Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01641 and BL02847
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_01641___yhdP.1.5803.seq
# -bsequence dna-align/BL02847___yhdP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01641___yhdP-BL02847___yhdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01641___yhdP-BL02847___yhdP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01641___yhdP
# 2: BL02847___yhdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1378
# Identity: 1001/1378 (72.6%)
# Similarity: 1001/1378 (72.6%)
# Gaps: 98/1378 ( 7.1%)
# Score: 3648.5
#
#
#=======================================
BSNT_01641___ 1 TTGGACATAGTGAATTTGATTTTAGTTGCTGTTTTAATCGCCCTGACGGC 50
|||||.|||||.|||||||||||.||||||||.|||||.||..|.||.||
BL02847___yhd 1 TTGGAAATAGTTAATTTGATTTTTGTTGCTGTATTAATTGCTTTAACAGC 50
BSNT_01641___ 51 ATTTTTCGTGGCATCTGAGTTTGCCATTATCAGAATCAGAGGCTCACGGA 100
|||||||||.||.|||||||||||.|||||||||||||||.||||.|||.
BL02847___yhd 51 ATTTTTCGTAGCGTCTGAGTTTGCGATTATCAGAATCAGAAGCTCGCGGG 100
BSNT_01641___ 101 TCGATCAGCTGATCGCGGAAGGAAATAAAGCAGCAATAGCCGTAAAAAAA 150
|.||||||||.||.||.||||||||.|||.||||.||..|.||.||||||
BL02847___yhd 101 TTGATCAGCTCATTGCTGAAGGAAACAAAACAGCGATTTCGGTGAAAAAA 150
BSNT_01641___ 151 GTGACCACGCATCTT-GATGAATATTTATCTGCGTGTCAGCTCGGAATTA 199
||.|..||||| ||| ||.|||||||||||.||.||.||||||||.||.|
BL02847___yhd 151 GTCATTACGCA-CTTAGACGAATATTTATCGGCCTGCCAGCTCGGCATCA 199
BSNT_01641___ 200 CATTGACTTCCATCGGATTAGG--GGTTTTAGGTGAATCAACGATCGAAA 247
|.|||||..|..||||..|.|| || .|.||.||..|.|||.|||...
BL02847___yhd 200 CTTTGACGGCTCTCGGTCTCGGATGG--CTCGGGGAGCCGACGGTCGCCC 247
BSNT_01641___ 248 GGCTGCTTCACCCGCTTTTCGTCCAAAT-GAACGTTCCAGGTTCCCTTTC 296
||||||||.|.|||||.||.|| .|||| ||.|.||||..|.||..|.||
BL02847___yhd 248 GGCTGCTTGAACCGCTATTTGT-TAAATGGAGCATTCCGAGCTCTGTATC 296
BSNT_01641___ 297 ACATGTCATATCGTTT-ATTTTTGCGT-AT-GCCATT-------ATCACG 336
| ||.||||||| |.| ||| || ||| || ||.|||
BL02847___yhd 297 A-----CACATCGTTTCAGT----CGTGATCGCC-TTCAGCTTGATTACG 336
BSNT_01641___ 337 TTCTTACACGTTGTTGTCGGAGAACTTGCACCTAAGACAGTCGCTATCCA 386
||.||.||.||.||||||||.||.||.||.||.|||||..|.||.|||||
BL02847___yhd 337 TTTTTGCATGTGGTTGTCGGCGAGCTCGCTCCGAAGACGCTTGCGATCCA 386
BSNT_01641___ 387 AAAGGCGGAAGCAGTGTCTATGCTGTTTGCGAAACCGCTGATTTGGTTTT 436
|||.||||||||.||.||..|.||.|||||.|||||..||||.|||||.|
BL02847___yhd 387 AAAAGCGGAAGCCGTTTCCTTTCTTTTTGCAAAACCTTTGATCTGGTTCT 436
BSNT_01641___ 437 ACCGCATCGCGTTCCCATTCATTTGGCTTTTGAACAATTCCGCACGGTTA 486
|||||||...||||||||||||.|||....|||||...||.|||.||.|.
BL02847___yhd 437 ACCGCATTATGTTCCCATTCATCTGGGCGCTGAACGGATCAGCAAGGCTG 486
BSNT_01641___ 487 TTGACCAAAGCATTTGGCCTGGAGACCGTTTCAGAAAACGAACTGGCTCA 536
|||||.|||||.||||||||.||..|.|||||.|||||.|||.||||.||
BL02847___yhd 487 TTGACGAAAGCGTTTGGCCTTGAAGCGGTTTCTGAAAATGAAATGGCGCA 536
BSNT_01641___ 537 CTCAGAAGAAGAGCTGCGAATCATTTTGTCTGAAAGCTATAAAAGCGGTG 586
||||||.||||||||||||||.|||.||||.|||||||||||||||||.|
BL02847___yhd 537 CTCAGAGGAAGAGCTGCGAATTATTCTGTCAGAAAGCTATAAAAGCGGCG 586
BSNT_01641___ 587 AAATCAACCAATCAGAGTTTAAATATGTGAATAAAATCTTTGAATTTGAC 636
|||||||.|||||.|||||.||||||||.||.|||||.||||||||.||.
