Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03364 and BL02769
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:11
# Commandline: needle
# -asequence dna-align/BSNT_03364___hisC.1.5803.seq
# -bsequence dna-align/BL02769___hisC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03364___hisC-BL02769___hisC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03364___hisC-BL02769___hisC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03364___hisC
# 2: BL02769___hisC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1165
# Identity: 758/1165 (65.1%)
# Similarity: 758/1165 (65.1%)
# Gaps: 164/1165 (14.1%)
# Score: 2384.5
#
#
#=======================================
BSNT_03364___ 1 TTGCGTATCAAAGAACATTTAAAACAGCTGAAGCCTTATCAGCCTGGAAA 50
||||..||.||||||||.||||||||..|.|.||||||.|||||.||.||
BL02769___his 1 TTGCAAATTAAAGAACAGTTAAAACAATTAACGCCTTACCAGCCGGGCAA 50
BSNT_03364___ 51 GCCGATTGAAGCAGTGAAATCAGAATATGGCTTGGATAAA---------- 90
.||||||||||..||.|||..||| |.|.||
BL02769___his 51 ACCGATTGAAGAGGTCAAAAAAGA----------GTTCAACCTCGACCGG 90
BSNT_03364___ 91 GTTGTGAAGCTTGCTTCAAACGAGAATCCTTACGGCTGTTCAGAGGCTGC 140
||.||.|||||.||||||||.|||||||||||||||||||||||.||.||
BL02769___his 91 GTCGTCAAGCTCGCTTCAAATGAGAATCCTTACGGCTGTTCAGAAGCGGC 140
BSNT_03364___ 141 AAAAGAGGCGCTTCATCATGAGATTCAACAGCTAGCCCTTTACCCGGACG 190
|||.||.||.||.||...||||.|.||.||..|.||.||.||.||.||||
BL02769___his 141 AAAGGAAGCCCTCCAGATTGAGGTGCAGCAAATGGCTCTCTATCCTGACG 190
BSNT_03364___ 191 GGTATAGCGCCGCTTTGCGGACAAGGCT------CAGTAAGCACCTC--- 231
|.|||||.||.||.|||.|.||||.||| | ||.|||
BL02769___his 191 GCTATAGTGCGGCATTGAGAACAAAGCTTGCCTCC------CATCTCGGC 234
BSNT_03364___ 232 ---AATGTCAGCGAAACATCACTTATTTTCGGCAACGGTTCTGATGAAAT 278
|||| .|.|| |||||| ||..|.||.|||||..|.||.|||.|
BL02769___his 235 GTAAATG-AAACG-AACATC----ATCCTGGGAAACGGAACGGACGAAGT 278
BSNT_03364___ 279 CATTCAGATCATCTGCCGGGCATTTCT-----------------AAACAA 311
||||||.||.||.|.||| |||| |||||.
BL02769___his 279 CATTCAAATTATTTCCCG-----TTCTTTGTTGGACCCTGCCTCAAACAC 323
BSNT_03364___ 312 TAAAA---CCAATACGATCACTGCTGCCCCGACTTTTCCGCAATATAAAC 358
|..|| |.||| |||||.|||.|.|||||.||.|
BL02769___his 324 TGTAATGGCGAAT---------------CCGACATTTTCACAATACAAGC 358
BSNT_03364___ 359 ATAATGCGGTTATTGAAGGTGCTGAAGTGCGTGAAATTGCACTTCGTCCC 408
|.||.||.||.||.|||||.||.|||||..|.||| .|||.||.
BL02769___his 359 ACAACGCTGTCATCGAAGGAGCGGAAGTCAGAGAA-------GTCGGCCT 401
BSNT_03364___ 409 G-------ACGGCTCACATGATTTAGACGCCATGTTAGAA-GCCATCGAC 450
| ||||||..||.||..|.||.||.|||.| ||| ||.|||||.
