||||||||||.||| |.| |.||.|
BL02882___yhd 721 TCGGTCATGCTGCAAGAAAAATATACGCGCTGGCCCGTCTATA-AAGGCG 769
BSNT_01646___ 770 ACAAAGA-CAGTGTGATCGGTTTGGTCAATACGAAGCATTTGTTTTCTGA 818
|.||.|| || |||.|||||..||.||||||||||.||..|||||.|.||
BL02882___yhd 770 ATAAGGATCA-TGTCATCGGCATGATCAATACGAAACAGCTGTTTACGGA 818
BSNT_01646___ 819 TTTGCTGTTTATGACAGAAGAAGAACGAA---------------TGAAGA 853
|.||||..|.|||.||||.|.||| ||| |||||.
BL02882___yhd 819 TATGCTCATGATGTCAGAGGCAGA--GAAAAAGCTGCTGTCTCTTGAAGC 866
BSNT_01646___ 854 TGACGATCCATCCGTATGTGAGGCCGGTCATCGAAGTGATTGAAACGATC 903
..||| ||||| |||||.||.|||||.||||||||..|.
BL02882___yhd 867 CTACG-----TCCGT--------CCGGTTATTGAAGTCATTGAAACCGTG 903
BSNT_01646___ 904 CCGGTTCATGACTTGCTGATTAAAATGCAGCGCGAGCGCATTCATATGGC 953
||.|||||..|..|||||||.|||||||||||.||.||.|||||.|||||
BL02882___yhd 904 CCTGTTCAAAAGCTGCTGATCAAAATGCAGCGGGAACGGATTCACATGGC 953
BSNT_01646___ 954 TATATTGTCGGATGAATACGGAGGAACCTCGGGACTTGTGACGACAGAGG 1003
.||.||..|||||||.||||||||.||.|||||.|||||||||.|.||||
BL02882___yhd 954 GATCTTAACGGATGAGTACGGAGGGACATCGGGTCTTGTGACGGCCGAGG 1003
BSNT_01646___ 1004 ATATTCTTGAGGAAATTGTCGGAGAGATCAGAGATGAATTTGATGAAGAT 1053
||||||||||.|||||.|||||.||||||||.||.|||||.||||||||.
BL02882___yhd 1004 ATATTCTTGAAGAAATCGTCGGGGAGATCAGGGACGAATTCGATGAAGAC 1053
BSNT_01646___ 1054 GAACAGCCGCTGATCCAAAAGCTTGGCGACGGCCATTATGTGATGGATGG 1103
|||.|.|||||.|||.||||..||..|||...|.|.||..|.||||||||
BL02882___yhd 1054 GAAAAACCGCTCATCGAAAAAGTTTCCGATCACGAATACATCATGGATGG 1103
BSNT_01646___ 1104 AAAGGTTCGGATCGATCAGGTGAA-CAGCCTTCTT----GGCG-CATCGA 1147
|||.||..|.|||||||||||.|| .||| |.|| |.|| .|||||
BL02882___yhd 1104 AAAAGTGAGAATCGATCAGGTCAATGAGC--TGTTTGAAGACGATATCGA 1151
BSNT_01646___ 1148 TTCAAGAAGACGTCGATACGATCGGCGGGCTGATATTAAAAGAAAACATC 1197
..||||.||.|||||.||..|||||||.||..|..|.|||||||||||.
BL02882___yhd 1152 -GGAAGAGGAAGTCGAAACTGTCGGCGGACTTGTGCTGAAAGAAAACATA 1200
BSNT_01646___ 1198 GATATTG---------AGGCTGGTGAATCCATTCGCATCGGTTCATATAC 1238
|||||.| |||| ||||.|| |||||.||.||.||
BL02882___yhd 1201 GATATCGCGGAAGGCCAGGC-GGTGCAT--------ATCGGCTCTTACAC 1241
BSNT_01646___ 1239 GATAAAGGTGCT-GAAGATGGACGGCCGATTAATCAAGCAAATCGATATA 1287
|||||.|||.|| ||| |||||.||.||..|.||.|||||..|||| |..
BL02882___yhd 1242 GATAACGGTTCTCGAA-ATGGAAGGGCGTCTGATTAAGCACGTCGA-AGT 1289
BSNT_01646___ 1288 AAAGAAGAAGCCAGCAACACAACCGGGAT-TACGGCGCACCACAAGCTGC 1336
.|||..|.|.|.|.|||||.||| || || .|||||.
BL02882___yhd 1290 CAAGCGGGAACAAACAACAGAAC----ATGTA-----------GAGCTGG 1324
BSNT_01646___ 1337 CGCTGCCTGAGCCTGTGATGCTGAACAGTGCA---ACCTTGAGCGAGAAA 1383
|.|.|.|..|.||.||..|..|.||| |.| |||||||||||.|||
BL02882___yhd 1325 CACCGGCAAATCCGGTCGTCGTAAAC---GAAATCACCTTGAGCGAAAAA 1371
BSNT_01646___ 1384 TAA 1386
||.
BL02882___yhd 1372 TAG 1374
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