Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03372 and BL02775
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:15
# Commandline: needle
# -asequence dna-align/BSNT_03372___trpE.1.5803.seq
# -bsequence dna-align/BL02775___trpE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03372___trpE-BL02775___trpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03372___trpE-BL02775___trpE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03372___trpE
# 2: BL02775___trpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1659
# Identity: 1103/1659 (66.5%)
# Similarity: 1103/1659 (66.5%)
# Gaps: 222/1659 (13.4%)
# Score: 3536.0
#
#
#=======================================
BSNT_03372___ 1 ATGAATTTCCAATCAAAC--ATTT--CCGCATTTTTAGAGGACAGCTT-G 45
.|||.|.| .||||| |||| ||.|.||||.|||||| || .
BL02775___trp 1 TTGAGTCT----GCAAACCGATTTTGCCTCTTTTTCAGAGGA----TTCT 42
BSNT_03372___ 46 TCCCAC---CACACGATACCGATTGTGGAGACCTTCACAGTCGATACACT 92
||.||| .|.||||||||||||.|.||||..||..|.||||||||.||
BL02775___trp 43 TCACACTTTAAAACGATACCGATTATTGAGAGTTTTTCCGTCGATACGCT 92
BSNT_03372___ 93 GACACCCATTCAAATGATAGAGAAGCTTGACAGGGAGATTACG--TATCT 140
|||.|||.|||||.||.|.|||||||| .||||.|||...|| |||.|
BL02775___trp 93 GACGCCCGTTCAATTGGTCGAGAAGCT--GCAGGAAGACATCGTCTATTT 140
BSNT_03372___ 141 TCTTGAAAGCAAGGACGATACATCCACTTGGTCCAGATATTCGTTTATCG 190
.||.||||||.||||.||.||.||..|.|||||.||||||||.||.||||
BL02775___trp 141 GCTGGAAAGCCAGGATGAAACCTCTGCATGGTCAAGATATTCTTTCATCG 190
BSNT_03372___ 191 GCCTGAATCCATTTCTCACAATTAAAGAAGA--GCAGGGCTGTTTTTCGG 238
||||..|.||.|||.|.||.||.|||||||| || ||.|.||||..||.
BL02775___trp 191 GCCTTGACCCCTTTTTGACGATCAAAGAAGAACGC-GGCCGGTTTCACGC 239
BSNT_03372___ 239 CCGCTGATCAGGACAGCA----AATCTCTTTA--------CACAGGAAAT 276
|.|| ||||| |.|||| || .||||| |||||
BL02775___trp 240 CTGC-GATCA--AAAGCAGAAGAA--GCTTTATTCGGCTTCACAG----- 279
BSNT_03372___ 277 GAACTAAAAGAAGTGCT-GAACTGGAT----GAATACCACATACAAAATC 321
.|||||||.||.|| ||| ||||| || .||.||....|||
BL02775___trp 280 ---TTAAAAGACGTTCTCGAA-TGGATGTCGGA----GACGTATTCGATC 321
BSNT_03372___ 322 AAAACACCTCAGCTTGGCATTCCTTTTGTCGGCGGAGCTGTCGGGTACTT 371
|||.|.|||.||||.|.|||.||.|||...||.|||||.|||||.||.||
BL02775___trp 322 AAAGCGCCTGAGCTCGACATCCCGTTTACAGGAGGAGCGGTCGGCTATTT 371
BSNT_03372___ 372 AAGCTATGATATGATCCCGCTGATTGAACCTTCTGTTCCTTC-----GCA 416
||||||.|||.|.||.|||||.|||||||| .|||.|| |||
BL02775___trp 372 AAGCTACGATTTAATGCCGCTCATTGAACC-----GTCCATCAAAGGGCA 416
BSNT_03372___ 417 TACAAAAGAAACAGACATGGAAAAGTGTATGCTGTTTGTTTGCCGGACAT 466
.|..||||||||.||.||||.|||.||..|.||||||||.||||||||..
