Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00717 and BL02811

See Amino acid alignment / Visit BSNT_00717 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:21
# Commandline: needle
#    -asequence dna-align/BSNT_00717___kipR.1.5803.seq
#    -bsequence dna-align/BL02811___kipR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00717___kipR-BL02811___kipR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00717___kipR-BL02811___kipR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00717___kipR
# 2: BL02811___kipR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 804
# Identity:     527/804 (65.5%)
# Similarity:   527/804 (65.5%)
# Gaps:         105/804 (13.1%)
# Score: 1666.5
# 
#
#=======================================

BSNT_00717___      1 ATGCAGAATAAAAATAAAACCGTAGTCAAATCTATGGCGCTGCTTAATTT     50
                     |||.|..|||||||.|||||.||.||||||.|.|||.|.|||||.|||.|
BL02811___kip      1 ATGGAACATAAAAACAAAACAGTCGTCAAAGCCATGACCCTGCTCAATCT     50

BSNT_00717___     51 GTTTTTGCATAAACCAAGCCTAACCTTAAGTGAA---------CTGG---     88
                     |||               |||.||   .||.|||         ||||   
BL02811___kip     51 GTT---------------CCTGAC---GAGAGAAAGGCTCTCGCTGGGCG     82

BSNT_00717___     89 -------TGTCGCTGACGGGAATGCCGAAGACCTCTGTTCACCGGATGGT    131
                            || .||||||.||.||||||||.||.|||||..||||.|||||
BL02811___kip     83 ACATGATTG-AGCTGACAGGCATGCCGAAAACATCTGTCTACCGCATGGT    131

BSNT_00717___    132 CAGCTCCTTGGAGGAAATGGGGTTCCTC----------AG-TCGGGATGC    170
                     ..|.||..|.||.||||||||.||.|||          || .|||||||.
BL02811___kip    132 TTGTTCTCTCGAAGAAATGGGTTTTCTCGACCGCGACGAGAACGGGATGT    181

BSNT_00717___    171 GTCCGGCGCTTATTCGCTGGGATTGGTGTTTTTGGAATTCGGACAGCTTG    220
                     .|    .|||||       |||.||.||||||||.|||.|||.||.||||
BL02811___kip    182 AT----AGCTTA-------GGACTGCTGTTTTTGCAATACGGCCACCTTG    220

BSNT_00717___    221 TCGCTGACAGGCTGGATATCAGAAAAATAGCGAAACCGGTGATGGAAGAG    270
                     |..|.||.|||||.|||||..|||||||.||....||..|.||||||||.
BL02811___kip    221 TTTCAGAAAGGCTTGATATTCGAAAAATCGCTCTGCCCATCATGGAAGAA    270

BSNT_00717___    271 CTGTGCCGGGAAGTGGATGAGGCCGTGCAGTTGATCATGAGGGACGGCAA    320
                     ||..||...||.||||||||.|||||.||.||.||..|.|||.|.||.||
BL02811___kip    271 CTCCGCGATGACGTGGATGAAGCCGTCCATTTAATTGTAAGGCAGGGAAA    320

BSNT_00717___    321 TGAAGCGATATACGTTGAGAAAATAGAAGGGACACAGACTGTGCGGCTGT    370
                     ||||||.||.||..|.||.|||||.||.||.||.|||||.||.||.||.|
BL02811___kip    321 TGAAGCAATGTATATAGAAAAAATTGAGGGCACGCAGACCGTTCGCCTCT    370

BSNT_00717___    371 ATACGGCGATCGGCAGGCGTTCCCCCCTATACGCGGGAGCGTGCGCCAGA    420
                     ||||.||||||||.|||||.|||||..||||.||.|||||.||.||.|||
BL02811___kip    371 ATACAGCGATCGGGAGGCGGTCCCCTTTATATGCCGGAGCCTGTGCGAGA    420

BSNT_00717___    421 AGCATTCTGTCCTTTCTTCCCCGTGAAGA-AATC--GAAGCATACATCAA    467
                     |||||||||.|.|||.|.||   |||||| .|.|  ||.||.||.|||.|
BL02811___kip    421 AGCATTCTGACGTTTTTGCC---TGAAGAGGAGCGGGATGCCTATATCGA    467

BSNT_00717___    468 ACAAACCGAGCTCATTTCGATTGGCTCCGGAACGATTACCGATCCCGAAA    517
                     .|||||.|||||..|..||||.|..|||||.|||||        |||..|
BL02811___kip    468 GCAAACAGAGCTGGTGCCGATCGCTTCCGGCACGAT--------CCGGGA    509

BSNT_00717___    518 AACTGCTTCAGGAGATTGATGCCTC--TGTG------------CAAAATG    553
                     .|..|||    ||| .|||| ||.|  ||||            |..|..|
BL02811___kip    510 CAAGGCT----GAG-CTGAT-CCGCATTGTGGACGAGTCGTACCGGAGCG    553

BSNT_00717___    554 GCTATACTGTCAGCTATTCAGAGCTCGAAAACTATACGGCGGCGATCGGC    603
                     |||..||.|||||..||||.|||||||||.||||.||..|.|||||.|.|
BL02811___kip    554 GCTGCACGGTCAGTCATTCGGAGCTCGAAGACTACACCTCCGCGATTGCC    603

BSNT_00717___    604 GCCCCGATCTTTAATCATAAGCGCCAAGTGGCAGCCGGCATTAGCATTGC    653
                     ||.|||||.||.||||||||||||.||||.|||||.||.||.|||||.||
BL02811___kip    604 GCGCCGATTTTCAATCATAAGCGCGAAGTCGCAGCTGGGATCAGCATCGC    653

BSNT_00717___    654 AGGCTTTGAAGCGAGATTTACAG-AAGACAGGCTGCCCTATTTAACAGAA    702
                     .||.||||||||..|.||| ||| |||||.|.||.||.|||||.||.|||
BL02811___kip    654 CGGGTTTGAAGCCCGCTTT-CAGAAAGACCGTCTTCCTTATTTGACCGAA    702

BSNT_00717___    703 AAGGTG---AAGGACGCCGCTTTACAGATTTCAAGAAAAATAGGATATAC    749
                     |..|||   |||| ||.|||||.||  ||.||.||||||.||||.|.|  
BL02811___kip    703 AGAGTGAAAAAGG-CGGCGCTTGAC--ATCTCGAGAAAATTAGGTTTT--    747

BSNT_00717___    750 ATAA    753
                      ||.
BL02811___kip    748 -TAG    750


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