Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01653 and BL02877
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_01653___yhdY.1.5803.seq
# -bsequence dna-align/BL02877___yhdY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01653___yhdY-BL02877___yhdY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01653___yhdY-BL02877___yhdY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01653___yhdY
# 2: BL02877___yhdY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1201
# Identity: 750/1201 (62.4%)
# Similarity: 750/1201 (62.4%)
# Gaps: 209/1201 (17.4%)
# Score: 2169.5
#
#
#=======================================
BSNT_01653___ 1 ATGCCGGATTATCTGC-AGCAGTATTTTACGCTTGATAACATCATAC--- 46
||.|.| |..|||||.|.||..|.||| |.|
BL02877___yhd 1 ----------ATGTTCGAAAAGTATATGACAATGGAT-------TTCGCT 33
BSNT_01653___ 47 ----AAATCGGCATCAGCTTGGCGATTTTGCTGGTGTTTCTTATAC---- 88
|.|||||.||||||.|.|..||..|.|| |||.||.|.|
BL02877___yhd 34 GCCGATATCGGGATCAGCATCGGTATCCTTCT----TTTATTTTTCGCGT 79
BSNT_01653___ 89 TGAGAAAATTATTCAC-AAGATATTTCTTTAACTTGCTTTTTAATTTGAC 137
|.||||||.||||.|| ||| ||.||.||.|||.||.|..|.||.|||||
BL02877___yhd 80 TTAGAAAAATATTTACGAAG-TACTTATTCAACCTGATACTGAAATTGAC 128
BSNT_01653___ 138 AAACCGGCCGAAAACAGAAATTTTTAAACAGGTGGTTCTGGCGTTTGATA 187
.||...|.|||||||.||..||||.||.||||||||.|||||||||||.|
BL02877___yhd 129 GAATAAGACGAAAACGGACTTTTTCAATCAGGTGGTGCTGGCGTTTGAAA 178
BSNT_01653___ 188 AGCCGGCCAGATGGTTTTTTGTTGCC----CTTGGGCTGTTTTTA----G 229
||||||||||.|||||||||| | || |.||.|||| |
BL02877___yhd 179 AGCCGGCCAGGTGGTTTTTTG----CGATACT----CGGTATTTATCTGG 220
BSNT_01653___ 230 CGATCCGGTATTCACCGTTTTTAGATGAGCAAAT----ACCGGTCATCAG 275
||||....|||||.||||||||.||.|.|||.|| |.||.||||
BL02877___yhd 221 CGATTATTTATTCCCCGTTTTTTGAGGGGCATATGGGGATCGTTCAT--- 267
BSNT_01653___ 276 CAAAATATACCG---CTCACTGATTGTGGCGCTC-TTGT--GCTGGGGTC 319
|||.|.|||.| .||..|||||.||| || |||| || ||.|
BL02877___yhd 268 -AAACTGTACAGAGTGTCCGTGATTTTGG---TCATTGTAAGC---GGCC 310
BSNT_01653___ 320 TTTGTAATTTGACCGCAACATCGTC-GTTTATCTTCCATAAGGTGAATCA 368
|.|.|||.||.||.||..|.||||| |||| |.|||.||||..|.|||.|
BL02877___yhd 311 TGTATAACTTAACGGCGGCTTCGTCTGTTT-TATTCGATAAAATCAATAA 359
BSNT_01653___ 369 GC-GCTTCGAGCTTGACATGGATGACATTCTGGCCCCGTTTTTATCCAA- 416
|| |||| ||||||||.||||||||.|||||.||.||||||||.|||||
BL02877___yhd 360 GCGGCTT-GAGCTTGATATGGATGATATTCTTGCGCCGTTTTTGTCCAAG 408
BSNT_01653___ 417 ATTGCTCCGTTTTGTGATCATT---GCGCTCAGTGTCAGTGTGATCGCTC 463
||| |||||.||| |||||| |||||..|..||||.||.||||| |
BL02877___yhd 409 ATT-CTCCGATTT---ATCATTGTAGCGCTTGGAATCAGCGTCATCGC-C 453
BSNT_01653___ 464 AG-GAATTCAATTATGATGTCAACGGATTTGTAGCGGGCCTTGGTCTTGG 512
.| ||.||||||||||||||||||||||||||.||.||.||.||.||.||
BL02877___yhd 454 GGAGAGTTCAATTATGATGTCAACGGATTTGTTGCCGGACTCGGGCTCGG 503
BSNT_01653___ 513 CGGACTGGCTTTTGCGCTTGCCGCGAAGGATACCATCAGCAACTTCTTTG 562
||||.|.||||||||.|||||.||.||.||.||..||.|.|||||.||.|
BL02877___yhd 504 CGGATTCGCTTTTGCCCTTGCGGCAAAAGACACAGTCGGAAACTTTTTCG 553
BSNT_01653___ 563 GCGGTATTATCATTATTACTGAAAAGCCGTTTACAATTGGTGACTGGGTG 612
||||..||.|||||||||..||.|||||.||||||||.||.||.|||.|.
