Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01690 and BL02865
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:10
# Commandline: needle
# -asequence dna-align/BSNT_01690___yhaP.1.5803.seq
# -bsequence dna-align/BL02865___yhaP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01690___yhaP-BL02865___yhaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01690___yhaP-BL02865___yhaP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01690___yhaP
# 2: BL02865___yhaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1339
# Identity: 893/1339 (66.7%)
# Similarity: 893/1339 (66.7%)
# Gaps: 149/1339 (11.1%)
# Score: 2757.5
#
#
#=======================================
BSNT_01690___ 1 ATGAATAAATTTTGGATCATGCTTTCTCATACATACAAAAATAAGATTAT 50
||||||||.||||||||..|.||||.|||||||||.|..|..|||.|.|.
BL02865___yha 1 ATGAATAAGTTTTGGATTGTTCTTTTTCATACATATATCAGCAAGCTGAA 50
BSNT_01690___ 51 GGCAAAATCCTTTATTATTTCGACTGTCATCACG-GTGCTGCTTGTTTTA 99
..|.||.||.||.||.|||||.||.|.||||||| .||| ||||||..|.
BL02865___yha 51 AACGAAGTCGTTCATCATTTCAACGGCCATCACGCTTGC-GCTTGTCGTG 99
BSNT_01690___ 100 GTTGTAACGAATCTGGAGTCGATCATTTCTTTGTTTCAAGGTGACGA-TG 148
.|.||.||.|||.|||..|||||.|||||..|||| |||||| .|
BL02865___yha 100 CTCGTCACAAATTTGGGATCGATTATTTCCATGTT------TGACGACGG 143
BSNT_01690___ 149 CGAA-----AGAAAAAATCGCCGTTGTTGATGAAACAAACGAATTATATC 193
||.| .||.||.|||||.||..|||||....||||..|..|.||
BL02865___yha 144 CGGAGAGGGTGACAAGATCGCTGTCATTGATCGCTCAAATCAGCTGTA-- 191
BSNT_01690___ 194 CG----GTTTTTTCTAAGCAGCTGAAAGCGGTGGATACTGACG--GCGAT 237
|| | |||.|..|||||.|||||||..|.||||||||.| |||
BL02865___yha 192 CGACACG--TTTGCCCAGCAGGTGAAAGCACTCGATACTGATGAAGCG-- 237
BSNT_01690___ 238 CTTGATGT----GAAGCTG-TCGAAGCAATCGGAGGATGAG-GTCACAAA 281
||.||.|| .||||.| | |||| ||||..|.||| .|.|.|||
BL02865___yha 238 CTGGAGGTCCAAAAAGCGGAT--AAGC---CGGAAAAAGAGCTTGAAAAA 282
BSNT_01690___ 282 GCAAGTCAAAGATGAATCACTCGATGGCATGCTCATCATCAAACGAGATG 331
| |.||||.|||.|||...|||||.|||||..|.|||.|..|..|||||.
BL02865___yha 283 G-ACGTCAGAGACGAAAAGCTCGAGGGCATTTTAATCCTGGAGAGAGATA 331
BSNT_01690___ 332 AAAAAGGGACCATTTC----AGGAACATATAAAGCGTTAACGATTTCTGA 377
|||||||| .|.| ||||||.|||||||||.| ||||.|| |.
BL02865___yha 332 AAAAAGGG----GTGCTGAAAGGAACGTATAAAGCGCT--CGATATC-GC 374
BSNT_01690___ 378 TGAAAGCAC----GTATCAAACGCTGCAGCAGGCGCTGACGCAAACCAAA 423
|||...||| ||.|| .|||.|..|.||||||||..|||||.|.||.
BL02865___yha 375 TGATTCCACAGCTGTCTC-CACGATTGAACAGGCGCTCTCGCAAGCAAAG 423
BSNT_01690___ 424 ACAGCTGTCGGAACAGCGGAGCTCGGCGTGTCGCAGGAAACGATTAG--- 470
|..||.||.|||||.||.||..|...|||..|.|||||||.|.|.||
BL02865___yha 424 ATCGCCGTTGGAACGGCTGAATTGAACGTACCTCAGGAAAAGCTGAGTGA 473
BSNT_01690___ 471 -CAGCCTTTATGCGCCCGTTACTGTGGGGCAGAAG----GCGCTGAAAGA 515
|.| |||| |.||.||.|..|| ||..|| ||..|||||||
BL02865___yha 474 ACTG--TTTA--CACCGGTAAAAGT----CAACAGTGTTGCCTTGAAAGA 515
BSNT_01690___ 516 AGGGGCAAAGTCTGAGGAAGAGCTT-----GGCCAGACGGTAGGGCTTGT 560
|||.||.||..|.|||||||||||| ||| ||| |||||||||
BL02865___yha 516 AGGCGCGAAAACCGAGGAAGAGCTTCAAAAGGC--GAC---AGGGCTTGT 560
BSNT_01690___ 561 TTACATTATGCTGTTCGTCATTTATTTTTCGGTGATTATGTATGC--CAG 608
.||..||.|||||||.|||||.||||||||.||..|.|||||.|| ||
BL02865___yha 561 GTATGTTGTGCTGTTTGTCATCTATTTTTCCGTTTTGATGTACGCTTCA- 609
BSNT_01690___ 609 CATGATTGCGATGGAGGTCGCTACAGAAAAATCTTCGCGAGTTATGGAAA 658
||||||||||..||.||.||.||.||.||.|||||.||.||.|||||||
BL02865___yha 610 -ATGATTGCGACAGAAGTAGCGACGGAGAAGTCTTCCCGCGTAATGGAAA 658
BSNT_01690___ 659 TCCTGATCTCAAGTATGCCGCCGATCCAGCAAATGTTTGCAAAGCTGCTT 708
|..|.||.||.|||.|||||||..|||||||||||||.||.||.|||.|.
