Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01659 and BL02840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_01659___nhaC.1.5803.seq
# -bsequence dna-align/BL02840___nhaC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01659___nhaC-BL02840___nhaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01659___nhaC-BL02840___nhaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01659___nhaC
# 2: BL02840___nhaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1450
# Identity: 966/1450 (66.6%)
# Similarity: 966/1450 (66.6%)
# Gaps: 179/1450 (12.3%)
# Score: 2858.0
#
#
#=======================================
BSNT_01659___ 1 TTGGATTCTCAAA--AAAAGCTGA----CGTTTCCGTTAGCCGTCGG-TT 43
||.||||| ||||.| || |||||.|..|| |||| |.
BL02840___nha 1 -----TTGTCAAACGAAAAAC-GACTATCGTTTTCCATA----TCGGCTC 40
BSNT_01659___ 44 TATT-TATATTG--ATGTTATGCATTATTATTT---CTTGCTTATTCTTG 87
|||| |.|||.| ||.||.| ||||||||| |.|||||||||.|.
BL02840___nha 41 TATTGTTTATGGCCATATTGT---TTATTATTTTCACCTGCTTATTCATA 87
BSNT_01659___ 88 CTTCATGTAGAACCTCATATCCCGCTGTT--TTTAAGT--GTTGTCAT-- 131
.||.|.|.||||||.||.||.|||||.|| |||..|| |||.| |
BL02840___nha 88 TTTAAAGCAGAACCGCACATACCGCTTTTGATTTGCGTCGGTTTT--TTG 135
BSNT_01659___ 132 ---GCTTTCAGCAGCAGCTTTATGGTTTGGATTTTCCTGGAAGAG-TATT 177
|||.||.|| || |.|..|.|| |.| |||.||||| || |.||
BL02840___nha 136 GCCGCTGTCGGC-GC-GGTGAAAGG---GCA--TTCTTGGAA-AGATCTT 177
BSNT_01659___ 178 GAAAAAGGGATTGTAGACGGGATCAAAAACGGCGTACAGCCAATTATTGT 227
||.|..||.|||||....||.|||..|||.|||||.|||||.||.||..|
BL02840___nha 178 GAGAGCGGCATTGTCTCAGGCATCCGAAATGGCGTTCAGCCGATCATCAT 227
BSNT_01659___ 228 TC-TAGCGCTGATCGGCATCTTAATCGGCGCCTGGATGTACAGCGGCGCA 276
.| |.|| ||.|||||||||||||||||.|.||||..||||||||||||.
BL02840___nha 228 CCTTTGC-CTAATCGGCATCTTAATCGGAGTCTGGGAGTACAGCGGCGCG 276
BSNT_01659___ 277 ATACCGACTGTGACAGTTTATGCCCT--ATCCTTTATTGAACCAAGC--C 322
||.|||||.||.||.|||||.||..| ||| |.|||||||| || |
BL02840___nha 277 ATTCCGACGGTAACGGTTTACGCGTTGAATC--TGATTGAACC--GCAGC 322
BSNT_01659___ 323 ACCTTCTGTTGACTGCTTTGTTTTCA--TGTATGATCATCAGCACACTTG 370
||||.|||.|.||.|| ..|||||| |||.|..|.|||||..||.|.|
BL02840___nha 323 ACCTGCTGCTCACCGC--ACTTTTCAGCTGTCTTGTGATCAGTTCATTGG 370
BSNT_01659___ 371 TTGGCTCAAGCCTGACAACTGTAAGCACAATCGGGGTAGCGCTGATCGGC 420
|.|||||.|||.|.||.||.||.|||||.|||||.||.||.||.|||||.
BL02840___nha 371 TCGGCTCCAGCTTTACGACGGTCAGCACGATCGGCGTCGCCCTCATCGGT 420
BSNT_01659___ 421 GTATCGAGC-GCGGCTAGCGTTCCGCTTGA-ATGGACAGCAGGCGCAGTC 468
||..| .|| |||||..|||||||.| ||| ||||.|.||.||.||.||.
BL02840___nha 421 GTGGC-CGCGGCGGCAGGCGTTCCAC-TGACATGGGCGGCGGGAGCCGTG 468
BSNT_01659___ 469 ATATGCGGCGCTTGTTTTGGGGATAAAATGTCGCCGATGTCGGACACAAC 518
||.||||||||.||.||.||.||.||||||||.||.|||||.|||||.||
BL02840___nha 469 ATTTGCGGCGCCTGCTTCGGCGACAAAATGTCTCCAATGTCAGACACGAC 518
BSNT_01659___ 519 CAACTTTGCAGCCGGAATAGGCGAAATACCGATCTTTGAA-CACATTCGC 567
|||||||||.||.|||.|.||.||..|.||||| |||.|| ||.||..|.
BL02840___nha 519 CAACTTTGCCGCAGGAGTCGGGGAGCTTCCGAT-TTTCAAGCATATCAGA 567
BSNT_01659___ 568 CATATGATGGGCACAACCATTCCAGCTTTGCTCATCACTGTCG-TTCTGT 616
||||||..|||.||.||.||.||.|||.|..|.|||| || ||.||.
BL02840___nha 568 CATATGGCGGGAACGACGATCCCCGCTCTTTTGATCA----CGATTTTGC 613
BSNT_01659___ 617 TTTACTTTCT------CGGTTCATCAGTGTCAGCGG-ACGCTGCTTCAAC 659
|||.||||.| |.||||.| |..|.|||| || |.||||||||
BL02840___nha 614 TTTTCTTTTTCATGGGCCGTTCTT---TAACGGCGGCAC-CGGCTTCAAC 659
BSNT_01659___ 660 CGAGAATATTC-AGCAGGTCATAACCGGAATAAAAG--ATGCCGCAAACG 706
|||.||.|||| ||| |.||||||.|||||||.||| ||| |..|||.