BL02877___yhd 554 GCGGAGTTGTCATTATTATGGAGAAGCCTTTTACAATCGGCGATTGGATT 603
BSNT_01653___ 613 GAGACGTCGACAGTAACAGGATCAGTCGAGGATATTACCTTTAGGAGCAC 662
||.|||...|..||.||||||.|.||.||.|||||..|.||.||.|||||
BL02877___yhd 604 GAAACGAAAATTGTCACAGGAACTGTTGAAGATATATCGTTCAGAAGCAC 653
BSNT_01653___ 663 GAGATTCAGAACAGCACAG-GGGGCGCTTGTAACGGTCCCGAACTCTACG 711
||.|.||.|.||.|| |.| |.|||.||.||.||.||.||.||||||..|
BL02877___yhd 654 GAAAGTCCGCACGGC-CGGAGAGGCTCTCGTTACCGTTCCCAACTCTGTG 702
BSNT_01653___ 712 CTGTCGATGGAAGCGATCACGAACTGGACAAGAATGACTAAA-CGCCAGA 760
|||.|.|..||||||||||.|||||||||.|.|||| |.||| ||.|||.
BL02877___yhd 703 CTGGCCAACGAAGCGATCATGAACTGGACGAAAATG-CGAAAGCGTCAGG 751
BSNT_01653___ 761 TTACGTTT----------TCCATCCATGTGTCCTACGCTACGCCGATTGA 800
|.||.||| ||.||||.| |.||.|||...||
BL02877___yhd 752 TCACCTTTACGCTCGAAATCGATCCGT----------CAACCCCGCGGGA 791
BSNT_01653___ 801 GAACCTTGAACGCT--------CCATTCATTCTCTCAGAACAATGCTCTT 842
|||..|.||.||.| |..||.| .||| |||||||..
BL02877___yhd 792 GAAAGTCGAGCGGTGTGTGGAGCGTTTTA------AAGA--AATGCTCGA 833
BSNT_01653___ 843 AGAGCATGAGGGCGTTGATAATGAAAC--------AATCATGGTCAACTT 884
|..|||.||.||.|| .||| .||.||||||||.||
BL02877___yhd 834 ATCGCACGAAGGGGT--------CAACCCGGATGTCATTATGGTCAATTT 875
BSNT_01653___ 885 TGATACGTTTGCC-GACAGCTACTACAATTTA------TTTTTTAACTTC 927
.||| || || ||..|.||| ..||||| ||.||.||||.|
BL02877___yhd 876 CGAT--GT---CCTGAAGGATAC--GCATTTAAGCATCTTCTTCAACTAC 918
BSNT_01653___ 928 TATACAAAAACGACAGTTTGGGCTGAAAACCTTAATATTAGAGAGGATAT 977
||||||||.|||||.||.|||||.||||||.|..|..|.|||.|||||.|
BL02877___yhd 919 TATACAAATACGACGGTCTGGGCCGAAAACTTGGACGTCAGACAGGATGT 968
BSNT_01653___ 978 CAACTATAAAATTATTGAGATTTT-----AGGTGCAGAAGGTGTCCAGTT 1022
.|||||....|||.||||.|||.| |||.|||| ||..|.||
BL02877___yhd 969 GAACTACCGCATTCTTGACATTATGAAAGAGGAGCAG-----GTTGATTT 1013
BSNT_01653___ 1023 TGCATATCCCGGCCAAA---TGGTT--GTTGTCAAGCAAAAGCACGAAAG 1067
||..|.|||.||.||.| |..|| |||| |||.|| |.|||||
BL02877___yhd 1014 TGTTTCTCCGGGGCACAGCCTCTTTGAGTTG--AAGAAA----ATGAAAG 1057
BSNT_01653___ 1068 CGACCCATTCCAGGTGAATCTAAATAAAG--AGGAAAAGGAACGGGCTTA 1115
||| || |||||| .|||||
BL02877___yhd 1058 -----------------ATC-------AGCAAGGAAA-------TGCTTA 1076
BSNT_01653___ 1116 A 1116
.
BL02877___yhd 1077 G 1077
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