Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01648 and BL02844
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_01648___ccrB.1.5803.seq
# -bsequence dna-align/BL02844___yhdV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01648___ccrB-BL02844___yhdV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01648___ccrB-BL02844___yhdV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01648___ccrB
# 2: BL02844___yhdV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 457
# Identity: 258/457 (56.5%)
# Similarity: 258/457 (56.5%)
# Gaps: 119/457 (26.0%)
# Score: 654.0
#
#
#=======================================
BSNT_01648___ 1 ATGAAAATATATAGCGCGGTTTTTATCGGAGGCGCGCTTGG--CGCCTGC 48
||||||..||||...||.|||||||||||.||.||..|.|| || |||
BL02844___yhd 1 ATGAAATCATATGTTGCCGTTTTTATCGGGGGAGCCATCGGATCG-CTG- 48
BSNT_01648___ 49 CTCCGATACGGATTAAACTTATGGATACACACCGGTCAGTTCCCGGCGGC 98
||.||.||||.|.|.|| || |.|.|||||||
BL02844___yhd 49 CTGCGCTACGCAGTCAA------------------TC--TGCTCGGCGGC 78
BSNT_01648___ 99 AACC------------TGGC---------TGGAAAATGCGGCAGGCAGCC 127
||| |||| |.|||||..||.|.||.||||
BL02844___yhd 79 -ACCGCCGTTTTTCCTTGGCCGACTTTTATTGAAAACACGTCCGGAAGCC 127
BSNT_01648___ 128 TTCTATTAGGCATTTTGACCGGATTTTTTATGATCG----GGGCAAAACG 173
||||..|.|||.|||||||.||.|||||| .|| ||||||||..
BL02844___yhd 128 TTCTGCTCGGCCTTTTGACAGGCTTTTTT----GCGGCTCGGGCAAAAAA 173
BSNT_01648___ 174 GCCTCTGCT-GTCGGCTTTT--TTAGGCACCGGCTTTTGCGGAGGCTTCA 220
||| ||| |||...||.| |||||.||.||.||||||||.||.|..|
BL02844___yhd 174 GCC---GCTCGTCCAATTATGCTTAGGGACGGGGTTTTGCGGCGGGTATA 220
BSNT_01648___ 221 CAACAATGTCCACGTTTTCTAAGGAAACGGTGATGCTTTTGCAA--GGAC 268
|.|||||||||.|.||||||||.|||||.||..|.||..||||| || |
BL02844___yhd 221 CGACAATGTCCGCTTTTTCTAAAGAAACCGTACTTCTGCTGCAATCGG-C 269
BSNT_01648___ 269 AACCCTCATTG--GCTCTTTTATATG-TGGCA------GCCTCATTGATA 309
..|.|.|||.| |.|| |.||..|| ||||| ||||
BL02844___yhd 270 CGCTCACATCGGAGTTC-TGTACTTGATGGCATCGCTTGCCT-------- 310
BSNT_01648___ 310 TCAGGGATCATATTTGCACTGATTGGTGTTTTTGCGGGA-------CGGC 352
.|.||| || ||.||.|..|||||| |||| ||||
BL02844___yhd 311 GCGGGG----TA-------TGCTTCGCATTTTTG-GGGATCGTGATCGGC 348
BSNT_01648___ 353 GCATAGCAGGCATTCAGC------------AAAG-AAAGGGGCTGCAGGA 389
..|.|| .||||| |||| |||||.||.|.|..|
BL02844___yhd 349 AAAAAG------GTCAGCGGAGCTGCGGGGAAAGAAAAGGAGCGGTATCA 392
BSNT_01648___ 390 AAGATGA 396
|..||||
BL02844___yhd 393 ATCATGA 399
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