Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05943 and BL02833
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence dna-align/BSNT_05943___msmX.1.5803.seq
# -bsequence dna-align/BL02833___msmX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05943___msmX-BL02833___msmX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05943___msmX-BL02833___msmX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05943___msmX
# 2: BL02833___msmX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity: 807/1151 (70.1%)
# Similarity: 807/1151 (70.1%)
# Gaps: 97/1151 ( 8.4%)
# Score: 2789.5
#
#
#=======================================
BSNT_05943___ 1 ATGGCTGAATTGCG-GATGGAGCACATTTATAAATTTTATGATCAGAAGG 49
|||||.|||.| || |.|.||.|..||.||.|||.|.|||||..|.||.|
BL02833___msm 1 ATGGCGGAACT-CGTGCTCGATCGGATATACAAAGTGTATGACAACAAAG 49
BSNT_05943___ 50 AACCGGCGGTTGATGACTTTAACCTTCATATTGCCGATAAGGAATTTATC 99
...||||.||.|||.|.|||||.||||||||.|..|||||||||||||||
BL02833___msm 50 TTACGGCTGTGGATAATTTTAATCTTCATATCGAGGATAAGGAATTTATC 99
BSNT_05943___ 100 GTATTCGTCGGCCCGTCCGGCTGCGGGAAATCAACGACGCTGCGAATGGT 149
||.||.|||||.|||||.||||||||.||.||.||.|||||..|||||.|
BL02833___msm 100 GTCTTTGTCGGACCGTCAGGCTGCGGCAAGTCGACAACGCTCAGAATGAT 149
BSNT_05943___ 150 CGCAGGACTTGAAGAAATTTCGAAAGGCGATTTTTATATTGAAGGAAAAC 199
||||||.|||||.||||||.||.|.|||||.||....||.||.||.||||
BL02833___msm 150 CGCAGGCCTTGAGGAAATTACGGATGGCGAATTCACAATCGACGGCAAAC 199
BSNT_05943___ 200 GGGTCAATGATGTAGCGCCAAAGGACAGGGATATCGCGATGGTATTTCAG 249
||.|.||||||||.||.||.||.|||.|.||.||.|||||||||||.||.
BL02833___msm 200 GGATGAATGATGTCGCTCCTAAAGACCGCGACATTGCGATGGTATTCCAA 249
BSNT_05943___ 250 AACTACGCGCTCTATCCGCATATGACGGTCTACGATAATATCGCGTTCGG 299
|||||.||.||.||||||||.||||..|||||.||.|||||.||.|||||
BL02833___msm 250 AACTATGCCCTGTATCCGCACATGAACGTCTATGACAATATGGCTTTCGG 299
BSNT_05943___ 300 GCTCAAGCTTCGGAAAATGCCGAAGCCTGAAATCAAAAAAAGAGTAGAGG 349
..|.|||||.|||||..|.||||||..||||||||||....|.||..|.|
BL02833___msm 300 CTTGAAGCTGCGGAAGTTTCCGAAGGATGAAATCAAACGGCGTGTCCATG 349
BSNT_05943___ 350 AAGCTGCTAAAATTCTCGGGCTGGAGGAATATTTGCACCGTAAACCGAAA 399
||||.||.||||||||.||.||.||..||||||||.|..|.||.||.|||
BL02833___msm 350 AAGCGGCCAAAATTCTGGGCCTTGAACAATATTTGGATAGAAAGCCAAAA 399
BSNT_05943___ 400 GCGCTGTCAGGCGGACAGAGACAGCGGGTTGCGCTGGGCCGGGCAATCGT 449
|||||.||.|||||||||.|.|||||.||.||..|.|||||||||||.||
BL02833___msm 400 GCGCTTTCCGGCGGACAGCGCCAGCGCGTCGCCTTAGGCCGGGCAATTGT 449
BSNT_05943___ 450 GCGGGATGCAAAGGTGTTCCTGATGGATGAGCCTTTGTCAAACCTGGACG 499
.||||||||||||||||||.|||||||||||||..|.||||||||.||.|
BL02833___msm 450 TCGGGATGCAAAGGTGTTCTTGATGGATGAGCCGCTATCAAACCTTGATG 499
BSNT_05943___ 500 CGAAGCTGAGGGTGCAAATGCGGGCGGAAATCATTAAGCTCCACCAGAGA 549
|.||..||.|.||.||||||||.||||||||||..|||||.||.|||.|.