BL02840___nha 660 CGAAAACATTCAAGC-GATCATAAACGGAATAGAAGGCATG--GTCAACA 706
BSNT_01659___ 707 TGACACCGTGGGCC------CTTCTTTCTCCGCT-CTTAGTCGTT----T 745
| ||.||| | |||||.||.||.|| ||| ||..|| |
BL02840___nha 707 T--CAGCGT----CTTCACGCTTCTGTCGCCTCTGCTT-GTGATTGTACT 749
BSNT_01659___ 746 TGCTGGCAATAAAACGGGTATCAGTAATCCC--CGTTCTGACTGCCGGAA 793
||||| |.|.||||....|.||.||.|| || ||..|.||.||.|
BL02840___nha 750 TGCTG----TCAGACGGACGCCCGTCATTCCGTCG--CTTGCAGCAGGGA 793
BSNT_01659___ 794 TTATTTCCTCGGGAATTTTGACTGCTATTTTTGTACCCGACAGCAGCCT- 842
|..|||||.|.||||||||..|.||..|..|| ||||||
BL02840___nha 794 TCGTTTCCGCCGGAATTTTTGCCGCGCTGATT-----------CAGCCTG 832
BSNT_01659___ 843 --GCAGG--------CGTTTATGACAGCTTTACAAAATGGCACAACTTTC 882
||.|| |||||.||.||||..|.||.||||||.|...||||
BL02840___nha 833 ACGCCGGCATTTCATCGTTTTTGTCAGCGATGCAGAATGGCCCGGTTTTC 882
BSNT_01659___ 883 GAAACTGACAATGAGGCAGCCGCT---AAAATTATTAACAGAGGCGGACT 929
..|.|.||.|.||| |||||.| ||.|||.|.||..|.|||||.||
BL02840___nha 883 TCAGCCGATACTGA---AGCCGTTGAAAAGATTTTAAATCGCGGCGGCCT 929
BSNT_01659___ 930 GCAATCCATGATGGGCTCTGTCTCTCTCATTATGATTGCTTTTGCACTCG 979
.|||||.||||||||||||||.||||||||.||.||.||.||.||.||||
BL02840___nha 930 TCAATCGATGATGGGCTCTGTTTCTCTCATCATCATCGCATTCGCGCTCG 979
BSNT_01659___ 980 GCGGATTGATGGAGAAAATCGGATTGATT-----TCTGCACTATTGGAAG 1024
||||..|.|||||.||.|||||..||||| .|||| |.||||
BL02840___nha 980 GCGGTCTCATGGAAAAGATCGGCATGATTACAAGCCTGC-----TTGAAG 1024
BSNT_01659___ 1025 GCGTCATGAAAGGCATCCGCTCA----AAAGGCCGTCTTGT-TGCAGCAA 1069
||||.||.||.||||| ||| ||||||||.||||| |.| .|||
BL02840___nha 1025 GCGTAATCAAGGGCAT----TCATACGAAAGGCCGGCTTGTGTTC-TCAA 1069
BSNT_01659___ 1070 CTGTCTGCTCAAGCATCGGCGTCAACTTGGCAACGGGCGAACAGTATTTA 1119
|.||.|..||||||||||||.|.|||.||||.||.||.||||||||||||
BL02840___nha 1070 CCGTTTCATCAAGCATCGGCATGAACCTGGCGACAGGAGAACAGTATTTA 1119
BSNT_01659___ 1120 TCGATATTAATACCGGGACAATCATTTAAATCTTTATATGACAAAC---G 1166
|||||.||.||.||.||.||.||.||||||....|.||||||||.| |
BL02840___nha 1120 TCGATCTTGATTCCCGGTCAGTCCTTTAAAAAGCTGTATGACAAGCTTGG 1169
BSNT_01659___ 1167 AAACATCCAGCGAAA--ATTTCTGACAAGATCATTAGAGGACGGCGGAAC 1214
| |||.|.||.|| ||| ||.|.||||||.|.||.|||||.||.||
BL02840___nha 1170 A---ATCGACCGGAAGCATT--TGTCGAGATCACTTGAAGACGGAGGGAC 1214
BSNT_01659___ 1215 ATTAATTAACCCATTGATTCCTTGGGGCGTCAGCGGCGCATTTATGGCGA 1264
|||||||||.||..||||.||.|||||.|||||||||||.||.|||.|.|
BL02840___nha 1215 ATTAATTAATCCGATGATCCCATGGGGAGTCAGCGGCGCGTTCATGTCCA 1264
BSNT_01659___ 1265 GCGCACTTGGTGTTCCAGTCATAGACTACATCCCGTTTACGTTCTTCCTC 1314
..||.||.||.|||||.|||||.||.||..|.||||||..|||.|||||.
BL02840___nha 1265 CAGCGCTCGGCGTTCCCGTCATTGAATATTTGCCGTTTGTGTTTTTCCTT 1314
BSNT_01659___ 1315 TATATATCGCCAATGATCTCCATTTTGATTGGATTT--GTTAAAAAATAA 1362
|||.|||||||..|..|.||.|||||| ||.|.||| | .||||||
BL02840___nha 1315 TATTTATCGCCGCTCTTTTCGATTTTG-TTCGGTTTCCG----CAAATAA 1359
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