Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00719 and BL02812
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_00719___ycsK.1.5803.seq
# -bsequence dna-align/BL02812___ycsK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00719___ycsK-BL02812___ycsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00719___ycsK-BL02812___ycsK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00719___ycsK
# 2: BL02812___ycsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 737
# Identity: 409/737 (55.5%)
# Similarity: 409/737 (55.5%)
# Gaps: 193/737 (26.2%)
# Score: 1017.5
#
#
#=======================================
BSNT_00719___ 1 ATGATGCTTCGATATACAGCTCTGGGCGATTCCTTGA-CGACAGGGAGAG 49
||||.|||||.||||||.|||||.|||||.||.||.| ||.|.|||
BL02812___ycs 1 ATGACGCTTCAATATACGGCTCTCGGCGACTCTTTAACCGTCGGGG---- 46
BSNT_00719___ 50 GCTCCGGGC-----TGTTTTCACCCGGCTTCGTCCAGCGTTTT--GGGGA 92
||.|.|| |||||...||.||.||.||.|||||.|.| ..|||
BL02812___ycs 47 --TCGGTGCAGGTTTGTTTGAGCCGGGATTTGTACAGCGCTATAAAAGGA 94
BSNT_00719___ 93 CATGATGGAAGCTGACTTGAA--AACAA--------GAACGGCAATAAAC 132
.| |||||||..||.||||| ||.|| ||..|
BL02812___ycs 95 AA--ATGGAAGAGGATTTGAACGAAGAAGTTTCTTTGATTG--------- 133
BSNT_00719___ 133 ATATTTGCCAGATCAGGTCTGAATACAGAAGAGATTTT-GGGA--CT--- 176
|||||||.|.|||.|||||..|.||....||.||||| |.|| ||
BL02812___ycs 134 -TATTTGCGAAATCCGGTCTTGAGACGTCGGAAATTTTAGCGATGCTGAA 182
BSNT_00719___ 177 ----CCTGTCATATCCCT-----ATGTGCAAAAATGTATTCGAGATGCTG 217
|||.|||| |.| |.||..||||| ||.|
BL02812___ycs 183 CGAGCCTTTCAT---CATGGAACAGGTCAAAAAA------------GCGG 217
BSNT_00719___ 218 ATATGATAACGATCACAGGGTGCGGAAACGATCT-----CATCGATTCGG 262
|..|.||.|||||.||.||.||||||||.||||| .||||.| ||
BL02812___ycs 218 ACGTCATCACGATAACGGGCTGCGGAAATGATCTTCTGCAATCGCT--GG 265
BSNT_00719___ 263 TCTTAGCCTACCAAACCTCTAAGGATGAA-ACG-ATTTTCAGCCGTGTA- 309
...|| ||..|||.....||||||||| ||| .|||| ||.|
BL02812___ycs 266 AGATA---TATGAAAAAGAAAAGGATGAACACGTCTTTT------TGGAA 306
BSNT_00719___ 310 ---TCCGCCCATTGCCATGAGAATT------------TTGAAAAGATGAT 344
|||.||||.||.||..|.||.| ||||.|||||
BL02812___ycs 307 GCTTCCTCCCACTGTCAGAAAAACTACTCAGGCATGCTTGAGAAGAT--- 353
BSNT_00719___ 345 TGCCAAAGTCGCCGAGATTAAAGGAGAAAATCCTTC-------CCCGTAC 387
||.| ||.||.||.||||||||...|.| |.|||.|
BL02812___ycs 354 ---CAGA------GAAATAAAGGGAGAAAAAGATACGCGTTATCTCGTCC 394
BSNT_00719___ 388 GCCATTCGTGTGTTCAACTTATACAATCCGTTTCCCGAAATTGATATCGC 437
|.| ||| ||||.||||||||.||.|||||...|||.||..|.||
BL02812___ycs 395 GGC-TTC------TCAATTTATACAACCCATTTCCGTCAATCGAATTAGC 437
BSNT_00719___ 438 CGGCAAATGGATCACTTC---GTTTAATTCA--CATTTAGAAACA-CTTG 481
.|.||||||||| ||| .||||| || ||.||| ||.|| ||.|
BL02812___ycs 438 GGACAAATGGAT---TTCCGGCTTTAA--CAGGCACTTA-AAGCAGCTAG 481
BSNT_00719___ 482 CATCAGCACCCCATGTCAA---AATCGCGGATGCCTATAGC-ATCTTCAA 527
..||.||.||.||..|||| .||| |||.|.||| || .||||.||
BL02812___ycs 482 AGTCCGCTCCGCAAATCAAGGTGATC---GATACTTAT-GCTGTCTTTAA 527
BSNT_00719___ 528 AGGCAAAGAACAGGAATATCTGTCCTTTGACGGTGTCCATCCGAACAGCA 577
|||....|||.|.||||||.||||..|||||.||||.|||||.|.|||||
BL02812___ycs 528 AGGACGCGAAAAAGAATATTTGTCAATTGACCGTGTGCATCCAAGCAGCA 577
BSNT_00719___ 578 AAGGCTATCAAGCGATG--------GCTGA-AGCCGTTCACAAGCTA--- 615
.|||.|||.|||||||| ||||| |||.| |..||||
BL02812___ycs 578 GAGGGTATGAAGCGATGTCGGAAAAGCTGAGAGCGG----CGGGCTACGG 623
BSNT_00719___ 616 ----------GGCTATAAAGAATTATCAGTTTCATAG 642
|||| ||
BL02812___ycs 624 GCGGCTGGAGGGCT-----GA---------------- 639
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