Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03370 and BL02774
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:14
# Commandline: needle
# -asequence dna-align/BSNT_03370___trpD.1.5803.seq
# -bsequence dna-align/BL02774___trpD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03370___trpD-BL02774___trpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03370___trpD-BL02774___trpD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03370___trpD
# 2: BL02774___trpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1093
# Identity: 702/1093 (64.2%)
# Similarity: 702/1093 (64.2%)
# Gaps: 152/1093 (13.9%)
# Score: 2107.5
#
#
#=======================================
BSNT_03370___ 1 ATGAACAGATTTCTACAATTGTGCGTTGACGGAAAAACCCTTACTG---- 46
||||||..|.|.||..|||..||||||.|||||...||.||.|.||
BL02774___trp 1 ATGAACGAACTGCTGAAATCATGCGTTAACGGACGGACACTGAATGAAAT 50
BSNT_03370___ 47 CCGGTGAGGCTGAAAC-GC-TGATG---AATATGATGA-----TGGC--A 84
| ||||| |.|| || |.||| .|.||||||| |.|| |
BL02774___trp 51 C----GAGGC--ACACAGCATCATGCGCGACATGATGACCGGCTCGCTGA 94
BSNT_03370___ 85 GCGGAAATGACTCCTTCTGAAATGGGTGGTATATTGTCAATTCTTGCTCA 134
||| ||.|.|||||.||.||..|..||||..||||.||..|
BL02774___trp 95 GCG----------CTGCGGAAATCGGAGGCCTCCTGTCCGTTCTCGCCTA 134
BSNT_03370___ 135 TCGGGGGGAGACGCCAGAAGAGCTTGCGGGTTTTGTGAAGGCAATGCGGG 184
..||||.||.|||.|.||||||.||.||||.|||||.|..||.|||||||
BL02774___trp 135 CAGGGGAGAAACGGCTGAAGAGATTACGGGATTTGTCAGAGCCATGCGGG 184
BSNT_03370___ 185 CACACGCTCTTACAGTCGATGGACTTCCTG---ATATTGTTGATACATGC 231
..||.||.|.||||.|.||.||| ||.| ||.||||||||||.|||
BL02774___trp 185 AGCAGGCGCATACAATAGACGGA---CCGGAACATGTTGTTGATACGTGC 231
BSNT_03370___ 232 GGAACAGGGGGAGACGGTATTTCCACTTTTAATATCTCAACGGCCTCGGC 281
|||||.||.||||||||.|..|||||.||.||.||.||.||.||..|.||
BL02774___trp 232 GGAACCGGAGGAGACGGAAGCTCCACCTTCAACATTTCCACAGCGGCTGC 281
BSNT_03370___ 282 AATTGTTGCCTCGGCAGCTGGCGCGAAAATCGCTAAGCATGGCAATCGCT 331
.||..|.||.||..||||.||.||.||||||||.||.||.||.|||||.|
BL02774___trp 282 GATCATCGCTTCATCAGCCGGGGCAAAAATCGCAAAACACGGTAATCGAT 331
BSNT_03370___ 332 CTGTCTCTTCTAAAAGCGGAAGCGCTGATGTTTTAGAGGAGCTAGAGGTT 381
|.||.|||||.||||||||.||||||||.|||.|.||..|.||.|..|||
BL02774___trp 332 CCGTTTCTTCAAAAAGCGGGAGCGCTGACGTTCTCGAATATCTCGGCGTT 381
BSNT_03370___ 382 TCTATTCAAACCACTCCCGAAAAGGTCAA-----AAGCAGCATTGAAACA 426
||||||||.||..|.||.|||.| || ||| |||||||
BL02774___trp 382 TCTATTCAGACGTCGCCTGAAGA----AACGATTAAG-AGCATTG----- 421
BSNT_03370___ 427 AAC-----AACATGGGATTTCTTTTTGCGCC--GCT-TTACTATTCGTCT 468
||| ||.||||||||.||.|.|||||| ||| |.|| ||.||.
