Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01665 and BL02872
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_01665___yheH.1.5803.seq
# -bsequence dna-align/BL02872___yheH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01665___yheH-BL02872___yheH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01665___yheH-BL02872___yheH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01665___yheH
# 2: BL02872___yheH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2143
# Identity: 1438/2143 (67.1%)
# Similarity: 1438/2143 (67.1%)
# Gaps: 245/2143 (11.4%)
# Score: 4581.5
#
#
#=======================================
BSNT_01665___ 1 ATGAAAATAGGAAAAACG-TTATGGAGATACGCACTTCTTTATCGAAAAT 49
||||.||.||||||||.| ||.|..| |||.||.|||||||||..||||.
BL02872___yhe 1 ATGACAACAGGAAAAAGGCTTTTCCA-ATATGCGCTTCTTTATAAAAAAA 49
BSNT_01665___ 50 TGCTGATCACAGCCGTCCTTTTGCTAACTGTTGCCGTCGGTGCAGAACTG 99
|.||.|||...||..||.|..||||.||..|.||||||...||.||.|||
BL02872___yhe 50 TTCTCATCTGGGCGCTCGTCATGCTGACGATCGCCGTCACAGCCGAGCTG 99
BSNT_01665___ 100 ACTGGGCCCTTTATTGGCAAAAAAATGATAGACGACCATATCCTCGGCAT 149
||||||||..|.||.|.||||||.|||||.|||||.|||||.|||||.||
BL02872___yhe 100 ACTGGGCCGATGATCGCCAAAAAGATGATCGACGATCATATTCTCGGAAT 149
BSNT_01665___ 150 TGAGAAAACATGGTATGAAGCTGCGGAAAAAGA--TAAAAATGCCGTTCA 197
|||.|||||.|||||||||.| ||.|.||| |..|||| .|.|.
BL02872___yhe 150 TGAAAAAACGTGGTATGAAAC----GACAGAGAACTCGAAAT---ATACT 192
BSNT_01665___ 198 GTTTC----------ACGGCGTCTCATATGTC-----AGAGAGGACCGA- 231
||||| |.|| .||||.|| |||.|||||.||
BL02872___yhe 193 GTTTCCTACAAAGGAAAGG-----AATATATCAGGGAAGACAGGACAGAC 237
BSNT_01665___ 232 --TTGCAGGAGCCTGTTTCAAAAGC-AAAAGAAGCGCATATTTATCAAGT 278
|| ||| ||| |||||| ..|.||||..||.||.|.||||||
BL02872___yhe 238 CCTT-CAG----CTG----AAAAGCTGCAGGAAGTTCACATCTTTCAAGT 278
BSNT_01665___ 279 GGGAATGGCGTTCTATTTTGTTG---ATCAGGCTGTCAGCTTCGACGGGA 325
.||.|||...|.|||.|||||.| |.|.|| |.|| |||.||||||.
BL02872___yhe 279 CGGTATGAACTACTACTTTGTGGGGAAACCGG-TTTC--CTTTGACGGGG 325
BSNT_01665___ 326 ATAGAACGGTTTCTGACGGGA-AGCTGACGATCACAAAAGGAGACAAGAG 374
|..|.||||||||.| .|||| ||||||..||.||.|..||||||..||
BL02872___yhe 326 AGCGGACGGTTTCCG-GGGGAGAGCTGAGAATGACGAGCGGAGACCGGA- 373
BSNT_01665___ 375 CCGGGCATATGCTGCCGAAAAG---------CTGACTAAGCAGGAA---- 411
|||..| ||.|.||| |||.||..|...|||
BL02872___yhe 374 -CGGAAA-------CCTACAAGGCCGATCGCCTGTCTTTGTCTGAAGTGT 415
BSNT_01665___ 412 ---CTTTTCCAGTTCTATCAGCCGGAAATA-AAGGGAATGGTGTTACTGA 457
||||| ||..||||.|||||| .|||| ||||
BL02872___yhe 416 ATGCTTTT-------TACGAGCCTGAAATAGGAGGG----------CTGA 448
BSNT_01665___ 458 TCTGCC---------TGTATGGGGGCTTGCTTGTGTTTTCGGTATTCTTT 498
|||..| |.|||...|||.|.||..|.||.|||.|.||.||.
