Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03345 and BL02755

See Amino acid alignment / Visit BSNT_03345 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_03345___ypjH.1.5803.seq
#    -bsequence dna-align/BL02755.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03345___ypjH-BL02755.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03345___ypjH-BL02755.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03345___ypjH
# 2: BL02755
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1239
# Identity:     837/1239 (67.6%)
# Similarity:   837/1239 (67.6%)
# Gaps:         162/1239 (13.1%)
# Score: 2843.5
# 
#
#=======================================

BSNT_03345___      1 ATGAGAAAACTAAAAATAGGAATCACATGCTATCCGAGCGTTGGAGGCTC     50
                     ||||.|.|..|||||||.|||||||||||.||||||||.||.||.||.||
BL02755            1 ATGAAACAGTTAAAAATCGGAATCACATGTTATCCGAGTGTCGGCGGATC     50

BSNT_03345___     51 AGGTATCATTGCGACAGAACTGGGGAAGCAGCTTGCTGAAAAGGGACATG    100
                     |||.||.||.||.||.||.||.||.||||.||||||.|||||.|||||||
BL02755           51 AGGAATTATCGCCACCGAGCTCGGCAAGCTGCTTGCGGAAAAAGGACATG    100

BSNT_03345___    101 AAATCCATTTCATCACATCAAGCATTCCGTTTAGACTGAATACA-TATCA    149
                     ||||.|||||.||.||||||||..||||||..||.||.||||.| |.| |
BL02755          101 AAATTCATTTTATTACATCAAGTGTTCCGTACAGGCTCAATAAAGTGT-A    149

BSNT_03345___    150 TCCCAATATTCATTTTCATGAAGTTGAGGTTAATCAATATGCTGTTTTTA    199
                     |.||||.||..|||||||.|||||.||.||.|||||||||||.|||||||
BL02755          150 TTCCAACATCTATTTTCACGAAGTCGAAGTCAATCAATATGCCGTTTTTA    199

BSNT_03345___    200 AGTATCCTCCGTATGATTTGACATTGGCAAGCAAAATCGCAGAGGTGGCG    249
                     ||||.||.||||||||||||.|.|||||.||||||||.||.||||||||.
BL02755          200 AGTACCCGCCGTATGATTTGGCTTTGGCCAGCAAAATGGCGGAGGTGGCA    249

BSNT_03345___    250 GAACGGGAGAATTTAGACATTATCCATGCTCACTATGCTCTCCCGCATGC    299
                     .|.|||||..|..|.||..||.|.|||||.|||||.||..|.||.||.||
BL02755          250 AAGCGGGAACAGCTTGATGTTCTGCATGCCCACTACGCGGTGCCTCACGC    299

BSNT_03345___    300 CGTTTGCGCCTATCTTGCAAAACAAATGCTGAAACGCAATATCGGCATT-    348
                     ..|||.|||.|.|.|.||.||.|||||||||||..|.||      |||| 
BL02755          300 GATTTCCGCTTTTTTAGCGAAGCAAATGCTGAACGGAAA------CATTA    343

BSNT_03345___    349 -----GTTACAACTTTGCATGGCACGGATATCACGGTGTTAGGTTATGAT    393
                          ||.|||||..||||.|||||.|||||.||.|||.|.||.||||||
BL02755          344 AAACGGTCACAACGCTGCACGGCACAGATATAACCGTGCTCGGCTATGAT    393

BSNT_03345___    394 CCGTCTCTAAAAGATCTGATCCGTTTTGCTATTGAGTCATCAGACAGGGT    443
                     ||||||.|||||||.||||||...|||||.||.||.||.||.|||.|.||
BL02755          394 CCGTCTTTAAAAGACCTGATCAAGTTTGCGATCGAATCGTCTGACCGCGT    443

BSNT_03345___    444 GACGGCCGTCTCCTCAGCGCTTGCGGCTGAAACGTACGATTTAATTAAAC    493
                     .||.||.||.||.||.||.|||||.||..|||||||.|||||.||.||||
BL02755          444 TACCGCGGTTTCTTCGGCTCTTGCCGCGCAAACGTATGATTTGATCAAAC    493

BSNT_03345___    494 CGGAGAAAAAAATTGAAACGATTTATAACTTTATAGACGAGCGCGTGTAT    543
                     ||.|.|||||||||||||||||.|||||.|||.|.||.||||||||||||
BL02755          494 CGAACAAAAAAATTGAAACGATCTATAATTTTGTGGATGAGCGCGTGTAT    543

BSNT_03345___    544 CTGAAGAAAAACACAGCGG--TGATT-----AAAGAGAAACATGGAATTT    586
                     .|    |||||.||||..|  |.|||     ||||||.|..|.||.|||.
BL02755          544 TT----AAAAAAACAGGAGCATCATTCGCTGAAAGAGCAGTACGGCATTG    589

