Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03360 and BL02765
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:05
# Commandline: needle
# -asequence dna-align/BSNT_03360___ypiA.1.5803.seq
# -bsequence dna-align/BL02765___ypiA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03360___ypiA-BL02765___ypiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03360___ypiA-BL02765___ypiA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03360___ypiA
# 2: BL02765___ypiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1356
# Identity: 918/1356 (67.7%)
# Similarity: 918/1356 (67.7%)
# Gaps: 165/1356 (12.2%)
# Score: 2959.5
#
#
#=======================================
BSNT_03360___ 1 TTGAATACATTGATTCAAGAAGCCATAAAATTAGTTGAAGCAGG------ 44
||||||||.|..||||||||||||||||||||||||||||||||
BL02765___ypi 1 TTGAATACTTCTATTCAAGAAGCCATAAAATTAGTTGAAGCAGGCCACCC 50
BSNT_03360___ 45 TGAAA-CAGA---AAAAGGCCTCAACACGC---TCTCGAAGGCTGAAAAA 87
.|||| |.|| |||| |||..|| |.||| ||.|||
BL02765___ypi 51 GGAAAGCGGATTGAAAA------AACTTGCTGATATCG-AGTCTG----- 88
BSNT_03360___ 88 CAGCTGCATGATGAAGATAAAGCCATTGCAGCCCAGCTTTATTACGAGTG 137
|.||.|||||||||||.||||||||.|.|||||||||.||||||||.||
BL02765___ypi 89 -ACCTTCATGATGAAGACAAAGCCATAGTAGCCCAGCTGTATTACGAATG 137
BSNT_03360___ 138 GGGCGATGTAGAAAAAGCAATTTCACTGATTAGTGATCTACATGATTTAT 187
|||...|||.||.||.||.||..|..|..|.|.|||.||.|||||..|.|
BL02765___ypi 138 GGGAATTGTCGATAAGGCTATCGCCATCGTGACTGACCTCCATGAACTGT 187
BSNT_03360___ 188 ATCCAAATGAAACAGAACTGACGAAT--TTCTACGCTGAACTTTTAATAG 235
||||..|||||||||||||||| || ||.||.||.|||||..|.||.|
BL02765___ypi 188 ATCCGGATGAAACAGAACTGAC--ATGCTTTTATGCCGAACTCCTCATCG 235
BSNT_03360___ 236 ATATTGACGAAGAAGAAAAAGCCCTC-GCTGTGCTGGAGACTATTCCGGA 284
|.|..||..|.|||||||||||.||| || |||||.||.||.||||||||
BL02765___ypi 236 AAACCGATCAGGAAGAAAAAGCGCTCAGC-GTGCTCGAAACGATTCCGGA 284
BSNT_03360___ 285 AACAGATCCA-TCATATCCGGAAAGTTTG-CTGCTT---ATGGCGGATCT 329
|||||| |.| .|.||.|||.| .|| |||||| |||||.|||||
BL02765___ypi 285 AACAGA-CGAGGCGTACCCGCA----GTGCCTGCTTTTAATGGCTGATCT 329
BSNT_03360___ 330 TTATCAGATGCAGGGGTTATTCGAAGTCAGTGAACAAAAGCTTTTACAGG 379
.||||||||||||||..|.||.||||||||.||.||||||||.|||.|||
BL02765___ypi 330 CTATCAGATGCAGGGTCTGTTTGAAGTCAGCGAGCAAAAGCTGTTAAAGG 379
BSNT_03360___ 380 C-AAAGTCCATTCTGGACAATGAACCTGTTATTGATTTTGCACTGGGAGA 428
| .||| |||||.||....||||.||.|||||.||||||||..|||||||
BL02765___ypi 380 CGCAAG-CCATTTTGCCGGATGAGCCGGTTATCGATTTTGCTTTGGGAGA 428
BSNT_03360___ 429 ACTTTACTTTGCTCAGGGAGCCTATGCAAAAGCGGT---TCAATATTTTA 475
.||.||.|||.||||||||||.||.|..|||||||| |||| ||.|
BL02765___ypi 429 GCTGTATTTTACTCAGGGAGCTTACGGCAAAGCGGTCCGTCAA---TTCA 475
BSNT_03360___ 476 AAACAACGGCTGAGGAGCAGAGTGAG-----ATCGGAGGCGTTAATGTCC 520
|||.|.||||.|| ||.||| || |||||.|||||.|||||..
BL02765___ypi 476 AAAAAGCGGCCGA--AGAAGA---AGCCGTCATCGGCGGCGTCAATGTGT 520
BSNT_03360___ 521 ATCAAAGACTGGCAGAATCGTTAAGTGCCTCAGGTGAATTTGAGGATGCC 570
|.|||||.|||||.|||||.||||||.|.||.||.|..|||||.||.||.
