Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03328 and BL02742
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:01
# Commandline: needle
# -asequence dna-align/BSNT_03328.1.5803.seq
# -bsequence dna-align/BL02742.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03328-BL02742.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03328-BL02742.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03328
# 2: BL02742
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity: 299/540 (55.4%)
# Similarity: 299/540 (55.4%)
# Gaps: 156/540 (28.9%)
# Score: 880.5
#
#
#=======================================
BSNT_03328 1 ----------------------------ATGAAGAAAACCTTGC------ 16
|.||| |||||..|||
BL02742 1 GTGACAAGCGTTTCACTGTTGGACGAATACGAA-AAAACGCTGCGGAAGA 49
BSNT_03328 17 --AGACC--AATCC-------------CGTGTATTT-------------- 35
||.|| ||||| || |||.||
BL02742 50 AAAGGCCGGAATCCGGCGAAAGGCTTGCG-GTACTTTCTGAAAATCCGCT 98
BSNT_03328 36 ------TGATTTCT--------GCACGGA-ATTACAAGGCGATTTGCCAT 70
||||||.| ||| ||| |..|||| |||.|
BL02742 99 CTGCTATGATTTTTTTCAAGACGCA-GGAGAGGACAA--------GCCTT 139
BSNT_03328 71 GGGAGGACA-GCGGGA-AATACGTTCCGCTTTTATTTGAAGTGTGGGATG 118
||||| || ||||.| |||..||.||||||.|.||||.||..|||||..
BL02742 140 GGGAG--CATGCGGAAGAATGGGTCCCGCTTCTGTTTGCAGAATGGGAAC 187
BSNT_03328 119 ACATCAAAGCATCACTTCTCCCAGTCTTTCAAACACGAAAATCGAGATGT 168
.||..||||.|...|||||.||.||||||.||||..|||||||.||.||.
BL02742 188 GCACAAAAGAAAAGCTTCTGCCCGTCTTTAAAACGAGAAAATCAAGGTGC 237
BSNT_03328 169 GACCAAAACGAAATGTTAAA--GGGCATTGTG-TGTTTGCT-----GGCT 210
..|||..|.||.|||.|.|| ||| |||| ||.|||.| |.||
BL02742 238 AGCCAGGATGACATGCTCAACGGGG---TGTGCTGCTTGATCGCAAGCCT 284
BSNT_03328 211 TCGTTACATTGGACAGCAGGTGAGCCGGTGAAATCGCTCGATTGGCAAGA 260
| ||.|||||....||.|||||.||.|||...||| |
BL02742 285 T-----CACTGGACGATGGGGGAGCCTGTCAAAAGTCTC----------A 319
BSNT_03328 261 ACTGAGGGAGAAATCATATCCC--------------GCAAAGCCGATTAA 296
||| ||||| |||||..||| |||||||||||.||
BL02742 320 ACT--GGGAG--ATCATCACCCGGAAGGATTTTGGAGCAAAGCCGATGAA 365
BSNT_03328 297 TTGGGCTGAACGAGTGGAATTTATTCTTCTTAAGCCGACCCAATACCATT 346
.|||.|.|||||..|.||.||.||.||.||.||.|||||.||.|||||||
BL02742 366 CTGGACGGAACGGCTCGAGTTCATCCTGCTGAAACCGACGCAGTACCATT 415
BSNT_03328 347 GCTTTATTCAGCTTGATGAGCTGATTACCGAAATGAAAAAGCATTTTTAT 396
|.|||||.||||||||.||..||.||||.||||||||||||||.||||||
BL02742 416 GTTTTATCCAGCTTGACGAATTGTTTACGGAAATGAAAAAGCAATTTTAT 465
BSNT_03328 397 AAATATCATGCGATGAATCGATAA---------------- 420
||||||..|||.||||||| ||||
BL02742 466 AAATATGTTGCCATGAATC-ATAAAAAAGCCACTCACTAA 504
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