Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00738 and BL02820

See Amino acid alignment / Visit BSNT_00738 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:22
# Commandline: needle
#    -asequence dna-align/BSNT_00738___ydaH.1.5803.seq
#    -bsequence dna-align/BL02820___ydaH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00738___ydaH-BL02820___ydaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00738___ydaH-BL02820___ydaH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00738___ydaH
# 2: BL02820___ydaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 848
# Identity:     571/848 (67.3%)
# Similarity:   571/848 (67.3%)
# Gaps:          76/848 ( 9.0%)
# Score: 1853.5
# 
#
#=======================================

BSNT_00738___      1 GTGCAT-GTCATTACAACA--CAA-GTACTTTTTATTTTTTGTTTTTTAT     46
                         || |.|.||..||||  ||| ||.||.||.||||||||||||.|.|
BL02820___yda      1 ----ATGGACTTTTTAACATCCAAGGTGCTATTGATTTTTTGTTTTCTGT     46

BSNT_00738___     47 TGCTGATTCACTCGATAGAAACCTTAGCCTATGCTACAAGGCTTTCCGGG     96
                     ||.||||.||.||.||.|||||..|.||.||.|||.|..||||.||.||.
BL02820___yda     47 TGTTGATCCATTCCATCGAAACGCTCGCTTACGCTGCCCGGCTGTCAGGC     96

BSNT_00738___     97 GCCCGCGTTGGATTTATTGCGTCCGCGCTTTCCCTGTTTAATGTCATGGT    146
                     ||..|.||.||||||||.||.||.||.||.||..|.||||||||.|||||
BL02820___yda     97 GCGAGAGTCGGATTTATCGCATCGGCTCTGTCATTATTTAATGTGATGGT    146

BSNT_00738___    147 CATCGTGTCCAGAATGTCGAACATGGTGCAGCAGCCCTTTACCGGGCATT    196
                     ||||||.||.||||||||.||||||||.||||||||..|.||.||..|..
BL02820___yda    147 CATCGTCTCGAGAATGTCAAACATGGTTCAGCAGCCTGTGACGGGAAAGC    196

BSNT_00738___    197 TAATTGATGATGCTGGAAAAAACGCACTGGCGATT----------GTAGG    236
                     |..||||||..||.||      .||....|||.||          |||| 
BL02820___yda    197 TTGTTGATGTCGCGGG------GGCGGATGCGCTTTCCCTCGTCGGTAG-    239

BSNT_00738___    237 GGACCAGTTCCGCTTTTTAATTTTCGGATCGACAGTCGGCACCATTTTGG    286
                        |||.||.||.|||||.||.||.||.||.||.||||||||.|||||.|
BL02820___yda    240 ---CCAATTTCGGTTTTTGATCTTTGGTTCAACCGTCGGCACAATTTTCG    286

BSNT_00738___    287 GCATTATCCTGCTCCCGTCTTTTGTCGCTCTTTTTTCACGGGCGATTATT    336
                     |.||..|.||.||.|||.|.||.|||||..|.|||||..|.||||||.||
BL02820___yda    287 GAATGCTGCTTCTGCCGACATTCGTCGCCGTATTTTCGAGAGCGATTGTT    336

BSNT_00738___    337 CACTTGGCGGGCGGCGGCGGCTCCGTTTTTCAAGTTTTCCGAAAGGGGTT    386
                     ||.|||||.||.|.....|||||||||||.|||||.||.||.||||.|||
BL02820___yda    337 CATTTGGCAGGAGAAAATGGCTCCGTTTTGCAAGTGTTTCGCAAGGCGTT    386

BSNT_00738___    387 CTCGAAA--------CAAGGATTCAAAAATGCCCTTTCCTATT-TGC---    424
                     .||.|||        ||||.||.||||   ||        ||| |||   
BL02820___yda    387 TTCAAAAAATAGCTTCAAGCATGCAAA---GC--------ATTATGCAAA    425

BSNT_00738___    425 --------GTCTGCCGTCTATTTCATATGTAAAAGGATTTCATATGCGCT    466
                             |.|||         ..||||||.||||..||||...|.||||
BL02820___yda    426 AAGACCGAGCCTG---------GAATATGTGAAAGACTTTCGGTTCCGCT    466

BSNT_00738___    467 TGATTCCGAAGCGTTTGTTTGTCATCAACATGCTGATCACATCGATTTAT    516
                     ..||.|||||.||..||||||||.|.||||||.|.||.||..||||||||
BL02820___yda    467 ATATACCGAAACGGCTGTTTGTCTTGAACATGGTCATTACGGCGATTTAT    516

BSNT_00738___    517 ACGATTGGCGTGCTTTCGGCTTTATACGCAGG---CCTTCTGGCTCCGGA    563
                     ||.||.|||||.|||.|.|||.|.||.||.||   ||||.||  .|||.|
BL02820___yda    517 ACAATCGGCGTTCTTGCCGCTCTTTATGCGGGCGTCCTTGTG--CCCGAA    564

BSNT_00738___    564 GCGCAGTACGACAGCCGTCATGGCTTCGGGTTTAATCAACGGAATTGCGA    613
                     ..||| ||||||.||.||.|||||.||.||..|..|||||||..||||||
BL02820___yda    565 AGGCA-TACGACCGCGGTGATGGCCTCCGGCCTTGTCAACGGGGTTGCGA    613

BSNT_00738___    614 CGATGCTACTGGCCATTTTTGTTGATCCTAAGGTATCCGTTCTAGCTGAT    663
                     |||||||.||.||..|.|||||.|||||.|||||.||.||.||.||.|||
BL02820___yda    614 CGATGCTGCTCGCGCTGTTTGTCGATCCAAAGGTGTCGGTACTTGCAGAT    663

BSNT_00738___    664 GATGTGGCAAAAGGAAAACGAAGCTATATCTATTTAAAATGGACCTCTGT    713
                     ||.||.||||||||.||.||.|||||||..|||||.||||||.|.||..|
BL02820___yda    664 GACGTAGCAAAAGGGAAGCGGAGCTATACGTATTTGAAATGGGCTTCGAT    713

BSNT_00738___    714 CACAATGGTCA-CATCAAGGGTGGCGGGCACACTCCTCGCCCAGCTCATG    762
                     |||||||| || ||||.||||||||.||.||..|..|.|||||..|..|.
BL02820___yda    714 CACAATGG-CAGCATCGAGGGTGGCCGGGACGATTTTTGCCCAAGTACTA    762

BSNT_00738___    763 TTTATTCCGGGGGCCTACTATATCGCGTGGCTGACAAAGTGGTTTTAA    810
                     ||||||||.|...|.|||||||||||.|||.||||.||||||.|.||.
BL02820___yda    763 TTTATTCCCGCTTCTTACTATATCGCATGGATGACGAAGTGGATGTAG    810


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00738 and BL02820

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