BL02774___trp 422 AACGCCGAAATATGGGATTCCTGTATGCGCCAAGCTATCAC---TCTTCC 468
BSNT_03370___ 469 ATGAAACATGTAGCAGGTACTAGAAAAGAGCTAGGTTTCAGAACGGTATT 518
|||||.||.||.|||||..|.||.||.||.||.|.|||.|||||.|||||
BL02774___trp 469 ATGAAGCACGTGGCAGGCGCGAGGAAGGATCTGGCTTTTAGAACCGTATT 518
BSNT_03370___ 519 TAATCTGCTTGGGCCGCTCAGCAATCCTTTACAGGCGAAGCGTCAGGTGA 568
.||||||||.||.|||||||||||.||..|..||||.||.||.|||||||
BL02774___trp 519 CAATCTGCTCGGCCCGCTCAGCAACCCGATGAAGGCCAAACGCCAGGTGA 568
BSNT_03370___ 569 TTGGGGTCTATTCTGTTGAAAAAGCTGGACTGATGGCAAGCGCACTGGAG 618
|.||.|||||.||..|.||||||||....||.|||||..||||.||.||.
BL02774___trp 569 TCGGCGTCTACTCGATCGAAAAAGCAAAGCTTATGGCCCGCGCTCTTGAA 618
BSNT_03370___ 619 ACGTTTCAGCCGAAGCACGTTATGTTTGTATCAAGCCGTGACGGTTTAGA 668
.|||||.|.|||.|||||||..|||||||.||.|||||.||||||.|.||
BL02774___trp 619 GCGTTTGAACCGGAGCACGTATTGTTTGTTTCGAGCCGGGACGGTCTTGA 668
BSNT_03370___ 669 TGAGCTTTCAATTACAGCACCGACCGACGTGATTGAA-TTAAAGGACGGA 717
|||.||.||.||.|||.|.|||||.||.||.|||||| |.|||||
BL02774___trp 669 TGAACTGTCGATCACATCGCCGACAGATGTAATTGAACTGAAAGG----- 713
BSNT_03370___ 718 GAGCGCCGG----------GAATATACCGTTTCACCCGAAGATTTCGG-- 755
||| |||||.|||||....||.|..|||.|.||
BL02774___trp 714 ------CGGCAAAACATACGAATACACCGTCGAGCCGGGCGATGTTGGAC 757
BSNT_03370___ 756 ----TTTCACAAATGGCAGACTTGA-AGATTTACAGGTGCAGTCACCGAA 800
|.|| ||.||.| ||| |||..|.||||||..|.|.||..|
BL02774___trp 758 TGCCTCTC------GGAAGGC-TGAGAGACATTCAGGTGGCGACGCCTGA 800
BSNT_03370___ 801 AGAGAGCGCCTATCTCAT--TCAGAATATTTTTGAAAATAAAAGCAGCAG 848
|||.||||.|..|||.|| || .||||||| .||||.|.||.|
BL02774___trp 801 AGAAAGCGGCCGTCTGATCGTC--GATATTTT------GAAAAACCGCGG 842
BSNT_03370___ 849 T------TCCGCTTTATC-TATTACGGCTTTTAATGCGGGAGCTGCGATT 891
| ||.|||.| || |||..|.||.||||||||.||||| ||.||
BL02774___trp 843 TCCGGACTCGGCTGT-TCATATCGCAGCGTTTAATGCCGGAGC--CGCTT 889
BSNT_03370___ 892 TACACGGCG-------------GGAATTACCGCCTCACTGAAGGAAGGAA 928
||.|||.|| |||.||| ||.||.||
BL02774___trp 890 TATACGTCGCAGAACAGGCAGCGGATTTA-----------AAAGAGGG-- 926
BSNT_03370___ 929 CG--GAGCTGGCGTTAGAGACGATTACAAGCG--GAGGCGCTGCCGCGCA 974
|| |.|||.||.|||||..|..||.|..||| ||.||||| |...||
BL02774___trp 927 CGTTGCGCTCGCTTTAGAAGCTGTTGCTGGCGGTGAAGCGCT--CAATCA 974
BSNT_03370___ 975 GCTTGAACGACTAAAGCAGAAAGAGGAAGAGATCTATGCTTGA 1017
|||.||.|||.||||.|||||||||||||||.|.|||||||.|
BL02774___trp 975 GCTGGAGCGATTAAAACAGAAAGAGGAAGAGTTGTATGCTTAA 1017
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