Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01664 and BL02873
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_01664___yheI.1.5803.seq
# -bsequence dna-align/BL02873___yheI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01664___yheI-BL02873___yheI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01664___yheI-BL02873___yheI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01664___yheI
# 2: BL02873___yheI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1811
# Identity: 1304/1811 (72.0%)
# Similarity: 1304/1811 (72.0%)
# Gaps: 109/1811 ( 6.0%)
# Score: 4436.5
#
#
#=======================================
BSNT_01664___ 1 ATGTTTTCAGTTTTGAAAAAGCTTGGCTGGTTTTTTAAGGCGTACTGGCT 50
||||||||.|||||....|||||.||||||||||||||.||.|..||||.
BL02873___yhe 1 ATGTTTTCTGTTTTATGGAAGCTGGGCTGGTTTTTTAAAGCCTCATGGCG 50
BSNT_01664___ 51 GCGCTATACGATTGCGATTGTCCT-TTTATTAGCAGTCAATGTCATT-GA 98
||||||.|||||.|||.|.||||| ||.|||| ..||.||.|| ||| ||
BL02873___yhe 51 GCGCTACACGATAGCGGTCGTCCTATTGATTA-TTGTAAACGT-ATTGGA 98
BSNT_01664___ 99 AATGTTTCCGCCTAAGCT-CTTGGGGAACGCCATAGATGATATGAAAGCA 147
||||||||||||.||||| ||| ||.|||||.||.||.||||||.|.||
BL02873___yhe 99 AATGTTTCCGCCGAAGCTGCTT-GGCAACGCGATTGACGATATGCAGGC- 146
BSNT_01664___ 148 GGGGCATTTACTGCGGAAGGGC----TGCTGTTTTATATCGGTATCTTTT 193
|||||.||..|.| ||||.| ||||....|||||||||.|.|||.
BL02873___yhe 147 -GGGCACTTTTTCC--AAGGCCGGCATGCTCGGCTATATCGGTTTATTTC 193
BSNT_01664___ 194 TTGTGCTGACGGCG--GCCGTGTATATCATGTCTTATTTTTGGATGCATC 241
|||.||| .|||| |..||.||||.|.||||.||||.|||||||.|||
BL02873___yhe 194 TTGCGCT--TGGCGCAGTTGTTTATACCCTGTCCTATTATTGGATGTATC 241
BSNT_01664___ 242 AGCTGTTTGGCGGAGCGAATCTGATGGAGAAAATTCTTCGTACGAAGCTG 291
||||||||||.||||||||.|||.|.||.||||||||..|..|.||||||
BL02873___yhe 242 AGCTGTTTGGGGGAGCGAACCTGGTCGAAAAAATTCTCAGATCCAAGCTG 291
BSNT_01664___ 292 ATGGGGCATTTGCTGACTATGTCGCCGCCGTTTTATGAAAAAAACCGAAC 341
|||||.||||||||||..|||.|||||.|.|||||.||.||.|||||.||
BL02873___yhe 292 ATGGGCCATTTGCTGAAAATGACGCCGTCTTTTTACGAGAAGAACCGCAC 341
BSNT_01664___ 342 AGGCGATTTAATGGCACGAGG--GACAAATGATCTTCAGGCCGTCAGTTT 389
|||.|||||.|||| ||||| ||||||||||.|..|.| ||.|||
BL02873___yhe 342 AGGGGATTTGATGG--CGAGGGCGACAAATGATTTAAAAG----CAATTT 385
BSNT_01664___ 390 AACCA------CAGGGTTTGGCATCTTGACGTTAGTTGATTCTACGATGT 433
||| |.||.||.|||||.|||||..|.||.|||||.|||||||
BL02873___yhe 386 --CCATGACGGCGGGCTTCGGCATTTTGACACTGGTCGATTCGACGATGT 433
BSNT_01664___ 434 TTATGATGACGATCTTTTTGACAATGGGGTTTTTGATCAGCTGGAAGCTG 483
.||||.||||||||.||||.||.|||||.|||||||||||||||||.|||
BL02873___yhe 434 ATATGCTGACGATCCTTTTAACGATGGGTTTTTTGATCAGCTGGAAACTG 483
BSNT_01664___ 484 ACCTTTGCCGCCATTATCCCGCTTCCAGTCATGGCGATTGCAATCAGTCT 533