BL02872___yhe 449 TCTCGCTCGTTTCTATTTATTTCGGCCTTCTCATTTTCTCGATCTTTTTC 498
BSNT_01665___ 499 CAATACGGACAGCAT--TATCTGCTGCAGATGAGCGCCAATCGGATTATT 546
||.|||||.|| || ||.||..|||||||||||||.||.||.||.|||
BL02872___yhe 499 CATTACGGCCA--ATTCTACCTCTTGCAGATGAGCGCAAACCGCATCATT 546
BSNT_01665___ 547 CAAAAGATGAGGCAGGACGTGTTTTCGC--ACATACAGAGTATGCCGATT 594
|||||||||||.||||| |||.||||| ||||.||.||..|.||.||.
BL02872___yhe 547 CAAAAGATGAGACAGGA--TGTATTCGCCAACATTCAAAGGCTTCCTATC 594
BSNT_01665___ 595 CGCTATTTTGACAACCTTCCGGCCGGAAAAGTCGTTGCGCGGATTACCAA 644
|||||||||||.||..|.|||||.||||||.|||||||..||.|.||.||
BL02872___yhe 595 CGCTATTTTGATAATTTGCCGGCAGGAAAAATCGTTGCAAGGGTAACGAA 644
BSNT_01665___ 645 TGATACGGAGGCTATCAGGGATTTATATGTCACAGTGCTTTCAACATTTG 694
||||||.||.||.|||.|.|||.|.|||||.||.||.|||||.||.||||
BL02872___yhe 645 TGATACCGAAGCGATCCGCGATCTGTATGTGACCGTTCTTTCGACGTTTG 694
BSNT_01665___ 695 TGACAAGCGGA----ATCTATATGTTCGGGATATTCACGGCTTTGTTTCT 740
|.|||| | ||.||||||..|||.||||||.|.||..|||||.|
BL02872___yhe 695 TTACAA----ATATCATTTATATGGCCGGAATATTCGCCGCACTGTTTTT 740
BSNT_01665___ 741 GCTTGATGTGAAGCT----TGCGTTTGTATGTCTGGCAATTGTGCC---G 783
.||||||||.|.||| .||||.|||.||| || |||||||| |
BL02872___yhe 741 CCTTGATGTCAGGCTGGCCGGCGTCTGTCTGT-TG---ATTGTGCCCCTG 786
BSNT_01665___ 784 ATTATC----TGGCTGTGGTCTGTCATATACCGGAGATATGCGTCATATT 829
|||.|| .||||| ||| |.||.||.|.||..||.|||...|
BL02872___yhe 787 ATTGTCATTTGGGCTG----CTG---TTTATCGAAAATTCGCTTCAGGCT 829
BSNT_01665___ 830 ACAACCAAAAAATCCGCTCGATCAACAGTGACATTAACGCAAAAATGAAT 879
||||.||.|||.|..|.||.||||||||.||.||.|||||.|||||||||
BL02872___yhe 830 ACAATCATAAACTTAGGTCAATCAACAGCGAGATCAACGCCAAAATGAAT 879
BSNT_01665___ 880 GAGTCAATTCAAGGCATGACCATTATTCAGGCTTTCCGCCATCAAAAGGA 929
||.||.||||||||||||||.|||||||||||.|||||.|....|.||||
BL02872___yhe 880 GAATCGATTCAAGGCATGACGATTATTCAGGCATTCCGGCGCGGACAGGA 929
BSNT_01665___ 930 AACAATGAG-AGAATTTGAGGAATTAAATGAATCA--CATTTTTATTTCC 976
.|||| .|| |||||||||..|..|.||||| || ||.|||.|||.||
BL02872___yhe 930 CACAA-AAGAAGAATTTGAACAGCTGAATGA--CAGCCACTTTCATTACC 976
BSNT_01665___ 977 AAAACAGGATGCTGAATTTAAACTC-CTTAATGTCCCATAATTTGGTCAA 1025
||||.|..||||||||.|||||||| ||| ||||||||.||.||||||||
BL02872___yhe 977 AAAATAAAATGCTGAAATTAAACTCGCTT-ATGTCCCACAACTTGGTCAA 1025
BSNT_01665___ 1026 TGTCATCC---GCAATCTTGCGTTCGTCTGTCTGATCTGGCATTTTGGCG 1072
|||.| |.|||.|...||||..|..|||.||.|||.||||.||.|
BL02872___yhe 1026 ---CATTCTGAGAAATGTGATGTTCACCGCTCTAATATGGTATTTCGGGG 1072
BSNT_01665___ 1073 GTGCGAGCCTGAATGCGGCCGGGATTGTTTCTATCGGTGTGCTGTACGCG 1122
|.||...||||||.||||..||.||..||||.|||||.||.||.||.||.
