Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00862 and BL02867
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00862___rapI.1.5803.seq
# -bsequence dna-align/BL02867___rapI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00862___rapI-BL02867___rapI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00862___rapI-BL02867___rapI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00862___rapI
# 2: BL02867___rapI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1364
# Identity: 691/1364 (50.7%)
# Similarity: 691/1364 (50.7%)
# Gaps: 433/1364 (31.7%)
# Score: 1470.5
#
#
#=======================================
BSNT_00862___ 1 TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACATA-GTCA 49
||| |||.|.||.|||||.|..|| ||| ||..
BL02867___rap 1 TTG------------------AAACAGAAGATTCCATCTGA-ATACGTTG 31
BSNT_00862___ 50 CAAAAAAGTTAAATGATTGGTATA----CATT---AATAAA--AGAT--- 87
|.|.||||.|.|||||||||||.| |||| || ||| ||||
BL02867___rap 32 CTAGAAAGCTGAATGATTGGTACAACGCCATTCGGAA-AAATCAGATCGC 80
BSNT_00862___ 88 --------GATCAAGTTGAGCATGCAGAGATTATAAAAATAGAAGTAGAG 129
.|||| |||| |.||.||.|||.||
BL02867___rap 81 CGCCAGTGAATCA--TTGA--AAGCGGAAATTTTA--------------- 111
BSNT_00862___ 130 AAAGAATTGCTAAACATGGAAGAAAACCAAGATGCCTTGTTATATTATCA 179
||.||.||.|.|.|||||||||||||.|..||.|.|.||.|.||.|||..
BL02867___rap 112 AATGATTTTCAAGACATGGAAGAAAATCGGGACGTCCTGCTCTACTATTC 161
BSNT_00862___ 180 GTTATTAGATTTTAGGCACGAGATAATGCTGAGTTATATGAAATCTAAAG 229
|.|..|.||.||.|||||..|..|.|||||.||.|||.|||||.|.||||
BL02867___rap 162 GCTGCTTGAATTCAGGCATAAACTGATGCTCAGCTATTTGAAACCGAAAG 211
BSNT_00862___ 230 A-----AATAGATGATCTCAATAATGCTTATGAGACTATAAAAGAAATTG 274
| ||.|.|| |.||.||..|.|..|.|||| ||.|||||
BL02867___rap 212 AGACTGAAAATAT----TGAAAAAAACCTCCGCGACT-TAGAAGAA---- 252
BSNT_00862___ 275 AGAAACAAGGGCAATTAACTGGTATGTTGGAATATTATTTTTACTTTTTT 324
|||.|||..|||.|.||.|||.|.||..|.|||||||..|..||||||
BL02867___rap 253 --AAAGAAGACCAAATGACGGGTTTATTAAACTATTATTACTGGTTTTTT 300
BSNT_00862___ 325 AAGGGTATGTATGAGTTTAGGCGAAAAGAATTAAC--TTC-----AGCCA 367
||.||.|||||||||||.|..| ||||| | ||| |||.|
BL02867___rap 301 AAAGGGATGTATGAGTTCAAAC-AAAAG------CGGTTCGTCAAAGCAA 343
BSNT_00862___ 368 TAAG-TGCCTATCGAATAGCTGAATCAAAGTTGTC--------GGAAGTT 408
|..| || ||||..||..||||||..||| .||| |||||..
BL02867___rap 344 TCGGCTG-CTATAAAACGGCTGAACAAAA--AGTCAGCGCACTGGAAGAC 390
BSNT_00862___ 409 GAGGATGAAATAGAAAAAGCAGAGTTTTTTTTCA-AAGTGTCCTATG--- 454
|||| |.||||||||.||.||||.|| | ||| || ||
BL02867___rap 391 GAGG------TTGAAAAAGCGGAATTTTATT--ATAAG----CT-TGCGG 427
BSNT_00862___ 455 ---TATATTATTATATGAAACAAACATATTTCTCCATGAATTATGCAAAT 501
|.||.||||||||.||.||.|.|||..|.||.||.||.|||||.|..