||..||||..|.||.||.||||||||..|.|||||....||.|||||..|
BL02873___yhe 484 ACGCTTGCTTCGATCATTCCGCTTCCGCTGATGGCCGCCGCCATCAGCAT 533
BSNT_01664___ 534 ATATGGAAGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCG 583
.||.||.|..||||||||||||||.||.||.||.||.||..|.|||||.|
BL02873___yhe 534 CTACGGGAAAAAAATTCATGAGCGTTTCACGGAAGCGCAGGATGCGTTTG 583
BSNT_01664___ 584 GGGCGCTGAATGA-CAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGAT 632
|.||..|.||||| || ||||||.||.||.||.|||||.||..|||||||
BL02873___yhe 584 GCGCTTTAAATGATCA-AGTGCTCGAGTCCGTGTCAGGGGTAAGGGTGAT 632
BSNT_01664___ 633 TCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGA 682
.||.||.|||||.|||||.|.|||.|||||..|||||||.||....||||
BL02873___yhe 633 CCGGGCCTATGTACAGGAGAAAAATGATGTCAGCCGGTTCAACAGCATGA 682
BSNT_01664___ 683 CCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTG 732
|.||||||||.||..||||||||||||||||.|||||.||.|||||.|||
BL02873___yhe 683 CGGCTGATGTGTACAAGAAAAATATGAAAGTCGCTTTGATCGATTCGCTG 732
BSNT_01664___ 733 TTTGAGCCGACGGTGAAACTGCTTGTCGGCGCAAGCTATCTGATTGGGCT 782
|||||.|||||||||||.||..|.|||||....||||||.|.||.||.||
BL02873___yhe 733 TTTGAACCGACGGTGAAGCTTTTGGTCGGGATCAGCTATTTAATCGGTCT 782
BSNT_01664___ 783 CGGCTACGGAGCGTTTCTTGTATTCCGGAACGAGCTGACGCTTGGAGAGT 832
.||||||||.||.|.||||||.|||||.|.|.|||||||..|.||.||..
BL02873___yhe 783 TGGCTACGGCGCCTATCTTGTTTTCCGCAGCCAGCTGACATTGGGTGAAC 832
BSNT_01664___ 833 TAGTGTCCTTTAACGTTTATCTCGGCATGATGATTTGGCCGATGTTTGCA 882
|.||.||.||.|||||.||.|||||||||.||||.||||||||||||||.
BL02873___yhe 833 TCGTCTCTTTCAACGTGTACCTCGGCATGCTGATCTGGCCGATGTTTGCG 882
BSNT_01664___ 883 ATCGGTGAACTCATTAACGTGATGCAGCGCGGCAATGCGTCATTAGACCG 932
|||||.||.||.||.||.||.||||||.|.||.|||||.||..|.|||.|
BL02873___yhe 883 ATCGGAGAGCTGATCAATGTCATGCAGAGGGGAAATGCTTCGCTTGACAG 932
BSNT_01664___ 933 GGTAAATGAAACTCTTTCTTATGAAACGGATGTGACAGATCCAAAACAGC 982
||||||||||||..|..|.|||||..|.|||||||.|| |||
BL02873___yhe 933 GGTAAATGAAACATTGGCATATGAGCCTGATGTGAGAG---------AGC 973
BSNT_01664___ 983 CCGCTGATCTTAAA------GAGCCTGGAGATATCGT-TTTCA---GTCA 1022
|||||||.|...|| |||||.||.|||||.|| |||.| |
BL02873___yhe 974 CCGCTGAACCCGAAGCAGCGGAGCCGGGCGATATTGTGTTTGACGGG--- 1020
BSNT_01664___ 1023 TGTCAGCTTTACATATCCAAGCTCAACAAGT--GACAATCTTCAGGATAT 1070
||||..|||||.|||||.|||||..| || ||.||.||....|||||
BL02873___yhe 1021 -GTCACTTTTACGTATCCGAGCTCTGC--GTCGGAAAACCTGGCCGATAT 1067
BSNT_01664___ 1071 TTCATTTACGGTGCGAAAAGGGCAGACTGTCGGGATTGCAGGTAAAACCG 1120
|||||||||.||...|.||||.|||||.|||||.||.|..||.||.||.|
BL02873___yhe 1068 TTCATTTACCGTATTAGAAGGACAGACGGTCGGAATCGTCGGAAAGACGG 1117
BSNT_01664___ 1121 GGAGCGGAAAAACGACAATTA-TTAAGCAGCTTTTGCGCCAGTATCCTCT 1169
|||||||.|||||||| |||| |.||||||||..||.|.||||||||.|.