BL02775___trp 417 CAGCAAAGAAACGGAAATGGCAAAATGCCTCCTGTTTGTCTGCCGGACGA 466
BSNT_03372___ 467 TAATTGCGTATGATCATGAAACCAAAAACGTCCACTTTATCCAATATGCA 516
|.||.||.||||||||.|||...|||||..|.||.||.|||||.|||.||
BL02775___trp 467 TGATCGCTTATGATCACGAACTGAAAAAGCTGCATTTCATCCACTATACA 516
BSNT_03372___ 517 AGGCTT------------AATGGAGAGGAAA-------------CAAAAA 541
|||||| |||.|.||||||| ||||||
BL02775___trp 517 AGGCTTGAAGGCAGTGAAAATAGGGAGGAAAAGCGCCGCATTTTCAAAAA 566
BSNT_03372___ 542 ACGAAAAAATGGATGTATTCCA--TCAAAATCATCTGGAGCTT-----CA 584
..|.|||.|.| | |||| |.||||| ||
BL02775___trp 567 GGGGAAAGAAG----------AGCTCAA--------GCAGCTTACACACA 598
BSNT_03372___ 585 AAATCTCATTGAAAAAATGATGGACCAAAAAAACATAAAAGAGCTGTTTC 634
...|.||| ||||..||||.....|||||||||||||
BL02775___trp 599 GGCTGTCA--------------GACCGGAAAACGCCGAAAGAGCTGTTTC 634
BSNT_03372___ 635 TCTCTGCTGATTCATACAAG--------ACG---CCCAGCTTTGAGACGG 673
| ||.| |||| ||| ||||||||||| |.||
BL02775___trp 635 T-TCCG----------CAAGGACGGCACACGGCCCCCAGCTTTGA-AGGG 672
BSNT_03372___ 674 TATCTTCTAAT-----TATGAAAAAT--CGGCTTTTATGGCTGATGTAGA 716
..|| ||| |||||.|||| ||| |||.||||.|||||.|
BL02775___trp 673 ATTC----AATCAACATATGAGAAATCCCGG--TTTTTGGCCGATGTCG- 715
BSNT_03372___ 717 AAAAATC-----AAAAGCTATATAAAAACAGGCGATATCTTCCAGGGTGT 761
||| |||...||.||.|||.|.||.||.||.||.||.||.||
BL02775___trp 716 ----ATCGCTTGAAAGAATACATTAAAGCGGGAGACATTTTTCAAGGCGT 761
BSNT_03372___ 762 TTTATCACAAAAATTTGAGGTGCCGATAAAAGCAGATGCTTTTGAGTTAT 811
..|.||.||||..||.||..|.|||.|.||.|..|.|.||||||||||||
BL02775___trp 762 CCTTTCGCAAAGGTTCGACATTCCGGTGAAGGTCGGTTCTTTTGAGTTAT 811
BSNT_03372___ 812 ACCGAGTGCTTAGGATCGTCAATCCTTCGCCGTATATGTATTATATGAAA 861
||.|||||||.||.||..||||.||.||.|||||.|||||.||.||||..
BL02775___trp 812 ACAGAGTGCTGAGAATGATCAACCCGTCCCCGTACATGTACTACATGAGG 861
BSNT_03372___ 862 CTGCTAGACAGAGAAATAGTCGGCAGCTCTCCGGAACGGTTAATACACGT 911
||.|..|||.|.||..|.|||||.|||||.||.|||||..|.||.||.||
BL02775___trp 862 CTTCCTGACCGCGATCTCGTCGGAAGCTCGCCCGAACGTCTGATCCATGT 911
BSNT_03372___ 912 TCAAGACGGGCA-CTTAGAAATCCATCCGATTGCCGGTACGAGAAAA--- 957
||||.||||.|| ||| ||||||||||||||.|||||.||.||.|||
BL02775___trp 912 TCAAAACGGCCATCTT-GAAATCCATCCGATCGCCGGCACAAGGAAAAGG 960
BSNT_03372___ 958 CGCGGTG--CAGACAAAGCTGAAGATGAG-AGATTGAA-------GGTTG 997
.|||||| ||| |||||.|||.|| .|.||||| ..|||
BL02775___trp 961 GGCGGTGATCAG-----GCTGAGGATAAGCGGCTTGAAAAAGAACTATTG 1005
BSNT_03372___ 998 AGCTGATGAAGGATGAAAAAGAAAAGGCGGAGCATTACATGCTCGTTGAT 1047
||| |||||.||||||||.|||||||||||||||||.||.|||
BL02775___trp 1006 -GCT-------GATGAGAAAGAAAAAGCGGAGCATTACATGCTTGTCGAT 1047
BSNT_03372___ 1048 CTTGCCCGAAACGATATCGGCAGAGTAGCAGAGTATGGTTCTGTTTCTGT 1097
.|.||..||||.|||||||||||||||||.|||||.||.|||||....||
BL02775___trp 1048 TTGGCGAGAAATGATATCGGCAGAGTAGCTGAGTACGGGTCTGTCCAAGT 1097
BSNT_03372___ 1098 GCCGGAGTTCACAAAAATTGTTTCCTTTTCACATGTCATGCACATTATCT 1147
|||.|||||.||.|||||.|||||||||||.||.|||||||||||.||.|
BL02775___trp 1098 GCCCGAGTTTACGAAAATCGTTTCCTTTTCGCACGTCATGCACATCATTT 1147
BSNT_03372___ 1148 CGGTGGTTACAGGCCGA-TTGAAAAAAGGG-GTTCATCCTGTCGATGCAC 1195
||.|.||.||.||| | ||.||||..||| ||.||.||.||.||.||..