BL02867___rap 428 AAATCTACTATTATATCAACCAGAGATACCTGTCGATCAACTATGCGACG 477
BSNT_00862___ 502 CGTGCACTCAAAATATTTAGAGAGTATGAAGAGTATGCGGTCCAAA---- 547
|..||...|.|.||.||||....|||||||..| |.|||
BL02867___rap 478 CTAGCTTCCGACATTTTTAACCGGTATGAAACG--------CTAAAAGAA 519
BSNT_00862___ 548 ---------CTGTGCGTTGTCAATTTATTGTTGCAGGTAACCTG------ 582
.|.|||| |.|||||..||||.||||| .||
BL02867___rap 520 AAAAAGATTTTCTGCG-----ATTTTATCATTGCCGGTAA-TTGGGTTGA 563
BSNT_00862___ 583 ATCGATTCTTTAGA-ATAC-----------GAAAGAGCCTTGGAACAAT- 619
|||||| || |||| |||| ||||| |..||||
BL02867___rap 564 ATCGAT------GACATACGGACCCGCGCTGAAA-AGCCT--GGCCAATG 604
BSNT_00862___ 620 ---TTCTGAATTCTTTGGAAATTGCCAAGGGAAGTAACATAGAG-CATTT 665
|| |||...||| |||.||.|.|.|.|.|| |||||
BL02867___rap 605 CGCTT------------GAAGACGCC-AGGAAAATCAAAAACAGCCATTT 641
BSNT_00862___ 666 AATTGCAATGTCACACA--TGAATATTGGG-ATTTGTTAT------GATG 706
.|..||| |.|.|.|| |.||| ||||| |.|||.||| .|.|
BL02867___rap 642 GACGGCA--GCCGCTCATTTTAAT-TTGGGAAATTGCTATTTCCACCAAG 688
BSNT_00862___ 707 AATTGAA------------AGA--ATATAAAAAG-GC---TTCACAACAT 738
|||.|.| ||| ||||..|.|| || ||| |||
BL02867___rap 689 AATCGTACCGGGAAGCCTCAGATCATATGGAGAGCGCCCTTTC----CAT 734
BSNT_00862___ 739 TTAATTTTAGCGTTAGAAATTTTCGAAAAATCAAAACATAGTTTCCTAAC 788
| |||.|.| ||.||..||| |.||||..|||| |
BL02867___rap 735 T---TTTGAAC---AGGAAAGTTC----------ATCATATATTCC---C 765
BSNT_00862___ 789 AAAG---------ACTTTAT-----TCACTCT----------AACCTATG 814
|||| ||||.|| ||..||| |||| |||
BL02867___rap 766 AAAGTGCTGTACAACTTGATGTACGTCCGTCTCAAGCAGGGGAACC-ATG 814
BSNT_00862___ 815 TAGAAGCAAAACAACAAAATTATGATGTTGCTTTGATATACTTTAGGAAA 864
..|.||| ||..|| .||.||| |.|||
BL02867___rap 815 CCGGAGC------------------TGCCGC-CTGTTAT------GAAAA 839
BSNT_00862___ 865 GGGCGATTTATTGCCGATAAAAGTG----AT--------GATAAGGAATA 902
.||| || ||| |||.| || |||.|.|||.|
BL02867___rap 840 AGGC-----AT--CCG----AAGCGCGGCATCGCTCGGGGATGAAGAACA 878
BSNT_00862___ 903 CTCAGCGAAA--TTCAAAATATTAGAGGGGT-TATTTTTTTCAGATGGCG 949
|.|.|| ||| ||.|.|.|.|..|.|||.| ||||| |||.||.|
BL02867___rap 879 CGCGGC-AAAGCTTAACATTCTGTGCGGGCTGTATTT-----AGACGGAG 922
BSNT_00862___ 950 AGACTCAATTAATAAAG--------AATGCATTTTCATATCTGGCTTCGA 991
.|..|| |.|||| ||.|.||||...||| ||.||
BL02867___rap 923 GGGATC-----AGAAAGCCGTGGAAAACGGATTTGATTAT-----TTGGA 962
BSNT_00862___ 992 GAAAAA-----TGTTTGCAGATGTTGAAAA----TTTTTCGATTGA---- 1028
|..||| |.|.|||.|.|||||||.| ..|||.|||..|
BL02867___rap 963 GTCAAATCATTTATATGCTGCTGTTGAAGAGCTGGCTTTAGATGCAGCCC 1012
BSNT_00862___ 1029 AGTCGCTGATTATTTTCATGAACAAGGAAATTTA-ATGCTCTCTAATGA- 1076
||| ||||| ||..|||||.| ..||| .||.||
BL02867___rap 1013 AGT-----ATTAT----------AATCAAATTGAGCGGCT---GAAAGAT 1044
BSNT_00862___ 1077 ---ATATTATCGTATGAGTATTG-----AAGCAAGACGAAAAATTAAAAA 1118
||.||.|..|||||..|.|| |.|||||.|||||||| .|||
BL02867___rap 1045 TCCATTTTTTACTATGAAAAGTGCGCTCAGGCAAGTCGAAAAAT--CAAA 1092
BSNT_00862___ 1119 AGGGGAGAT------TATTAATGAAAATCAGCCGGATTCTATTGGCAGCA 1162
||||||||| |||.||.|..||
BL02867___rap 1093 AGGGGAGATGCGTTGTATGAAAGCTAA----------------------- 1119
BSNT_00862___ 1163 GTGATATTAGGTAG 1176
BL02867___rap 1119 -------------- 1119
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