Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03399 and BL02795
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03399___yphA.1.5803.seq
# -bsequence dna-align/BL02795.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03399___yphA-BL02795.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03399___yphA-BL02795.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03399___yphA
# 2: BL02795
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 688
# Identity: 416/688 (60.5%)
# Similarity: 416/688 (60.5%)
# Gaps: 173/688 (25.1%)
# Score: 1160.5
#
#
#=======================================
BSNT_03399___ 1 ATGGAACAATTTTATTACTATTGGTCAATGTGGTTTCTGTGGGTTCTGAC 50
||||||.||||.|||||.||||||||||||||||||.|.|||||.|||||
BL02795 1 ATGGAAGAATTCTATTATTATTGGTCAATGTGGTTTTTATGGGTGCTGAC 50
BSNT_03399___ 51 AACATTTATTTTTGAAAAGACGAAAAGACGAATTGCCGTCTCT------- 93
.||.|||||..|.|| ||||| ||...|| ||.||
BL02795 51 GACTTTTATCCTCGA------GAAAA-ACAGGTT----TCGCTTTTATGC 89
BSNT_03399___ 94 GTC----TTTATTTTAACT-AATATTATTCTAAGCATACATGACAT---- 134
||| |||||||| .|| ||.||.|||.||||.||..||.|..|
BL02795 90 GTCAGCATTTATTTT-GCTCAACATCATTTTAAGTATGTATCAGGTCAGG 138
BSNT_03399___ 135 CGCTTTA--TATTTTTCCCTGAATGTTGCATATTTGATGTTTTTCGTTT- 181
|.||||| |||||| ||||..||.|||||| ||||||
BL02795 139 CTCTTTATGTATTTT------AATGCCGCCTATTTG-------TCGTTTT 175
BSNT_03399___ 182 ---GCGGATGTGTCT--ATGC----CGGGTATTTGGG--------AATGT 214
.|||| |.|| |||| |||.|.||||.| ||.||
BL02795 176 ATATCGGA---GCCTTCATGCTGTGCGGTTTTTTGAGGCTTCATAAAAGT 222
BSNT_03399___ 215 ATC-----GTTTTCGTTACATCATGGTCTATCTGACGCTCGTTG----CC 255
.|| |.| |.|.|.|||| |.||||.|| ||
BL02795 223 GTCAAGCGGCT---GCTGCTTCAT-----------CTCTCGATGGTGTCC 258
BSNT_03399___ 256 GCGTATGCGTTTGTT-TATCTTTTTGCATTATATGACCCGGTTTGGTTCA 304
||.||.| ||||.|| |.|||.|||||||||||||||||.||||||||.|
BL02795 259 GCCTACG-GTTTTTTGTTTCTGTTTGCATTATATGACCCTGTTTGGTTTA 307
BSNT_03399___ 305 TCATAAAACCTGAGTGGGCTGCTGTTATATTAATAGTGCTT-TTAACAGC 353
||.||||.|||||.|| |||| ||..|.||..||.|| |.|.||
BL02795 308 TCCTAAAGCCTGAATG----GCTG--ATCATCATCTTGTTTGTCATCA-- 349
BSNT_03399___ 354 TTCTGTTGAAAGGA-ATTTTGAGAAGCAGCTT--------GTCT-----T 389
|||.||.| .|||||| |||.||||| |||| |
BL02795 350 ------TGACAGCAGCTTTTGA-AAGAAGCTTCGCCGTCCGTCTCGGGGT 392
BSNT_03399___ 390 ATTTGTCCTAGGGATGTGCCAAGGCGAACTGGTGTATTCATTTGTGATCC 439
.|||||.||.|||||||||||.||.||.||..|||||.||||.||.|| |
BL02795 393 GTTTGTGCTCGGGATGTGCCAGGGGGAGCTCTTGTATACATTCGTCAT-C 441
BSNT_03399___ 440 AG-AAGTTGGCCGGGGCTATG--------GCTGTCGGCGGCT-TTCAATG 479
|| |||.| ||||| ||.|..|||||.| ||| |||
BL02795 442 AGAAAGCT--------CTATGGAGACATTGCAGCGGGCGGTTATTC-ATG 482
BSNT_03399___ 480 GCTG--AATGCGTGTTCTGCGGGAATGATATTGCT-GTTT--GGCATATC 524
|||| ||| |||..||||||| |||..|.|| |||| ||.|||||
BL02795 483 GCTGTCAAT--GTGCGCTGCGGG---GATCGTTCTCGTTTACGGAATATC 527
BSNT_03399___ 525 TAAATACGAACACCTCG------CAAGCC------AGATTGGTCAGAAAA 562
..|.||.|||||.|| | ||||.| |.|||| ||
BL02795 528 CCAGTATGAACAGCT-GATGCATCAAGTCTATCATAAATTG-------AA 569
BSNT_03399___ 563 GCAAAAGATCAAACAAAGGAGCTACCAAAATGTCATGA 600
|| |||..||.||||||||..|.||||||||||||
BL02795 570 GC----GATTGAATAAAGGAGCAGCAAAAATGTCATGA 603
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