BL02872___yhe 1073 GAGCTGCCCTGAACGCGGAAGGAATGATTTCAATCGGCGTACTCTATGCA 1122
BSNT_01665___ 1123 TTTGTCGATTATTTGAACCGGTTATTTCAGCCGATCACAGGCATCGTCAA 1172
||.||||||||.|||||.||.||||||||||||||.||.|||||||||||
BL02872___yhe 1123 TTCGTCGATTACTTGAATCGTTTATTTCAGCCGATTACGGGCATCGTCAA 1172
BSNT_01665___ 1173 TCAGTTTTCAAAGCTGGAGCTTGCAAGGGTCTCCGCCGGGCGTGTTTTTG 1222
.||||||.|.|||||.||..|.||..|.||.||..|.|.|||.|||||..
BL02872___yhe 1173 CCAGTTTGCCAAGCTTGAATTGGCGCGCGTATCATCGGAGCGGGTTTTCC 1222
BSNT_01665___ 1223 AACTGCTTGAAGAAAAGAATACGGAAGAACCGGG------------TGAA 1260
..||||| |||.||.||||| .||.
BL02872___yhe 1223 GCCTGCT---------------GGATGAGCCGGGCGTCGATGTCAAAGAG 1257
BSNT_01665___ 1261 CCG----GCGAAGGAGCGCGCGCTGGGGCGGGTTGAATTTCGTGATGTGT 1306
||| |||||.||||||| ||||||.||.|..|||...|||||.|
BL02872___yhe 1258 CCGAGCAGCGAAAGAGCGCG----GGGGCGAGTCGTGTTTGAGGATGTAT 1303
BSNT_01665___ 1307 CATTTGCG-TATCAAGAAGGTGAAGAGGTATT--AAAGCGTATTTCCTTT 1353
||||| || |||||.||.||||||||.||..| |||.| ||.||.|||
BL02872___yhe 1304 CATTT-CGCTATCATGACGGTGAAGATGTGCTGAAAAAC--ATCTCATTT 1350
BSNT_01665___ 1354 ACTGCGCAAAAAGGCGAAACCGTAGCGCTCGTCGGCCATACCGGATCAGG 1403
...|||.|..||||.||.|||||.||..|.|||||.|||||.||.|||||
BL02872___yhe 1351 GAAGCGAAGCAAGGGGAGACCGTTGCATTGGTCGGTCATACGGGCTCAGG 1400
BSNT_01665___ 1404 AAAAAGCTCGATTTTGAATCTGCTGTTTCGTTTTTATGATGCGCAAAAAG 1453
.||||||||.||..|||||.|.||.||.||.|||||.|||....||||.|
BL02872___yhe 1401 CAAAAGCTCAATCATGAATGTTCTTTTCCGCTTTTACGATATTGAAAAGG 1450
BSNT_01665___ 1454 GTGATGTCTTAATTGATGGAAAAAGCATTTACAACATGTCAAGACAGGAA 1503
|.||||||..|||.||.||.|.||||||.||..|.||||||||.||||||
BL02872___yhe 1451 GCGATGTCAAAATCGACGGCAGAAGCATATATGATATGTCAAGGCAGGAA 1500
BSNT_01665___ 1504 CTCAGATCCCATATGGGCATTGTGCTTCAGGACCCGTACTTATTCTCGGG 1553
.|||||...|||||||||||.||.||.|||||.||.||||||||.||.||
BL02872___yhe 1501 ATCAGAAAGCATATGGGCATCGTTCTCCAGGATCCTTACTTATTTTCCGG 1550
BSNT_01665___ 1554 TACAATCGGATCTAACGTAAGTCTGGATGACGAAAGAATGACTGA----- 1598
