Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00394 and BL02881
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_00394.1.5803.seq
# -bsequence dna-align/BL02881.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00394-BL02881.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00394-BL02881.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00394
# 2: BL02881
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 486
# Identity: 253/486 (52.1%)
# Similarity: 253/486 (52.1%)
# Gaps: 138/486 (28.4%)
# Score: 538.5
#
#
#=======================================
BSNT_00394 1 ---------------ATGTATACACTTC--AAGAAATTAGTAAACCTAAA 33
|| ||.||| |.| ||.
BL02881 1 TTGCTGTGGTACGAGAT-----CATTTCGGAGG--------------AAG 31
BSNT_00394 34 AGAAAAAAACTAGTGAAAAATATTGAGAAG---------CACTTAAAGAA 74
|||.|||||| || |||||.||..| ||.||.|.|||
BL02881 32 AGAGAAAAAC--GT-----ATATTAAGCGGATCGAATTTCATTTGAGGAA 74
BSNT_00394 75 CTACAATAATTACAAAGTTGCCATCCTTAATCTAAGTAAACAGCTTGAAT 124
.|..||.||||||||||..|||.|.||.||| |.||.||..| ||||
BL02881 75 TTGGAAAAATTACAAAGCCGCCGTGCTCAAT-TTAGAAAGGA----GAAT 119
BSNT_00394 125 TCA-TAGCTACAAATGATAATATGGAAATCT-----TTAAAGAAAGCATC 168
..| .||...||||.|| |||| .|| |.||||||||.|.|
BL02881 120 GGAGAAGGAGCAAAAGA----ATGG---GCTCGCCGTCAAAGAAAGAAAC 162
BSNT_00394 169 GATGATGACTGTGAGTTTCAGGA-ATCGGTGGATAAACTTGCCGGTGAGT 217
|.||| | ||| ||||..|| ||||
BL02881 163 GCTGA-----------------ATATC---GGATCGAC--GCCG------ 184
BSNT_00394 218 TGCAACA-------TATCAAACTT--CTAAAAGATTCAATCGATA----T 254
||.| ||||||..|| || .|||||.||.||.| |
BL02881 185 ---AAAAAAGGCTCTATCAATTTTTGCT---TGATTCGATGGAAACGGCT 228
BSNT_00394 255 TTCATTATCAGAATTAACAGAACTAGAGTACAGA--TTTGTTCAATACCG 302
.|| ||.|||||....|||||.||| |.|| .|.||..|||.|||
BL02881 229 GTC----TCCGAATTGGATGAACTCGAG--CGGAAGCTGGTAGAATGCCG 272
BSNT_00394 303 TTATTTTAAAAATTGGACCATTGAAAAAAGTGCACTAGAGATCGGTTATA 352
.|||.||.|.||.||||.|||.|..|||.|.||..|.||.|||||.||.|
BL02881 273 GTATATTCATAACTGGAGCATGGGCAAATGCGCGATGGAAATCGGCTACA 322
BSNT_00394 353 GTGATAAAGCACTGTTTGTAAT-ACGTAATCAGGTAATGGATAA-ATTAT 400
|.||.|||.|.||||||.|||| |...|||| |.|..||||.|| .|..|
BL02881 323 GCGAAAAAACGCTGTTTTTAATGAAAAAATC-GCTGCTGGACAAGCTGCT 371
BSNT_00394 401 TGATCAGCTTAGGGAGCGTTGTTTAC----ATGTAA 432
|| ||||||| .|||..|.|.|| ||.|||
BL02881 372 TG-TCAGCTT----GGCGGCGATCACGAATATTTAA 402
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