Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01637 and BL02852
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01637___yhdL.1.5803.seq
# -bsequence dna-align/BL02852___yhdL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01637___yhdL-BL02852___yhdL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01637___yhdL-BL02852___yhdL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01637___yhdL
# 2: BL02852___yhdL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1174
# Identity: 737/1174 (62.8%)
# Similarity: 737/1174 (62.8%)
# Gaps: 203/1174 (17.3%)
# Score: 2153.5
#
#
#=======================================
BSNT_01637___ 1 ATGAATGAAGAATTTAAAAAGCGTTTTGATCAATATAAAAATGGGGAAAT 50
|||||||||||.||||||||.||||..||..||||||||||.||.|||.|
BL02852___yhd 1 ATGAATGAAGATTTTAAAAAACGTTGGGAAAAATATAAAAACGGCGAACT 50
BSNT_01637___ 51 GAGCGACCAGGAAATGACTGC-ATTTGAGGAAGAACTTGAGAAGCTCGAA 99
...|||...||||||| ||.| ..|.||.|||||.|||||..||||.|||
BL02852___yhd 51 TTCCGAATCGGAAATG-CTCCGGGTCGAAGAAGAGCTTGAACAGCTTGAA 99
BSNT_01637___ 100 GTATATCAGGAACTGATTG-ACAGCGAACTAGAGGACGATAACGATTGGG 148
|.|||.|||||..||.|.| |||| |||.|..|.|||| |.||.||||
BL02852___yhd 100 GAATACCAGGACATGCTGGAACAG-GAAATGAAAGACG---AAGACTGGG 145
BSNT_01637___ 149 ATCTCAGC-ATCAGTCCTGAAAAACAAAAAGCGATTTTAGCCTACGGCAA 197
|| |..|| ||||||||||||||.|||||||||||||||...|||||.||
BL02852___yhd 146 AT-TTGGCGATCAGTCCTGAAAAGCAAAAAGCGATTTTAAGATACGGAAA 194
BSNT_01637___ 198 ACGCAAGTCTTATTTGCGAATTTCTGTGCTTGCCGTCATTTCGACATTGA 247
|...||.||.|||.||||.||.||....|||||.||.|||||.||..|.|
BL02852___yhd 195 AAATAAATCATATATGCGGATCTCCACCCTTGCTGTTATTTCTACGCTTA 244
BSNT_01637___ 248 TGATTTTGCCGCTTTGTACGCTGGGAAGCTACCTCTATTACGGAATGGGT 297
|.|||.|||||.|.||.||.||.||.|||||.||.||.|||||..||||.
BL02852___yhd 245 TTATTCTGCCGATCTGCACACTCGGCAGCTATCTATACTACGGGTTGGGC 294
BSNT_01637___ 298 GGGAAACACAGCACCGGCAATGAGTTTATGGAAACTGCCGCAGTCACTGT 347
|||.|..|.||||..||.|||||..|..||.||||.||..||.|.||.||
BL02852___yhd 295 GGGCATGAAAGCAAAGGGAATGAACTGGTGCAAACCGCTTCAATGACAGT 344
BSNT_01637___ 348 AGCCCTGACCATGCCGAATGTTCTTGTTGATACTTCCGGACTGAAAAGCC 397
.|||.|.||.|..||||||.|||..||.|||||| .|||||
BL02852___yhd 345 TGCCGTCACAAACCCGAATATTCAAGTCGATACT----------GAAGCC 384
BSNT_01637___ 398 ----------AAGTGAAGCTATTTGGAAT-GAATACGGAATTCCCGCTGC 436
||||.||.||.|||||||| ||| ||..|.||||||.|..
BL02852___yhd 385 CTTGTCAACAAAGTAAAACTCTTTGGAATCGAA-ACACAGTTCCCGTTAA 433
BSNT_01637___ 437 AAAAGCAGATTGG------CACGAAGACGGCTGCCGTAGGGAATGAACGG 480
|.|||||.||.|| |||.|| .|..||.||.||||||...
