Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05831 and BL02804

See Amino acid alignment / Visit BSNT_05831 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:54
# Commandline: needle
#    -asequence dna-align/BSNT_05831___ywcE.1.5803.seq
#    -bsequence dna-align/BL02804___ywcE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05831___ywcE-BL02804___ywcE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05831___ywcE-BL02804___ywcE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05831___ywcE
# 2: BL02804___ywcE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 285
# Identity:     203/285 (71.2%)
# Similarity:   203/285 (71.2%)
# Gaps:          45/285 (15.8%)
# Score: 717.0
# 
#
#=======================================

BSNT_05831___      1 ATGATGGACATGTTTTTTGCTTACTTACTGGTTGCCAGCGCAACGCCTCT     50
                        |||||.||||||||.||||||||.|||.||||.|||||.||.|||.|
BL02804___ywc      1 ---ATGGATATGTTTTTCGCTTACTTGCTGATTGCAAGCGCCACTCCTTT     47

BSNT_05831___     51 CTTTATTTGGCTTGATAACAAAAAAGTCGCACTCTCAGCTATTCCGCCAA    100
                     .|||.|.|||||.||.||||||||.||||||.|.||..||||||||||.|
BL02804___ywc     48 ATTTTTATGGCTGGACAACAAAAAGGTCGCAATTTCTTCTATTCCGCCCA     97

BSNT_05831___    101 TCATTTTAATGTGGGTATTCTTCTTCTTT---TACGCAACAGAAAGCCTT    147
                     ||||||||||||||||||||||||| |||   ||.| |.||| .||||||
BL02804___ywc     98 TCATTTTAATGTGGGTATTCTTCTT-TTTCTATATG-ACCAG-CAGCCTT    144

BSNT_05831___    148 TCTCC-ACTTGGACACACTCTCATGAT-----TATCTTGTTTGC--CGTT    189
                     ||||| || .||||||.||||||||||     |.| ||.||..|  ||||
BL02804___ywc    145 TCTCCTAC-AGGACACTCTCTCATGATCGCACTCT-TTATTCTCAACGTT    192

BSNT_05831___    190 AACGTCATTGTCGCTCATATCGCCGCATTTATCATTTACGGCCTTCCGT-    238
                        ||||   ||||.|||.|||||||.||.|||||.|||||.|||||.| 
BL02804___ywc    193 ---GTCA---TCGCCCATGTCGCCGCTTTCATCATCTACGGACTTCCATT    236

BSNT_05831___    239 -ATCTTCGCAGAAAGCGAAGCAGCTGA--------    264
                      |||  ||        ||||||..|||        
BL02804___ywc    237 GATC--CG--------GAAGCACATGAGCCGATAA    261


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.