Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03370 and BL02774

See Amino acid alignment / Visit BSNT_03370 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:14
# Commandline: needle
#    -asequence dna-align/BSNT_03370___trpD.1.5803.seq
#    -bsequence dna-align/BL02774___trpD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03370___trpD-BL02774___trpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03370___trpD-BL02774___trpD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03370___trpD
# 2: BL02774___trpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1093
# Identity:     702/1093 (64.2%)
# Similarity:   702/1093 (64.2%)
# Gaps:         152/1093 (13.9%)
# Score: 2107.5
# 
#
#=======================================

BSNT_03370___      1 ATGAACAGATTTCTACAATTGTGCGTTGACGGAAAAACCCTTACTG----     46
                     ||||||..|.|.||..|||..||||||.|||||...||.||.|.||    
BL02774___trp      1 ATGAACGAACTGCTGAAATCATGCGTTAACGGACGGACACTGAATGAAAT     50

BSNT_03370___     47 CCGGTGAGGCTGAAAC-GC-TGATG---AATATGATGA-----TGGC--A     84
                     |    |||||  |.|| || |.|||   .|.|||||||     |.||  |
BL02774___trp     51 C----GAGGC--ACACAGCATCATGCGCGACATGATGACCGGCTCGCTGA     94

BSNT_03370___     85 GCGGAAATGACTCCTTCTGAAATGGGTGGTATATTGTCAATTCTTGCTCA    134
                     |||          ||.|.|||||.||.||..|..||||..||||.||..|
BL02774___trp     95 GCG----------CTGCGGAAATCGGAGGCCTCCTGTCCGTTCTCGCCTA    134

BSNT_03370___    135 TCGGGGGGAGACGCCAGAAGAGCTTGCGGGTTTTGTGAAGGCAATGCGGG    184
                     ..||||.||.|||.|.||||||.||.||||.|||||.|..||.|||||||
BL02774___trp    135 CAGGGGAGAAACGGCTGAAGAGATTACGGGATTTGTCAGAGCCATGCGGG    184

BSNT_03370___    185 CACACGCTCTTACAGTCGATGGACTTCCTG---ATATTGTTGATACATGC    231
                     ..||.||.|.||||.|.||.|||   ||.|   ||.||||||||||.|||
BL02774___trp    185 AGCAGGCGCATACAATAGACGGA---CCGGAACATGTTGTTGATACGTGC    231

BSNT_03370___    232 GGAACAGGGGGAGACGGTATTTCCACTTTTAATATCTCAACGGCCTCGGC    281
                     |||||.||.||||||||.|..|||||.||.||.||.||.||.||..|.||
BL02774___trp    232 GGAACCGGAGGAGACGGAAGCTCCACCTTCAACATTTCCACAGCGGCTGC    281

BSNT_03370___    282 AATTGTTGCCTCGGCAGCTGGCGCGAAAATCGCTAAGCATGGCAATCGCT    331
                     .||..|.||.||..||||.||.||.||||||||.||.||.||.|||||.|
BL02774___trp    282 GATCATCGCTTCATCAGCCGGGGCAAAAATCGCAAAACACGGTAATCGAT    331

BSNT_03370___    332 CTGTCTCTTCTAAAAGCGGAAGCGCTGATGTTTTAGAGGAGCTAGAGGTT    381
                     |.||.|||||.||||||||.||||||||.|||.|.||..|.||.|..|||
BL02774___trp    332 CCGTTTCTTCAAAAAGCGGGAGCGCTGACGTTCTCGAATATCTCGGCGTT    381

BSNT_03370___    382 TCTATTCAAACCACTCCCGAAAAGGTCAA-----AAGCAGCATTGAAACA    426
                     ||||||||.||..|.||.|||.|    ||     ||| |||||||     
BL02774___trp    382 TCTATTCAGACGTCGCCTGAAGA----AACGATTAAG-AGCATTG-----    421

BSNT_03370___    427 AAC-----AACATGGGATTTCTTTTTGCGCC--GCT-TTACTATTCGTCT    468
                     |||     ||.||||||||.||.|.||||||  ||| |.||   ||.||.
BL02774___trp    422 AACGCCGAAATATGGGATTCCTGTATGCGCCAAGCTATCAC---TCTTCC    468