BL02769___his 402 GCTCGAAAACGGCTGCCACGACCTTGATGCAATGCT-GAAGGCGATCGAT 450
BSNT_03364___ 451 GAACAGACACAAGTCGTTTGGATATGCAGCCCGAATAATCCGACTGGCAC 500
||||||||..|.||.||.|||.|.|||||||||||.||||||||.||.||
BL02769___his 451 GAACAGACGAAGGTTGTCTGGGTTTGCAGCCCGAACAATCCGACCGGAAC 500
BSNT_03364___ 501 TTATACATCTGAAGGAGAATTACTCGCATTTCTGGAGCGCG-TTCCTT-- 547
.|||..|||.| ..|||| .||.||.| || ||||||
BL02769___his 501 GTATGAATCCG-----------GCCGCA--ACTTGATC-CGTTTCCTTGA 536
BSNT_03364___ 548 -----------CACGTGTCCTTGTTGTTCTTGACGAAGCATATTATGAAT 586
.||.||||||||.|||..||||.|||||.|||||.||||
BL02769___his 537 AAAAGTGCCGGAACATGTCCTTGCTGTCGTTGATGAAGCTTATTACGAAT 586
BSNT_03364___ 587 ATGTAACAGCAGAGGATTACCCGGAAACCGTGCCGC-TCTTAAGCAAGTA 635
|.|||||.||.||.||.|||||.||.|||.|.|||| |||..||| |..
BL02769___his 587 ACGTAACGGCTGAAGACTACCCCGAGACCATCCCGCTTCTGGAGC--GCT 634
BSNT_03364___ 636 TTCC-AATTTGATGATTTTGCGCACATTTTCAAAGGCATACGGTCTGGCA 684
|||| ||..||||||||.|..|.||.||.|||||.||.||||||.||||.
BL02769___his 635 TTCCGAACCTGATGATTCTCAGGACGTTCTCAAAAGCCTACGGTTTGGCG 684
BSNT_03364___ 685 GCGCTCAGAGTCGGATACGGAATTGCTGACGAGAACCTGATTC--GCCAG 732
.|..|.||.||.||.|||||.||||||...||..|.||||||| || |
BL02769___his 685 TCTTTAAGGGTGGGCTACGGGATTGCTTCTGAACAGCTGATTCAGGC--G 732
BSNT_03364___ 733 ATTGAGCCGGCGAGAGAGCCGTTTAATACGAGCCGTCTGGGCCAGGCTGC 782
|||||||||||||||.|||||||||||||.|.|||.||.||||||||.||
BL02769___his 733 ATTGAGCCGGCGAGACAGCCGTTTAATACAAACCGGCTCGGCCAGGCGGC 782
BSNT_03364___ 783 GGCGATTGCCGCACTTGATGATCAAGCGTTTATTGCTTC--CTGTGTCGA 830
.|||.|||||||.||.|..|||||.||.||||| |..| |||||| ||
BL02769___his 783 CGCGCTTGCCGCCCTCGGCGATCAGGCATTTAT--CCACGACTGTGT-GA 829
BSNT_03364___ 831 G-CAAAATAATGCAGGCCTTCAGCAGTATTATGATTT-TGCGAAAACTCA 878
| .||||.||||.|||.||..|.|||||.||.||||| ||.||..| .||
BL02769___his 830 GAAAAAACAATGAAGGGCTCAAACAGTACTACGATTTCTGTGATGA-GCA 878
BSNT_03364___ 879 TGGTTTAAAGTGCTACCCTTCACAGACAAATTTTGTGTTAATTGACTTTA 928
.||..||||.|.|||.||||||||.||.||.||||||.|.|||||.||||
BL02769___his 879 CGGGCTAAATTACTATCCTTCACAAACGAACTTTGTGCTGATTGATTTTA 928
BSNT_03364___ 929 AACGTCCTGCTGATGAACTGTT-TCAG-GCTCTGCTGGAAAAAGGCTATA 976
||||...|||.||.|||||.|| |||| | ||||||.||||||||||||
BL02769___his 929 AACGGGATGCAGACGAACTTTTCTCAGAG--CTGCTGAAAAAAGGCTATA 976
BSNT_03364___ 977 TCGTCCGGTCAGGAAATGCATTAGGTTTCCCGACATCACTCCGGATTACG 1026
|||||.|.||.||.|||||..|.||.||.|||||.|..||..|.||..||
BL02769___his 977 TCGTCAGATCCGGGAATGCGCTCGGCTTTCCGACGTTCCTTAGAATATCG 1026
BSNT_03364___ 1027 ATCGGAACAAAAGAGCAAAATGAA--------GAAATACTTGCCATTTTA 1068
.||||.||.||.||.||.||.||| |||| |..|||
BL02769___his 1027 GTCGGTACGAAGGAACAGAACGAAGGCTTTTTGAAA--------ACGTTA 1068
BSNT_03364___ 1069 GCTGAAATTTTATAA 1083
||.|..||.||.|||
BL02769___his 1069 GCCGGCATGTTGTAA 1083
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