BL02833___msm 500 CCAAATTGCGCGTACAAATGCGCGCGGAAATCACAAAGCTTCATCAGCGT 549
BSNT_05943___ 550 CTGCAGACTACAACGATTTATGTGACGCATGACCAGACAGAAGCGCTGAC 599
||||||||.||.||.||.|||||.||.||.||||||||.||||||.||||
BL02833___msm 550 CTGCAGACGACGACCATCTATGTCACCCACGACCAGACGGAAGCGATGAC 599
BSNT_05943___ 600 AATGGCGACACGGATTGTAGTCATGAAAGATGGGAAAATTCAGCAGATCG 649
.|||||.||.|||.|.||.|||||||||||.||.|..||.||||||.|||
BL02833___msm 600 GATGGCTACGCGGCTCGTCGTCATGAAAGACGGAATCATCCAGCAGGTCG 649
BSNT_05943___ 650 GGACGCCGAAGGATGTATATGAATTCCCTGAAAACGTCTTTGTCGGCGGG 699
||.||||||||||.||.||.|||...||.||||||||.|||||||||||.
BL02833___msm 650 GGGCGCCGAAGGAAGTCTACGAAAATCCGGAAAACGTGTTTGTCGGCGGC 699
BSNT_05943___ 700 TTTATCGGATCACCAGCGATGAACTTTTTCAAAGG----------GAAGC 739
||||||||.||.||.||.||||||||.||.|..|| ||||
BL02833___msm 700 TTTATCGGGTCTCCTGCAATGAACTTCTTTACCGGCACTCTGAAAGAAG- 748
BSNT_05943___ 740 TCACG---------GATGGC-TTAATCAAAATCGGTTCTGCGGCATTAAC 779
.||.| ||.||| || ||||||| .
BL02833___msm 749 ACATGTTTACATTCGACGGCGTT--------TCGGTTC-----------G 779
BSNT_05943___ 780 CGTCCCGGAAGGAAAAATGAAAGTGCTGCGTGAAAAAGGCTACATCGGCA 829
|||.||||||||||||||||||||.|||||.|...|.||.||..||||||
BL02833___msm 780 CGTGCCGGAAGGAAAAATGAAAGTTCTGCGCGGCCAGGGTTATGTCGGCA 829
BSNT_05943___ 830 AAGAGGTCATCTTCGGCATCCGTCCTGAGGATATACATGATGAA-TTGAT 878
|.||..|||||.|.||.|||.|.|||||.|||||.||||||||| .|| |
BL02833___msm 830 AGGAAATCATCATGGGAATCAGGCCTGAAGATATCCATGATGAACCTG-T 878
BSNT_05943___ 879 TGTCGTGGAATCAT-ATAAGAACTC----TTCGATTAAGGCCAAAATCAA 923
|.||.|.|||.|.| |.||| |||| .||||| ||.|||||..|
BL02833___msm 879 TTTCATTGAAGCGTCAAAAG-ACTCGAAAGTCGAT----GCGAAAATTGA 923
BSNT_05943___ 924 TGTTGCAGAGCTGCTCGGTTCTGAAATCATGATTTATTCGCAGATCGACA 973
.||.||.||||||.|.||..|.||||..|||.|||||||||||..||.|
BL02833___msm 924 GGTAGCCGAGCTGATGGGCGCGGAAACGATGCTTTATTCGCAGGCCGGC- 972
BSNT_05943___ 974 ACCAAGAC-TTTATTGCGC--------------GGATCGACGCCCGCCTC 1008
||..||.| ||||| ||| |||.|||||
BL02833___msm 973 ACTCAGCCGTTTAT--CGCCAGAGTCGATTCAAGGACCGACG-------- 1012
BSNT_05943___ 1009 GATATTCAATCGGGCGAT--GAGCTGACGGTCGCATTTGATATGAATAAA 1056
||||..|.|||||| ||....||.|.||| ||||.|||||||||
BL02833___msm 1013 ----TTCAGGCCGGCGATACGATTCCACTGGCGC--TTGACATGAATAAA 1056
BSNT_05943___ 1057 GGTCATTTCTTTGACAGTGAGACAGAAGTGAGAATCC---------GATA 1097
|.|||.||.|||||.|..||.||.||..|..|.|||| ||||
BL02833___msm 1057 GCTCACTTTTTTGATAAAGAAACGGAGCTCCGCATCCGCTCTGAAGGATA 1106
BSNT_05943___ 1098 A 1098
|
BL02833___msm 1107 A 1107
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