Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03335 and BL02747
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:01
# Commandline: needle
# -asequence dna-align/BSNT_03335___ypmB.1.5803.seq
# -bsequence dna-align/BL02747___ypmB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03335___ypmB-BL02747___ypmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03335___ypmB-BL02747___ypmB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03335___ypmB
# 2: BL02747___ypmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 517
# Identity: 358/517 (69.2%)
# Similarity: 358/517 (69.2%)
# Gaps: 62/517 (12.0%)
# Score: 1124.0
#
#
#=======================================
BSNT_03335___ 1 ATGAGAAAAAAAGCATTAATATT--TACCGTCATTTTTGGTATTATTTTT 48
|||.|.||||||.|||||||.|| ||| |.||.|||||||||||.|||
BL02747___ypm 1 ATGGGCAAAAAAACATTAATTTTCATAC--TGATATTTGGTATTATCTTT 48
BSNT_03335___ 49 TTAGCAGTACTTCTTGTCTCGGCAAGC--ATTTATA----AATCAGCCAT 92
|||.|||.|||||||| ||| .||| ||.|.|| | |.||.||
BL02747___ypm 49 TTAACAGCACTTCTTG---CGG-GAGCGAATGTCTACCGTA--CGGCAAT 92
BSNT_03335___ 93 GGCACAAAAGGAAGAGGGGCACGAAGCAGCAGCTGCTGA---AGCTAAAA 139
||..||.||.|||.|.||.|||| ||||| |||||.|| |||.|...
BL02747___ypm 93 GGATCAGAAAGAAAACGGCCACG-AGCAG--GCTGCCGAAACAGCCAGGC 139
BSNT_03335___ 140 AAGAAACCGATCTCGC------CAATGTTGATCA-AGTCGAAACATTTGT 182
|.|||.||| || ||| ||||| || .||.||.||.|||||
BL02747___ypm 140 AGGAAGCCG-----GCTTAAAACAA-GTTGA-CAGCGTGGAGACGTTTGT 182
BSNT_03335___ 183 CGGAAAAGAAAAATATTATGTTG-TAAAGGGAACGGATAAAAAAGGC--- 228
|||.||||||||..|.||..||| ||.|||| .|.||.|||||||||
BL02747___ypm 183 CGGTAAAGAAAAGCAGTACATTGTTACAGGG-GCAGACAAAAAAGGCGAC 231
BSNT_03335___ 229 --ACTGCGTTATATGTCTGGGTTCCTGCTGATAAAAAAGCA-AAAATTCT 275
|.|| |||||.|||||.|||||||| .|||||||| ||||..||
BL02747___ypm 232 AAAATG-----TATGTTTGGGTGCCTGCTGA-CAAAAAGCAGAAAACGCT 275
BSNT_03335___ 276 CT-CAAAAGAAGCGAAAGAGGGAATCTCTGAAGACAAAGCGGCGAAAA-- 322
.| ||||| ||||...||..||.||..|.|....|.|.||.|| ||||
BL02747___ypm 276 TTACAAAA-AAGCATCAGCCGGCATTACCGGCCGCCAGGCTGC-AAAAGC 323
BSNT_03335___ 323 ---TCATAAAGGATGAAGGGCTGGTTTCAAAGCAAAAAGAGGTTCATCTG 369
|| |||||||.||.|||.|.||..|||..||||||||.||.||.
BL02747___ypm 324 TGTTC----AGGATGAGGGCCTGATGTCTGAGCTTAAAGAGGTGCACCTT 369
BSNT_03335___ 370 GCAAGAGAAGGAAACGTCCTGCTTTGGGAAGTGACGTACTTAGACAAAGA 419
|||||.|||||.||.||.||..|.||||||||.||.||||||.|.|||||
BL02747___ypm 370 GCAAGGGAAGGCAATGTTCTATTGTGGGAAGTTACATACTTAAATAAAGA 419
BSNT_03335___ 420 AGGGCAATACAGTTTAAGTTATGTGGACTTTACAACTGGAAAGATTCTCA 469
.|||||.|||||||||||.|||||||||||||.||..|||||.||||.||
BL02747___ypm 420 TGGGCAGTACAGTTTAAGCTATGTGGACTTTATAAACGGAAAAATTCACA 469
BSNT_03335___ 470 AAAATATCACGCCTTAA 486
|||||||.||||||||.
BL02747___ypm 470 AAAATATTACGCCTTAG 486
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