BL02765___ypi 521 ACCAAAGGCTGGCGGAATCATTAAGTTCATCCGGAGCGTTTGAAGAAGCG 570
BSNT_03360___ 571 ATTCCATGGTATGAGAAAGCTGTCGATGAGAATCCTGATCCTAATACGAT 620
.||..|||||||||.|||||.|||.|.|||||.||.||.||.||.||..|
BL02765___ypi 571 CTTGAATGGTATGAAAAAGCCGTCAAGGAGAACCCCGAGCCCAACACACT 620
BSNT_03360___ 621 TTTCGGCTATGGTTTTACAGC-CTTACAGGCGGGG----CTTGTGAAAAC 665
.|||||||.|||||||||.|| ||.| |.|||||| || |||||
BL02765___ypi 621 GTTCGGCTTTGGTTTTACGGCACTGA-AAGCGGGGTATCCT----AAAAC 665
BSNT_03360___ 666 AGCTATTAAGCAGCTGTCTGATTTAAAGGAGCTTGATCCATCTTATACTT 715
.||.|||||.||||||.|.||..|.|||||..|.|||||..|||||.|||
BL02765___ypi 666 TGCGATTAAACAGCTGACAGAGCTGAAGGAAATGGATCCCGCTTATTCTT 715
BSNT_03360___ 716 CACTTTATATGCCGCTCTCGAAAAGCTATGAAGCTGAAGGGGTGTATGAA 765
|.|||||.|.|||.||..|.||.||||.||||.|.||||||.|.|||||.
BL02765___ypi 716 CGCTTTACAAGCCTCTGGCCAACAGCTTTGAAACAGAAGGGCTTTATGAG 765
BSNT_03360___ 766 GAGGCATTAAAAACGGCAAAAGAGGGGATCAGATAT-GATGAATATAACA 814
||.|||||..|||||||||||||.||.|||.| |.| |||||||..||||
BL02765___ypi 766 GAAGCATTCGAAACGGCAAAAGAAGGAATCCG-TGTCGATGAATTCAACA 814
BSNT_03360___ 815 AAGAACTTTTCCTTTATGCCGCCAAAATGGCCTTGAAAATCG----GGAA 860
||||.||||..||||.|||.||.|||...||||| ||||.|| ||.|
BL02765___ypi 815 AAGAGCTTTATCTTTCTGCTGCAAAAGCAGCCTT-AAAAACGAAAAGGCA 863
BSNT_03360___ 861 GTCAGAAGAGGGGAAAAAGCTGCTTCAGGAGGCGCTTGCGCTTGATCCGG 910
.||.||| |.|||..|||||||||..||.|||||.|||||.|||||.|
BL02765___ypi 864 TTCGGAA---GCGAAGGAGCTGCTTCGTGAAGCGCTGGCGCTGGATCCCG 910
BSNT_03360___ 911 GCTTTGTCGAGGCGCTTCATACACTTCTTGCCGTGTATCACAAAGAAGAG 960
|.|.|.|.||.||..||||||||||.||||||.|||.||...|||||||.
BL02765___ypi 911 GATATCTGGAAGCCGTTCATACACTGCTTGCCCTGTTTCTTGAAGAAGAA 960
BSNT_03360___ 961 GATTATGATCAG-ATCATTGATCTTATTCAAGAGGTTCGAAGCTACGGTG 1009
||..|||| .|| ||||||||.||..|||..||.||.||.|..|||||.|
BL02765___ypi 961 GACGATGA-GAGCATCATTGAACTCGTTCGGGAAGTGCGCAAATACGGAG 1009
BSNT_03360___ 1010 AAGAAGATCCTAAATACAATTGGTATCTTGC------------------- 1040
|.||.|||||.||.|.||..|||.||||.||
BL02765___ypi 1010 AGGATGATCCGAAGTTCAGCTGGCATCTGGCATCGGCGTTCGCCCGGACC 1059
BSNT_03360___ 1041 -AAGCGCATATACTGAATTAGAGCAATA-----CGAGGAAGCAAAACAAT 1084
||||| ||| || ||| | |||||||
BL02765___ypi 1060 GAAGCG----TAC-------GA-CAA-AGCCCGCGAGGAA---------- 1086
BSNT_03360___ 1085 CCTTTGAGGCTGCCTATCTTCATTACCGGGAGGATAGAGATTTCTTATAT 1134
|.||||...||.|.|.|.||.||.|||||.||....||||||.|.||.
BL02765___ypi 1087 --TATGAGAACGCATTTTTGCACTATCGGGATGACGCCGATTTCCTTTAC 1134
BSNT_03360___ 1135 GAATACGCAAGCTTCCTATTAGAAGAAGGTCTTCAAAAAGAAGCGCTGCC 1184
|||||..|.|..||.||..|.||||||||.|..|..||||||||||||||
BL02765___ypi 1135 GAATATTCCATGTTTCTGCTTGAAGAAGGACGGCGGAAAGAAGCGCTGCC 1184
BSNT_03360___ 1185 GCTTTTGAAAAAGGTTCTTGAAATGGACGGAGC---------CAATGAAG 1225
.||..|||||| ||.||| |.|||| ||| |.|
BL02765___ypi 1185 TCTGCTGAAAA---------AACTGG-CAGAGCTCGACCCGGCAA--ACG 1222
BSNT_03360___ 1226 AGCTTGAA------GAAACGATTTTGCGAATCGAGGATGAATTTTC---T 1266
|| ||| ||.||||||||..|||||||.||||||..||| |
BL02765___ypi 1223 AG---GAAGTCCAGGAGACGATTTTCAGAATCGAAGATGAAAATTCCTTT 1269
BSNT_03360___ 1267 AGATAA 1272
..||||
BL02765___ypi 1270 GAATAA 1275
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