Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00717 and BL02811
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_00717___kipR.1.5803.seq
# -bsequence dna-align/BL02811___kipR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00717___kipR-BL02811___kipR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00717___kipR-BL02811___kipR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00717___kipR
# 2: BL02811___kipR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 804
# Identity: 527/804 (65.5%)
# Similarity: 527/804 (65.5%)
# Gaps: 105/804 (13.1%)
# Score: 1666.5
#
#
#=======================================
BSNT_00717___ 1 ATGCAGAATAAAAATAAAACCGTAGTCAAATCTATGGCGCTGCTTAATTT 50
|||.|..|||||||.|||||.||.||||||.|.|||.|.|||||.|||.|
BL02811___kip 1 ATGGAACATAAAAACAAAACAGTCGTCAAAGCCATGACCCTGCTCAATCT 50
BSNT_00717___ 51 GTTTTTGCATAAACCAAGCCTAACCTTAAGTGAA---------CTGG--- 88
||| |||.|| .||.||| ||||
BL02811___kip 51 GTT---------------CCTGAC---GAGAGAAAGGCTCTCGCTGGGCG 82
BSNT_00717___ 89 -------TGTCGCTGACGGGAATGCCGAAGACCTCTGTTCACCGGATGGT 131
|| .||||||.||.||||||||.||.|||||..||||.|||||
BL02811___kip 83 ACATGATTG-AGCTGACAGGCATGCCGAAAACATCTGTCTACCGCATGGT 131
BSNT_00717___ 132 CAGCTCCTTGGAGGAAATGGGGTTCCTC----------AG-TCGGGATGC 170
..|.||..|.||.||||||||.||.||| || .|||||||.
BL02811___kip 132 TTGTTCTCTCGAAGAAATGGGTTTTCTCGACCGCGACGAGAACGGGATGT 181
BSNT_00717___ 171 GTCCGGCGCTTATTCGCTGGGATTGGTGTTTTTGGAATTCGGACAGCTTG 220
.| .||||| |||.||.||||||||.|||.|||.||.||||
BL02811___kip 182 AT----AGCTTA-------GGACTGCTGTTTTTGCAATACGGCCACCTTG 220
BSNT_00717___ 221 TCGCTGACAGGCTGGATATCAGAAAAATAGCGAAACCGGTGATGGAAGAG 270
|..|.||.|||||.|||||..|||||||.||....||..|.||||||||.
BL02811___kip 221 TTTCAGAAAGGCTTGATATTCGAAAAATCGCTCTGCCCATCATGGAAGAA 270
BSNT_00717___ 271 CTGTGCCGGGAAGTGGATGAGGCCGTGCAGTTGATCATGAGGGACGGCAA 320
||..||...||.||||||||.|||||.||.||.||..|.|||.|.||.||
BL02811___kip 271 CTCCGCGATGACGTGGATGAAGCCGTCCATTTAATTGTAAGGCAGGGAAA 320
BSNT_00717___ 321 TGAAGCGATATACGTTGAGAAAATAGAAGGGACACAGACTGTGCGGCTGT 370
||||||.||.||..|.||.|||||.||.||.||.|||||.||.||.||.|
BL02811___kip 321 TGAAGCAATGTATATAGAAAAAATTGAGGGCACGCAGACCGTTCGCCTCT 370
BSNT_00717___ 371 ATACGGCGATCGGCAGGCGTTCCCCCCTATACGCGGGAGCGTGCGCCAGA 420
||||.||||||||.|||||.|||||..||||.||.|||||.||.||.|||
BL02811___kip 371 ATACAGCGATCGGGAGGCGGTCCCCTTTATATGCCGGAGCCTGTGCGAGA 420
BSNT_00717___ 421 AGCATTCTGTCCTTTCTTCCCCGTGAAGA-AATC--GAAGCATACATCAA 467
|||||||||.|.|||.|.|| |||||| .|.| ||.||.||.|||.|
BL02811___kip 421 AGCATTCTGACGTTTTTGCC---TGAAGAGGAGCGGGATGCCTATATCGA 467
BSNT_00717___ 468 ACAAACCGAGCTCATTTCGATTGGCTCCGGAACGATTACCGATCCCGAAA 517
.|||||.|||||..|..||||.|..|||||.||||| |||..|
BL02811___kip 468 GCAAACAGAGCTGGTGCCGATCGCTTCCGGCACGAT--------CCGGGA 509
BSNT_00717___ 518 AACTGCTTCAGGAGATTGATGCCTC--TGTG------------CAAAATG 553
.|..||| ||| .|||| ||.| |||| |..|..|
BL02811___kip 510 CAAGGCT----GAG-CTGAT-CCGCATTGTGGACGAGTCGTACCGGAGCG 553
BSNT_00717___ 554 GCTATACTGTCAGCTATTCAGAGCTCGAAAACTATACGGCGGCGATCGGC 603
|||..||.|||||..||||.|||||||||.||||.||..|.|||||.|.|
BL02811___kip 554 GCTGCACGGTCAGTCATTCGGAGCTCGAAGACTACACCTCCGCGATTGCC 603
BSNT_00717___ 604 GCCCCGATCTTTAATCATAAGCGCCAAGTGGCAGCCGGCATTAGCATTGC 653
||.|||||.||.||||||||||||.||||.|||||.||.||.|||||.||
BL02811___kip 604 GCGCCGATTTTCAATCATAAGCGCGAAGTCGCAGCTGGGATCAGCATCGC 653
BSNT_00717___ 654 AGGCTTTGAAGCGAGATTTACAG-AAGACAGGCTGCCCTATTTAACAGAA 702
.||.||||||||..|.||| ||| |||||.|.||.||.|||||.||.|||
BL02811___kip 654 CGGGTTTGAAGCCCGCTTT-CAGAAAGACCGTCTTCCTTATTTGACCGAA 702
BSNT_00717___ 703 AAGGTG---AAGGACGCCGCTTTACAGATTTCAAGAAAAATAGGATATAC 749
|..||| |||| ||.|||||.|| ||.||.||||||.||||.|.|
BL02811___kip 703 AGAGTGAAAAAGG-CGGCGCTTGAC--ATCTCGAGAAAATTAGGTTTT-- 747
BSNT_00717___ 750 ATAA 753
||.
BL02811___kip 748 -TAG 750
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