BL02852___yhd 434 AGAAGCAAATCGGAAACGTCACAAA------AGTAGTTGGAAATGAAGAA 477
BSNT_01637___ 481 GTTGAAATGTT-TTATAACA----AAGTAAAAGCGCCGGCAG-----TAA 520
||.|||||||| ||..|.|| |||| |.|| |||| |.|
BL02852___yhd 478 GTGGAAATGTTCTTCGATCAGCTGAAGT-----CTCC-GCAGATTCATCA 521
BSNT_01637___ 521 ACTACTATGA----CTT-----AGAAGTGAATATAACCGGCCATTACTT- 560
| |||.||.| ||| ||||| ||| |.|||| ||
BL02852___yhd 522 A-TACAATCAGGAGCTTTCAAAAGAAG-------AAC--GTCATT--TTG 559
BSNT_01637___ 561 --TACACATCCT-------TCAAACAAGTCTGAACAAAC---GACCGCAA 598
||| ||| ||||| |||.||.| |.|| |
BL02852___yhd 560 TCTAC----CCTGACGGCATCAAA-------GAAAAATCAGTGTCC---A 595
BSNT_01637___ 599 AAGCAGA--------AAAAACGTTAAGCACATTGCCTGAAGGAACGGTAT 640
||||.|| .||||| ||| |||||||.|||||.|||.
BL02852___yhd 596 AAGCCGAGTCGATTTTAAAAC----AGC----TGCCTGACGGAACCGTAA 637
BSNT_01637___ 641 CAGAGGTCTACCTTTCATATGACCGTGCATATCCGACAAAAGACGTGTAT 690
|.||.|..|.||||||.|.|||....|||||.||||||||.||..|||||
BL02852___yhd 638 CCGAAGCTTTCCTTTCCTTTGAAAAAGCATACCCGACAAAGGAGCTGTAT 687
BSNT_01637___ 691 AACAAATTCAAAGGCTATGATGTGAGCTTTTTGTGGAACGCAATCGAAAC 740
.|.|||||.||||||||||||||..||.||.|||||||.||.||.|||||
BL02852___yhd 688 GAAAAATTAAAAGGCTATGATGTTCGCGTTCTGTGGAATGCGATTGAAAC 737
BSNT_01637___ 741 AGAG--------AAAAACACAAATAAGA-CAGCTTCCA----CAGAACCT 777
|||| || |||| || |||| ||||.||.
BL02852___yhd 738 AGAGGGCGATTTAA----------AAGATCA---TCCATACGCAGAGCCG 774
BSNT_01637___ 778 CTTGGCTATCCTGGAAAGGATTCAAA----GTTCTTGGCCGCCCTTAATA 823
.|.||.|.|||.|||||.|||||||| .||.||| .|||.
BL02852___yhd 775 ATCGGATTTCCCGGAAAAGATTCAAACCGGATTTTTG--------AAATT 816
BSNT_01637___ 824 CAAAAGGCAA---GTCGA-----ATGGCGATCAGTTTATCAA----CGC- 860
|| |||| |.||| |||.|||.||||||| || |||
BL02852___yhd 817 CA----GCAACCTGCCGAAAACGATGACGAACAGTTTA--AAGCGGCGCT 860
BSNT_01637___ 861 --CCTAAAATTCATGTCCAAACACGAAAAATGGGCTCAGGTCATTTCAAA 908
|||| ||||..|||..||.|.|||||||||.|...|||||||..
BL02852___yhd 861 TTCCTA-----CATGATCAAGAACAAGAAATGGGCTGAAACCATTTCAGG 905
BSNT_01637___ 909 ACGGAAAGACCTGAATGTAGAT-----AACCGATTAGATTATGTAGAGAA 953
..|||||||||||| ||.| |||.|.|| ||.|||||.||..|
BL02852___yhd 906 CAGGAAAGACCTGA----AGCTTTCCAAACGGCTT-GACTATGTGGAACA 950
BSNT_01637___ 954 AAACGGTGTCAATGTATACGGTTCGGTCGTTACAGGGCCAACCAAGGAAA 1003
.||.|||||.||.||.||.||..|.|||.||||.||.||..|.||.||..
BL02852___yhd 951 GAATGGTGTGAACGTGTATGGAGCCGTCATTACCGGACCGTCAAAAGAGG 1000
BSNT_01637___ 1004 TCCAGCGCATGCTGAAAAATAAA---TCTGTAAAATCAGCGAATGTCGGC 1050
|..|.|| |||||..||.||| .||||.|||.||||.||.||.||.
BL02852___yhd 1001 TTGAACG---GCTGATCAAAAAAGGGCCTGTCAAAGCAGCTAAAGTAGGT 1047
BSNT_01637___ 1051 GAGGTGGAATTATGGAACTGGTAA 1074
||||||||||||||||||||||||
BL02852___yhd 1048 GAGGTGGAATTATGGAACTGGTAA 1071
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