Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00710 and BL02806

See Amino acid alignment / Visit BSNT_00710 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:20
# Commandline: needle
#    -asequence dna-align/BSNT_00710___ycsF.1.5803.seq
#    -bsequence dna-align/BL02806___ycsF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00710___ycsF-BL02806___ycsF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00710___ycsF-BL02806___ycsF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00710___ycsF
# 2: BL02806___ycsF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 812
# Identity:     565/812 (69.6%)
# Similarity:   565/812 (69.6%)
# Gaps:          88/812 (10.8%)
# Score: 1945.5
# 
#
#=======================================

BSNT_00710___      1 GTGTTTCAGATTGATTTAAACTGTGATTTAGGAGAAAGCTTCGGATCCTA     50
                     .||..|||..|||||||||||||.|||.|.||||||||||||||..|.||
BL02806___ycs      1 ATGAATCAAGTTGATTTAAACTGCGATCTTGGAGAAAGCTTCGGCGCTTA     50

BSNT_00710___     51 CAAGATAGGTCTTGACCAAGATATTTTAGAGTATGTGACATCAGCGAATA    100
                     .||.||.||.||.||..|.||.|||.|.||||.|||.||||||||.||.|
BL02806___ycs     51 TAAAATCGGGCTGGATGAGGAGATTCTCGAGTTTGTTACATCAGCCAACA    100

BSNT_00710___    101 TCGCATGCGGATTTCATGCAGGAGATCCTAGTGTTATGCGAAAAACCGTC    150
                     ||||.||||||||||||||.|||||.|||.|.||.|||||.|||||||||
BL02806___ycs    101 TCGCTTGCGGATTTCATGCGGGAGACCCTGGCGTCATGCGCAAAACCGTC    150

BSNT_00710___    151 GCGCTTGCAGCGGAAAAAGGCGTAAAAATCGGTGCGCATCCGGG-CTTGC    199
                     ....|.||.||||||||||||||.||||||||.||||||||||| ||| |
BL02806___ycs    151 AAAATGGCGGCGGAAAAAGGCGTGAAAATCGGCGCGCATCCGGGACTT-C    199

BSNT_00710___    200 CGGATTTACTCGGTTTTGGGCGCCGCAATATGGCGATTTCTCCTGAGGAA    249
                     |.||||||...||.||.||||||||||||||||||||..|.|||||.|||
BL02806___ycs    200 CCGATTTAGCGGGATTCGGGCGCCGCAATATGGCGATCACGCCTGAAGAA    249

BSNT_00710___    250 GCGTATGATCTTGTCGTTTATCAAATTGGCGCGCTCTCTGGCTTTCTAAA    299
                     ||.||.|||||||||||.||||||||.||.|||||.||.||.||||||||
BL02806___ycs    250 GCATACGATCTTGTCGTGTATCAAATCGGTGCGCTTTCAGGATTTCTAAA    299

BSNT_00710___    300 AGCAGAGGGACTTCA-CATGCAGCACGTCAAGCCGCATGGCGCTTTATAC    348
                     .||.||.|| |.|.| |||||||||.||.||.||.||||||||..||||.
BL02806___ycs    300 GGCTGAAGG-CGTGACCATGCAGCATGTGAAACCCCATGGCGCACTATAT    348

BSNT_00710___    349 AATATGGCGGCAGTCGATCAAA------AACTGTCGGATGCTATCGCGAA    392
                     ||||||||      ||..||||      |||||||||||||.||||||..
BL02806___ycs    349 AATATGGC------CGCGCAAAGCCGGGAACTGTCGGATGCGATCGCGCG    392

BSNT_00710___    393 AGCTGTCTATAAGATTGATCCAGGCCTGATTCTTTTCGGTCTTGCTGAGA    442
                     .||.||.|||.|.|..||.||.|..||||||.|.||||||.|.||.|..|
BL02806___ycs    393 CGCAGTTTATCAAACAGACCCGGAACTGATTTTATTCGGTTTGGCGGGAA    442

BSNT_00710___    443 GTGAGCTTGT------------AAAAGCGGG----AGAACGGATCGGACT    476
                     |.||.|||||            ||.|||.||    |.|||||.||     
BL02806___ycs    443 GCGAACTTGTGCTTGCCGGTGAAAGAGCCGGTTTAAAAACGGCTC-----    487

BSNT_00710___    477 TCAGACCGCAAATGAAGTGTTCGCCGACAGAACATACCAATCGGACGGCA    526
                                |.|||||.|||||||||.|.|||||.|||...|||||.|
BL02806___ycs    488 -----------ACGAAGTTTTCGCCGACCGTACATATCAAGAAGACGGAA    526

BSNT_00710___    527 CGCTGACACCGCGCTCCCAGCCGGACGCACTCATTGAAAGTGATGATGCC    576
                     |||||||..|.|||..||||...||.||.||.|||.||..|||.||||..
BL02806___ycs    527 CGCTGACTTCCCGCCGCCAGAATGATGCGCTGATTCAAGATGACGATGAA    576

BSNT_00710___    577 GCCGTCACCCAGGTCATCAAAATGGTGAAAGAAGGGGCGGTCAAATCTCA    626
                     ||||||..||||||.|||...||||||||||||||...||||    |.||
BL02806___ycs    577 GCCGTCGGCCAGGTGATCCGCATGGTGAAAGAAGGCAAGGTC----CGCA    622

BSNT_00710___    627 ----GCAAGGACATGATGTGTCA---TTAAAAGCAGATACAGTCTGCATT    669
                         |||.|||...||  |||||   || |||||||||||.||.||||||
BL02806___ycs    623 GCCTGCAGGGAACGGA--TGTCAGCCTT-AAAGCAGATACGGTGTGCATT    669

BSNT_00710___    670 CATGGAGATGGAGCCCATGCGCTGACA-TTTGCGCAAAAAATC-----AG    713
                     ||.||.|||||.||.||.||||| .|| ||||||.||||||||     .|
BL02806___ycs    670 CACGGTGATGGTGCACACGCGCT-TCATTTTGCGAAAAAAATCCGCCGCG    718

BSNT_00710___    714 AAAACAGCTCAAAGCGGCTGGAATTGAAGTGAC-AGCTATTTCAGAACAG    762
                     ||     ||||.|||.||.|..|||.|||| || ||||.||         
BL02806___ycs    719 AA-----CTCAGAGCAGCAGATATTAAAGT-ACAAGCTTTT---------    753

BSNT_00710___    763 AGGTCAACATAA    774
                        ||.||||.|
BL02806___ycs    754 ---TCTACATGA    762


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00710 and BL02806

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