BL02847___yhd 587 AAATCAATCAATCTGAGTTCAAATATGTCAACAAAATTTTTGAATTCGAT 636
BSNT_01641___ 637 GACAGGCTCGCGAAAGAAATTATGATTCCGCGGACCGAAATTGTCAGCCT 686
|||.|.||.||.||.|||||.|||||.|||.|.||.|||.|.|||||..|
BL02847___yhd 637 GACCGTCTTGCCAAGGAAATCATGATCCCGAGAACAGAAGTCGTCAGTTT 686
BSNT_01641___ 687 TCCGCATGATATCAAGATTTCTGAAATGATGGACATCATTCAGATTGAAA 736
|||..|||||||.||.||..|.||.|||||.|||||||...||...|||.
BL02847___yhd 687 TCCAAATGATATGAAAATCGCCGAGATGATTGACATCACGAAGGCCGAAG 736
BSNT_01641___ 737 AATATACCCGCTACCCTGTGGAAGAGGGCGATAAAGATAACATTATCGGG 786
..|||||||||||.||.||.|||||.||.|||||.||.|||||..||||.
BL02847___yhd 737 GCTATACCCGCTATCCCGTCGAAGACGGTGATAAGGACAACATCGTCGGC 786
BSNT_01641___ 787 GTTATTAACATTAAAGAAGTGCTGACAGCCTGCATAAGCGGTGAGGTAT- 835
||.||.||..|.||.|||.|.|||||.||||||||.|||||.|| ||
BL02847___yhd 787 GTCATCAATGTCAAGGAAATACTGACGGCCTGCATCAGCGGAGA---ATG 833
BSNT_01641___ 836 CT-----GTTGATTCCACCATTTCTCAATTCGTCAACCCGATCATTCATG 880
|| |..|| |||.|||...||.||..||||.|||||||||||||
BL02847___yhd 834 CTCCAAAGAAGA---CACGATTGAACAGTTTATCAATCCGATCATTCATG 880
BSNT_01641___ 881 TCATTGAATCTGCGCCGATCCAAGACCTGCTTGTCAAAATGCAAAAAGAG 930
|.||.|||.|.|..||||||||.||.||||||.|.||||||||.||||||
BL02847___yhd 881 TGATCGAAACCGTTCCGATCCACGATCTGCTTCTGAAAATGCAGAAAGAG 930
BSNT_01641___ 931 AGGGTCCACATGGCCATTTTGTCTGATGAATACGGCGGTACTGCCGGGCT 980
.|.||.||.|||||.||..|.|||||||||||||||||.||.|||||.||
BL02847___yhd 931 CGCGTTCATATGGCGATCCTTTCTGATGAATACGGCGGAACGGCCGGACT 980
BSNT_01641___ 981 TGTGACGGTTGAGGACATCATTGAGGAAATTGTCGGTGAAATCCGCGACG 1030
.||||||||.||.|||||||||||.|||||.|||||.|||||||||||||
BL02847___yhd 981 CGTGACGGTCGAAGACATCATTGAAGAAATCGTCGGCGAAATCCGCGACG 1030
BSNT_01641___ 1031 AATTTGATATTGATGAAATTAGCGAAATCCGCAAAATCGGCGAAGGCCAT 1080
||||.||||||||||||||||..|||||||||||||||||||||..|||.
BL02847___yhd 1031 AATTCGATATTGATGAAATTAATGAAATCCGCAAAATCGGCGAAAACCAC 1080
BSNT_01641___ 1081 TATATTCTTGACGGAAAAGTGTTAATTGACCAAGTAAACGACCTGCTAGG 1130
||.|||||.|||||.||||||.|..|..||||.||.|||||..||||.||
BL02847___yhd 1081 TACATTCTCGACGGCAAAGTGCTCGTCAACCAGGTCAACGATTTGCTCGG 1130
BSNT_01641___ 1131 CATTCATTTAGAGAACGAAGAAGTCGACACAATCGGCGGCTGGTTCCTTA 1180
||||||..|.||.||.||.||..|.|||||.||||||||.||||||||.|
BL02847___yhd 1131 CATTCAGCTCGACAATGAGGAGATTGACACGATCGGCGGATGGTTCCTGA 1180
BSNT_01641___ 1181 CTCAAAAATACGATGTTGAAAAAG-----ATGATTCCATCATCGAAGAGG 1225
|.||||||||.||.||..|||||| ||| ||||.|||..|||
BL02847___yhd 1181 CGCAAAAATATGACGTCCAAAAAGGCGACATG-----ATCACCGAGCAGG 1225
BSNT_01641___ 1226 GCTGCGAATTCATCATTAATGAAATTGACGGCCACCACGTGGCATATATT 1275
|.|..|||||||..||.||.|||||.|||||||||||.||..||||..||
BL02847___yhd 1226 GATTTGAATTCACGATCAACGAAATCGACGGCCACCATGTTTCATACGTT 1275
BSNT_01641___ 1276 GAAGTGAAAAA------------------GCTTCAAGAAGAAGAACTTCT 1307
||.|||||||| ||||.||||||..|||
BL02847___yhd 1276 GAGGTGAAAAAAGCTGCGGAAACGCCGCTGCTTGAAGAAGCGGAA----- 1320
BSNT_01641___ 1308 GGAGACAGCTAACCAGCAGGAAGCATAA 1335
|||
BL02847___yhd 1321 ---------TAA---------------- 1323
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