Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03368 and BL02772
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:13
# Commandline: needle
# -asequence dna-align/BSNT_03368___trpF.1.5803.seq
# -bsequence dna-align/BL02772___trpF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03368___trpF-BL02772___trpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03368___trpF-BL02772___trpF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03368___trpF
# 2: BL02772___trpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 728
# Identity: 452/728 (62.1%)
# Similarity: 452/728 (62.1%)
# Gaps: 151/728 (20.7%)
# Score: 1361.5
#
#
#=======================================
BSNT_03368___ 1 GTGAAGAAACCGGCATTAAAATATTGCGGTATTCGGTCACTAAAGGATTT 50
.|||||||||||....|||||||||||||.||||..|||.|..|.|||||
BL02772___trp 1 ATGAAGAAACCGAGTCTAAAATATTGCGGGATTCATTCATTGGAAGATTT 50
BSNT_03368___ 51 -------GCAGCTTGCGGCGGAATCACAGGCTGATTACCTAGGATTTATT 93
.||||..|| ||..|.||.|||||.||.|||||||||
BL02772___trp 51 AAAGGTGACAGCCCGC-------TCGAAAGCCGATTATCTCGGATTTATT 93
BSNT_03368___ 94 TTTGCTGAAAGCAAACGAAAAGTATCTCCGGAAGATGTGAAA-------- 135
||.||.|||||||||||....|||...||||..|||||||||
BL02772___trp 94 TTCGCCGAAAGCAAACGGTCGGTAGACCCGGCGGATGTGAAACGGTGGTG 143
BSNT_03368___ 136 -----AAATGGCTGAAC-CAAGCTCGTGTCGAAAAACAGGTTGCAGGTGT 179
|||.||.| || |.||.| |||.||.|||..||.||
BL02772___trp 144 CGGCGAAACGGAT--ACGCCAGGT---------AAAAAGCTTGTCGGCGT 182
BSNT_03368___ 180 TTTTGATAATGAATCAATA-GAGACG-ATGTC-----ACGTATAGCCAAG 222
|||||.||||||| ||.| |||.|| |||.| .|||| .|||
BL02772___trp 183 TTTTGTTAATGAA--AACATGAGCCGAATGGCTGAAATCGTA----AAAG 226
BSNT_03368___ 223 A-----GCTTGAAGCTCGACGTCATTCAGCTTCACGGTGATGAAAAACCG 267
| ||||| |||||.||.|||||||||||.||||||| ||
BL02772___trp 227 ATGCAGGCTTG------GACGTGATCCAGCTTCACGGAGATGAAA---CG 267
BSNT_03368___ 268 GCGG-----ATGCTGCTGCTCTTCGCAAGC-TGACAGGCTGTGAAATATG 311
|||| ||...||.|| |...|||| ||||||.|||.||.|||||
BL02772___trp 268 GCGGCAGACATCAAGCGGC---TTAAAAGCATGACAGACTGCGAGATATG 314
BSNT_03368___ 312 GAAGGCGCTTCACCATCAAGATAACACAACTCAAGAA--ATAGCCCGCTT 359
||||||||| ||.||| |..||| ||| |||
BL02772___trp 315 GAAGGCGCT---CCCTCA-------------CGGGAATGATA--CCG--- 343
BSNT_03368___ 360 TAAAGATAATG-------------------TTGACGGCTTTGTGATTGAT 390
||.|||..||| |.|||||.|.|||.||.||.
BL02772___trp 344 TACAGAGCATGGCTTCTTTCGCACCTTACATCGACGGGTATGTCATCGAC 393
BSNT_03368___ 391 TCATCTGTAAAAGGGTCTAGAGGCGGAACTGGTGTTGCATTTTCTTGGGA 440
||.|||||.||||||...|||||.|||||.||.|||.|.|||||.|||||
BL02772___trp 394 TCGTCTGTCAAAGGGATGAGAGGGGGAACGGGAGTTTCGTTTTCGTGGGA 443
BSNT_03368___ 441 ATGTGTTCCG--GAATAT-----CAGC------AGGCGGCTATTGGTAAA 477
..|.||.||| |.|||| |||| ||..||| ||.
BL02772___trp 444 CAGCGTCCCGCTGTATATAGATGCAGCCCAAAGAGAAGGC-------AAG 486
BSNT_03368___ 478 CG-CTGCTTTATCGCTGGCGGCGTGAATCCGGATAGCATCACCGGCCTAT 526
|| ||| ||||||||.||.||||||||.|||||.|..|||.|.|..||.|
BL02772___trp 487 CGCCTG-TTTATCGCCGGAGGCGTGAACCCGGACACAATCGCAGATCTTT 535
BSNT_03368___ 527 TGAAATGGCAGCCAGAAGGAATTGACCTTGCCAGCGGAATTGAA-AAAAA 575
|.||..|||..||....|||||.|||.|.||.||||||||.||| |||.|
BL02772___trp 536 TAAAGCGGCGTCCGCCGGGAATCGACTTGGCAAGCGGAATCGAAGAAAGA 585
BSNT_03368___ 576 CGGACAAAAAGATC-AGAATCTGATGAGTCTTTTAGAAGAAAGGAT---- 620
.|.|.|||||| | |.||.|||||.||.|||||||||||||||||
BL02772___trp 586 GGCAGAAAAAG--CGAAAAGCTGATCAGCCTTTTAGAAGAAAGGATGTTC 633
BSNT_03368___ 621 GAACCGATATGTATCCATATCCGAATGA 648
|||| ||||||.|||||||||||||
BL02772___trp 634 GAAC----ATGTATTCATATCCGAATGA 657
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