Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01648 and BL02844

See Amino acid alignment / Visit BSNT_01648 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_01648___ccrB.1.5803.seq
#    -bsequence dna-align/BL02844___yhdV.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01648___ccrB-BL02844___yhdV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01648___ccrB-BL02844___yhdV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01648___ccrB
# 2: BL02844___yhdV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 457
# Identity:     258/457 (56.5%)
# Similarity:   258/457 (56.5%)
# Gaps:         119/457 (26.0%)
# Score: 654.0
# 
#
#=======================================

BSNT_01648___      1 ATGAAAATATATAGCGCGGTTTTTATCGGAGGCGCGCTTGG--CGCCTGC     48
                     ||||||..||||...||.|||||||||||.||.||..|.||  || ||| 
BL02844___yhd      1 ATGAAATCATATGTTGCCGTTTTTATCGGGGGAGCCATCGGATCG-CTG-     48

BSNT_01648___     49 CTCCGATACGGATTAAACTTATGGATACACACCGGTCAGTTCCCGGCGGC     98
                     ||.||.||||.|.|.||                  ||  |.|.|||||||
BL02844___yhd     49 CTGCGCTACGCAGTCAA------------------TC--TGCTCGGCGGC     78

BSNT_01648___     99 AACC------------TGGC---------TGGAAAATGCGGCAGGCAGCC    127
                      |||            ||||         |.|||||..||.|.||.||||
BL02844___yhd     79 -ACCGCCGTTTTTCCTTGGCCGACTTTTATTGAAAACACGTCCGGAAGCC    127

BSNT_01648___    128 TTCTATTAGGCATTTTGACCGGATTTTTTATGATCG----GGGCAAAACG    173
                     ||||..|.|||.|||||||.||.||||||    .||    ||||||||..
BL02844___yhd    128 TTCTGCTCGGCCTTTTGACAGGCTTTTTT----GCGGCTCGGGCAAAAAA    173

BSNT_01648___    174 GCCTCTGCT-GTCGGCTTTT--TTAGGCACCGGCTTTTGCGGAGGCTTCA    220
                     |||   ||| |||...||.|  |||||.||.||.||||||||.||.|..|
BL02844___yhd    174 GCC---GCTCGTCCAATTATGCTTAGGGACGGGGTTTTGCGGCGGGTATA    220

BSNT_01648___    221 CAACAATGTCCACGTTTTCTAAGGAAACGGTGATGCTTTTGCAA--GGAC    268
                     |.|||||||||.|.||||||||.|||||.||..|.||..|||||  || |
BL02844___yhd    221 CGACAATGTCCGCTTTTTCTAAAGAAACCGTACTTCTGCTGCAATCGG-C    269

BSNT_01648___    269 AACCCTCATTG--GCTCTTTTATATG-TGGCA------GCCTCATTGATA    309
                     ..|.|.|||.|  |.|| |.||..|| |||||      ||||        
BL02844___yhd    270 CGCTCACATCGGAGTTC-TGTACTTGATGGCATCGCTTGCCT--------    310

BSNT_01648___    310 TCAGGGATCATATTTGCACTGATTGGTGTTTTTGCGGGA-------CGGC    352
                     .|.|||    ||       ||.||.|..|||||| ||||       ||||
BL02844___yhd    311 GCGGGG----TA-------TGCTTCGCATTTTTG-GGGATCGTGATCGGC    348

BSNT_01648___    353 GCATAGCAGGCATTCAGC------------AAAG-AAAGGGGCTGCAGGA    389
                     ..|.||      .|||||            |||| |||||.||.|.|..|
BL02844___yhd    349 AAAAAG------GTCAGCGGAGCTGCGGGGAAAGAAAAGGAGCGGTATCA    392

BSNT_01648___    390 AAGATGA    396
                     |..||||
BL02844___yhd    393 ATCATGA    399


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