BL02873___yhe 1118 GGAGCGGCAAAACGAC-ATTAGTCAAGCAGCTGCTGAGGCAGTATCCGCA 1166
BSNT_01664___ 1170 AGGTGAAGGGAGCATTACATTTTCAGGTGTACCGATTCAGCAAATCCCTC 1219
|||..||||.|..||.||..||||.||.||.||.|||.|.|...|.||.|
BL02873___yhe 1167 AGGAAAAGGAACGATCACCATTTCGGGCGTGCCCATTGAACGTCTGCCGC 1216
BSNT_01664___ 1220 TTGACCGTCTCCGCGGATGGATCGGATATGTGCCTCAGGATCATTTACTG 1269
||||.|..||||||.|.||||||||.||||||||.|||||.||..|.|||
BL02873___yhe 1217 TTGATCAGCTCCGCAGCTGGATCGGGTATGTGCCACAGGACCACGTGCTG 1266
BSNT_01664___ 1270 TTTTCACGGACTGTAAAAGAAAATATTTTATACGGAAAACAGGATGCAAC 1319
||||||....|.||.|||||.||||||||.|.||| .||| ||.|
BL02873___yhe 1267 TTTTCAAAATCAGTGAAAGACAATATTTTGTTCGG-----CGGA--CACC 1309
BSNT_01664___ 1320 T-GATAAAGA----GGTTCAGCAAGC---CATTGCCGAAGCACATTTTGA 1361
| |.|.|||| |.|| .|||.|| |||..|.|.|||||| |.|||
BL02873___yhe 1310 TCGCTGAAGAACGCGATT-TGCACGCCGTCATCTCTGCAGCACA-TCTGA 1357
BSNT_01664___ 1362 AAAA-GAT-TTGCACATGCTTCCGTCCGGTCTGGAGACAATGGTCGGTGA 1409
|||| ||| ||| |.||||||.|...|||..||||||||||||||||.||
BL02873___yhe 1358 AAAAGGATATTG-AGATGCTTTCAGACGGCTTGGAGACAATGGTCGGAGA 1406
BSNT_01664___ 1410 AAAAGGCGTGGCACTGTCAGGCGGACAGAAACAAAGAATTTCGATTGCGA 1459
.||.||.||.||..|.||.||.||.||||||||..|.|||||.|||||||
BL02873___yhe 1407 GAAGGGAGTCGCTTTATCCGGGGGGCAGAAACAGCGGATTTCAATTGCGA 1456
BSNT_01664___ 1460 GAGCACTCATGGCGAATCCGGAAATCTTGATTCTGGATGATTCACTTTCC 1509
||||..|.||.|||.|.||..|.||.||.|||.||||||||||.||.|||
BL02873___yhe 1457 GAGCGATGATTGCGGAGCCCCATATTTTAATTTTGGATGATTCGCTGTCC 1506
BSNT_01664___ 1510 GCTGTAGATGCCAAAACAGAGGCTGCAATTATCAAGAACATCAG-AGAAA 1558
|||||.||.||.|||||.||.||.||.|||||..|.||||||.| ||.|.
BL02873___yhe 1507 GCTGTCGACGCGAAAACGGAAGCGGCGATTATTGAAAACATCCGCAGCAG 1556
BSNT_01664___ 1559 ACCGCAAAGGAAAAACGACATTTATTTTGACGCACCGATTATCCGCGGTT 1608
| ||.|||||.||||||||.||||||....|.|||||..|.||.||.||.
BL02873___yhe 1557 A-CGGAAAGGCAAAACGACGTTTATTACATCACACCGGATGTCGGCTGTC 1605
BSNT_01664___ 1609 GAGCACGCTGACCTGATCCTTGT-------GATGGACGGCGGCGTCATTG 1651
||.|||||.||..|.||.||.|| ||||||.|| ||.|
BL02873___yhe 1606 GAACACGCCGATTTCATTCTCGTCATGGAGGATGGAAGG-------ATCG 1648
BSNT_01664___ 1652 TTGAGAGAGGCACGCATCAAGAACTGCT-GGCCAATAATGGGTGGTACCG 1700
||||||||||.|||||||||||||||.| |||| ..||.||.|||||...
BL02873___yhe 1649 TTGAGAGAGGGACGCATCAAGAACTGATCGGCC-GGAAAGGCTGGTATTT 1697
BSNT_01664___ 1701 GGAACAATATGAAAGACAGCAGCTGTTCACTGCG---GAAGAAGGGGGAG 1747
.||||||||||||..|||||||| ||| ||.|| |||||||||||..
BL02873___yhe 1698 TGAACAATATGAAGCACAGCAGC--TTC-CTTCGGGAGAAGAAGGGGGCA 1744
BSNT_01664___ 1748 CAGGGGCATGA 1758
|.|..||||||
BL02873___yhe 1745 CTGTAGCATGA 1755
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