BSNT_03370___    469 ATGAAACATGTAGCAGGTACTAGAAAAGAGCTAGGTTTCAGAACGGTATT    518
                     |||||.||.||.|||||..|.||.||.||.||.|.|||.|||||.|||||
BL02774___trp    469 ATGAAGCACGTGGCAGGCGCGAGGAAGGATCTGGCTTTTAGAACCGTATT    518

BSNT_03370___    519 TAATCTGCTTGGGCCGCTCAGCAATCCTTTACAGGCGAAGCGTCAGGTGA    568
                     .||||||||.||.|||||||||||.||..|..||||.||.||.|||||||
BL02774___trp    519 CAATCTGCTCGGCCCGCTCAGCAACCCGATGAAGGCCAAACGCCAGGTGA    568

BSNT_03370___    569 TTGGGGTCTATTCTGTTGAAAAAGCTGGACTGATGGCAAGCGCACTGGAG    618
                     |.||.|||||.||..|.||||||||....||.|||||..||||.||.||.
BL02774___trp    569 TCGGCGTCTACTCGATCGAAAAAGCAAAGCTTATGGCCCGCGCTCTTGAA    618

BSNT_03370___    619 ACGTTTCAGCCGAAGCACGTTATGTTTGTATCAAGCCGTGACGGTTTAGA    668
                     .|||||.|.|||.|||||||..|||||||.||.|||||.||||||.|.||
BL02774___trp    619 GCGTTTGAACCGGAGCACGTATTGTTTGTTTCGAGCCGGGACGGTCTTGA    668

BSNT_03370___    669 TGAGCTTTCAATTACAGCACCGACCGACGTGATTGAA-TTAAAGGACGGA    717
                     |||.||.||.||.|||.|.|||||.||.||.|||||| |.|||||     
BL02774___trp    669 TGAACTGTCGATCACATCGCCGACAGATGTAATTGAACTGAAAGG-----    713

BSNT_03370___    718 GAGCGCCGG----------GAATATACCGTTTCACCCGAAGATTTCGG--    755
                           |||          |||||.|||||....||.|..|||.|.||  
BL02774___trp    714 ------CGGCAAAACATACGAATACACCGTCGAGCCGGGCGATGTTGGAC    757

BSNT_03370___    756 ----TTTCACAAATGGCAGACTTGA-AGATTTACAGGTGCAGTCACCGAA    800
                         |.||      ||.||.| ||| |||..|.||||||..|.|.||..|
BL02774___trp    758 TGCCTCTC------GGAAGGC-TGAGAGACATTCAGGTGGCGACGCCTGA    800

BSNT_03370___    801 AGAGAGCGCCTATCTCAT--TCAGAATATTTTTGAAAATAAAAGCAGCAG    848
                     |||.||||.|..|||.||  ||  .|||||||      .||||.|.||.|
BL02774___trp    801 AGAAAGCGGCCGTCTGATCGTC--GATATTTT------GAAAAACCGCGG    842

BSNT_03370___    849 T------TCCGCTTTATC-TATTACGGCTTTTAATGCGGGAGCTGCGATT    891
                     |      ||.|||.| || |||..|.||.||||||||.|||||  ||.||
BL02774___trp    843 TCCGGACTCGGCTGT-TCATATCGCAGCGTTTAATGCCGGAGC--CGCTT    889

BSNT_03370___    892 TACACGGCG-------------GGAATTACCGCCTCACTGAAGGAAGGAA    928
                     ||.|||.||             |||.|||           ||.||.||  
BL02774___trp    890 TATACGTCGCAGAACAGGCAGCGGATTTA-----------AAAGAGGG--    926

BSNT_03370___    929 CG--GAGCTGGCGTTAGAGACGATTACAAGCG--GAGGCGCTGCCGCGCA    974
                     ||  |.|||.||.|||||..|..||.|..|||  ||.|||||  |...||
BL02774___trp    927 CGTTGCGCTCGCTTTAGAAGCTGTTGCTGGCGGTGAAGCGCT--CAATCA    974

BSNT_03370___    975 GCTTGAACGACTAAAGCAGAAAGAGGAAGAGATCTATGCTTGA   1017
                     |||.||.|||.||||.|||||||||||||||.|.|||||||.|
BL02774___trp    975 GCTGGAGCGATTAAAACAGAAAGAGGAAGAGTTGTATGCTTAA   1017


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