BSNT_03345___    587 TACCAGATGAAAAAGTCGTCATCCATGTGTCCAACTTTAGAAAGGTTAAA    636
                     .|||.|||||||||||..|||||||.||.|||||.||.|||.||||.||.
BL02755          590 CACCTGATGAAAAAGTGATCATCCACGTATCCAATTTCAGACAGGTGAAG    639

BSNT_03345___    637 CGCGTGCAGGACGTCATCCGTGTGTTCCGCAATATCGC--TGGCA---AA    681
                     |||||.|||||.|||||||.|||.|||.||     |||  ||.||   ||
BL02755          640 CGCGTACAGGATGTCATCCATGTATTCAGC-----CGCATTGTCAAACAA    684

BSNT_03345___    682 ACGAAAGCGAAGCTGCTTTTAGTCGGAGACGGTCCGGAGAAATCGACAG-    730
                     |.||||.||||||||.||.|.|||||.|||||.|||  ||||| |||.| 
BL02755          685 ATGAAATCGAAGCTGATTCTCGTCGGCGACGGGCCG--GAAAT-GACCGT    731

BSNT_03345___    731 --CCTGCGAGCTTATCAGAAAATATGGCTTGG-----AAGACCAAG-TCT    772
                       .||||.|||||.|||||.|     |||.||     |||||.|.| |||
BL02755          732 GATCTGCCAGCTTGTCAGACA-----GCTCGGATTAAAAGACGACGTTCT    776

BSNT_03345___    773 TAATGCTTGGAAATCAAGACCGTGTTGAAGAGCTTTATTCTATTAGCGAT    822
                     | .|.|||||.||.||||||.|.||.|||||||||||..|.||.||||||
BL02755          777 T-TTCCTTGGCAAACAAGACAGCGTAGAAGAGCTTTACGCCATCAGCGAT    825

BSNT_03345___    823 TTGAAGCTGCTGCTATCTGAAAAAGAAAGCTTTGGCCTTGTCCTGCTTGA    872
                     ||.||||||||..|.||.||.||.||||||||.||..|.||.||||||||
BL02755          826 TTAAAGCTGCTTTTGTCCGAGAAGGAAAGCTTCGGTTTAGTGCTGCTTGA    875

BSNT_03345___    873 AGCGATGGCTTGCGGAGTGCCTTGTATTGGAACAAACATTGGCGGTATCC    922
                     |||||||||.|||||.||.||.||.||.||.|||||.||.||.||.||.|
BL02755          876 AGCGATGGCCTGCGGCGTTCCGTGCATCGGCACAAATATCGGGGGGATTC    925

BSNT_03345___    923 CTGAGGTTATAAAAAACAATGTGAG----CGGATTTTTGGTGGATGTCGG    968
                     |.|||||.||.||||||    .|||    |||.|..|||||.||||||||
BL02755          926 CCGAGGTGATCAAAAAC----GGAGTATCCGGTTACTTGGTCGATGTCGG    971

BSNT_03345___    969 TGATGTT-ACGGCCGCAAC-----AGCCCGCGCGATGAGCATTTTAGAA-   1011
                     .|||.|| |.|| .|||.|     ||   ||||    ..|||||    | 
BL02755          972 AGATATTGAAGG-TGCAGCTAGTAAG---GCGC----TTCATTT----AC   1009

BSNT_03345___   1012 -----GATGAA------CAGCTAAGCAATCGTTTTACAAAGGCGGCAATA   1050
                          ||||||      ||||   ||   |..|||.|..|.|||||    
BL02755         1010 TGACTGATGAAAGCCTGCAGC---GC---CAGTTTGCGGAAGCGGC----   1049

BSNT_03345___   1051 GAGATGCTTGAA------AATGAA---TTTTCTTCTAAAAAAATTGTCAG   1091
                          |||..||      ||.|||   ||||||||.||.|||||..|| |
BL02755         1050 -----GCTGCAAAGCATCAAGGAACGCTTTTCTTCCAACAAAATCATC-G   1093

BSNT_03345___   1092 C-CAGTATGAACAGATTTATGCCGATTTAGCAGAACCGGAGTGA------   1134
                     | ||.||||||.|.||||||....|.|||.||||...||||||.      
BL02755         1094 CGCAATATGAAGAAATTTATCAACAATTAACAGACTGGGAGTGTGACAAT   1143

BSNT_03345___   1134 ---------------------------------------   1134
                                                            
BL02755         1144 GGAGGATCTCTTTTTGAAGGCTCTTCCTCTCCTTCGTGA   1182


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