BL02865___yha 659 TTTTAATTTCCAGTGTGCCGCCTGTCCAGCAAATGTTCGCCAAACTGTTC 708
BSNT_01690___ 709 GG--------TATCGGGCTTGTCGGGATCACACAGCTTGC------TATT 744
|| |||..|||.|| ||||||||||| ..||
BL02865___yha 709 GGCGTTGCCCTATTAGGCCTG--------ACACAGCTTGCCGCGCTCCTT 750
BSNT_01690___ 745 ATTATAGGAGCCGGCTCTCTGTCGCTTAAGCTGAACCAAAAGAGCGAAAC 794
.|| |||||||.||||||||||.||...|.|||..|.||||.|..
BL02865___yha 751 CTT------GCCGGCTATCTGTCGCTTCAGTCCAGCCAGGAAAGCGGAGG 794
BSNT_01690___ 795 GGCTTCATCTGTCGGC--------GGATTCCTTAATCTGACCGACGTA-- 834
||.|.|..||| .|| |||||..||.||.|..|||.||||
BL02865___yha 795 GGATGCGGCTG--AGCTGGTTAAAGGATTTTTTGATGTTTCCGGCGTACC 842
BSNT_01690___ 835 -TCTGCAACCACTGTCATCTATGCTGTCATTTTCTTTTTGCTCGGATACT 883
.|||||||...|| |.||.||.|||||||||||..|||||||.||||
BL02865___yha 843 TACTGCAACGCTTG---TGTACGCGGTCATTTTCTTGATGCTCGGCTACT 889
BSNT_01690___ 884 TTTTGTACGCGACACTTGCCGCGTTTCTCGGCAGTGTCGTCAGCAGAATA 933
|.||.|||||.||.|||||.||.||||||||.||.|||||||||.|.||.
BL02865___yha 890 TCTTATACGCAACTCTTGCGGCATTTCTCGGAAGCGTCGTCAGCCGGATT 939
BSNT_01690___ 934 GAGGACGTGCAGCAAACGATCACGCCGATGACGCTTTTGGTTGTCGCCGG 983
||.||.||.|||||.|.|||..|||||||||..||.|||||.||.|||||
BL02865___yha 940 GAAGATGTTCAGCAGATGATTTCGCCGATGATCCTGTTGGTCGTTGCCGG 989
BSNT_01690___ 984 TTTTATGATCGCGATGTTCGGTTTGAATGCGCCTGACGCAGGA--TTTAT 1031
.||.|||||.||.||||||||..|||||||.||.||..| || |||||
BL02865___yha 990 ATTCATGATTGCCATGTTCGGACTGAATGCTCCGGATTC--GACGTTTAT 1037
BSNT_01690___ 1032 TACGGTAACTTCGTTTATTCCGTTCTTTACGCCAATGATTATGTTCCTGC 1081
|||..|.|||||.||.||||||||.|||.||||.|||||.||||||||..
BL02865___yha 1038 TACCATCACTTCATTCATTCCGTTTTTTGCGCCGATGATCATGTTCCTCA 1087
BSNT_01690___ 1082 GCGTCGGCATGCTTGATATTCCGTTCTGGCAGGCGGCTGTCGGAATCGGA 1131
|.||||||.||||||||||||||||.|||.|.||||||.||||.|||||.
BL02865___yha 1088 GAGTCGGCGTGCTTGATATTCCGTTTTGGGAAGCGGCTCTCGGCATCGGC 1137
BSNT_01690___ 1132 ATCA-CACTGCTCACCATTGTCATACTGGCCGTTATCGGCGCCAGAATTT 1180
|||| |.|| |||||.|||||.||.||.|||||.|||||.||.||..|.|
BL02865___yha 1138 ATCACCGCT-CTCACGATTGTGATTCTCGCCGTCATCGGGGCGAGGGTGT 1186
BSNT_01690___ 1181 ATAAAGGCGGTGTATTAATTTACGGCAATTCAAGC----GCG--TTCAAA 1224
||||||||||.||..|.||.||| .||||| ||| ||.|||
BL02865___yha 1187 ATAAAGGCGGCGTGCTCATGTAC------ACAAGCGGCGGCGGATTGAAA 1230
BSNT_01690___ 1225 GCGATCAAACAAGCGCTACGTTTAGCGAAAAACTGA--- 1260
...||||||||.|||||.|||.|..|.|||.|..||
BL02865___yha 1231 AATATCAAACAGGCGCTTCGTCTGTCAAAAGATCGATAA 1269
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