.||.||.|..||.||.||.||.|| |||| |||| ||||
BL02872___yhe 1551 CACGATTGCTTCAAATGTCAGCCT---TGAC-----AATG-CTGATATTA 1591
BSNT_01665___ 1599 ----AGAAGAAATAAAAAATGCACTGCGGCAAGTCGGTGCTGAGCCTCTT 1644
|||..|||||.||.|.||..||...||.|||||.|| |
BL02872___yhe 1592 CTAGAGAGCAAATAGAAGACGCCTTGAAACAGGTCGGGGC---------T 1632
BSNT_01665___ 1645 CTTAAGAAG---------CTTCCGAAGGGCATTAATGAGCCCGTGATTGA 1685
|||.||..| ||.|||||.|||.||.|.|||||.||.||.||
BL02872___yhe 1633 CTTGAGGTGCTCGCCCGTCTGCCGAAAGGCCTTGACGAGCCGGTCATCGA 1682
BSNT_01665___ 1686 AAAAGGCAGCACGCTATCCTCTGGAGAGCGGCAGTTAATTTCTTTCGCTA 1735
||||||.|||||.||.||.||.|||||..|||||.|.||.||.||.||..
BL02872___yhe 1683 AAAAGGAAGCACCCTTTCTTCAGGAGAAAGGCAGCTGATCTCGTTTGCCC 1732
BSNT_01665___ 1736 GAGCTTTGGCGTTTGATCCCGCGA-TCTTGATTTTAGATGAGGCAACGGC 1784
|.||..||||.|..|||||.||.| |||| ||||||||.|||||.|||||
BL02872___yhe 1733 GTGCGCTGGCATACGATCCGGCTATTCTT-ATTTTAGACGAGGCGACGGC 1781
BSNT_01665___ 1785 GCATATTGATACAGAGACAGAGGCCGTGATCCAGAAGGCGCTTGATGTCG 1834
.|||||.|||||.||.|||||.||.||.||.||.||.||||||||.||||
BL02872___yhe 1782 CCATATCGATACCGAAACAGAAGCGGTCATTCAAAAAGCGCTTGACGTCG 1831
BSNT_01665___ 1835 TCAAACAAGGACGCACCACCTTCGTCATCGCTCACCGGCTTTCAACAATC 1884
||||||||||.|||||.|||||..|||||||.|||.||||.|||||.|||
BL02872___yhe 1832 TCAAACAAGGGCGCACAACCTTTATCATCGCCCACAGGCTGTCAACGATC 1881
BSNT_01665___ 1885 AGAAATGCTGATCAGATTTTGGTTCTTGATAAAGGAGAAATTGTTGAGAG 1934
|.|||.||.||.||||||.||||.|||||.|||||....|||.|.||.||
BL02872___yhe 1882 AAAAACGCCGACCAGATTCTGGTGCTTGAAAAAGGCCGGATTATCGAAAG 1931
BSNT_01665___ 1935 AGGGAACCACGAGGAATTGATG--GCATTAGAAGGCCGATATTATCAAAT 1982
.||.||.||.||.||..||||| ||| |.||||||.|||.||||||||
BL02872___yhe 1932 GGGAAATCATGAAGAGCTGATGAAGCA--AAAAGGCCAATACTATCAAAT 1979
BSNT_01665___ 1983 GTATGAACTGCAAAA-GGGACAGAAACATTCC--ATTGCATAA 2022
||||||||||||||| ||||.||.||| || ||.|..|||
BL02872___yhe 1980 GTATGAACTGCAAAAGGGGAAAGGAAC---CCTGATAGGGTAA 2019
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