BL02775___trp 1148 CGATCGTAACCGGC--ACTTTAAAAGCGGGTGTCCACCCGGTTGACGCTT 1195
BSNT_03372___ 1196 TGATGTCTGCTTTCCCGGCGGGGACTTTAACAGGCGCACCCAAAATCCGT 1245
|.|||...||.||.|||||.||.|||||.||.|||||.||.||||||||.
BL02775___trp 1196 TAATGAGCGCATTTCCGGCCGGAACTTTGACCGGCGCTCCGAAAATCCGC 1245
BSNT_03372___ 1246 GCCATGCAGCTTTTGCAAGAGCTCGAGCCAACACCGAGAGAGACATACGG 1295
||.||.||||||||..|.|||||.|||||...||||||.||.||||||||
BL02775___trp 1246 GCGATTCAGCTTTTAAATGAGCTTGAGCCCGAACCGAGGGAAACATACGG 1295
BSNT_03372___ 1296 AGGATGTATTGCCTACATTGGGTTTGACGGGAATATCGACTCTTGTATTA 1345
||||||.|||||.|||||.||.||||||||.||||||||.||.||.||.|
BL02775___trp 1296 AGGATGCATTGCTTACATCGGATTTGACGGAAATATCGATTCGTGCATCA 1345
BSNT_03372___ 1346 CGATTCGCACGATGAGTGTAAAGAACGGCGTTGCATCGATACAGGCAGGT 1395
||||.||.||||||||.||.||.|||||.||.||.||.||.|||||.||.
BL02775___trp 1346 CGATCCGGACGATGAGCGTGAAAAACGGAGTGGCGTCCATTCAGGCCGGG 1395
BSNT_03372___ 1396 GCTGGCATTGTTGCTGATTCTGTTCCGGAAGCCGAATACGAAGAAAGCTG 1445
||.|||||.||.||.||.||.||.||.|||...||||..|||||.|.|||
BL02775___trp 1396 GCGGGCATCGTAGCCGACTCCGTGCCTGAAAAAGAATGGGAAGAGACCTG 1445
BSNT_03372___ 1446 TAATAAAGCCGGTGCGCTGCTGAAAACGATTCATATTGCAGAAGACATGT 1495
.||||||||.||.||.|||.|.|||||||||||.||.||||||||.|.||
BL02775___trp 1446 CAATAAAGCAGGGGCTCTGTTAAAAACGATTCAAATCGCAGAAGAAACGT 1495
BSNT_03372___ 1496 TTCATAGCAA----GGAGGATAAAGCTG--ATGAACAGATTTCTACAATT 1539
||| |.|.|| |||||| |.| ||||||..|.|.||..|||.
BL02775___trp 1496 TTC-TCGAAAAGGGGGAGGA-----CGGCAATGAACGAACTGCTGAAATC 1539
BSNT_03372___ 1540 GTGCGTTGA 1548
.||||||.|
BL02775___trp 1540 ATGCGTTAA 1548
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