Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03311 and BL02737

See Amino acid alignment / Visit BSNT_03311 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_03311___ypqE.1.5803.seq
#    -bsequence dna-align/BL02737___ypqE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03311___ypqE-BL02737___ypqE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03311___ypqE-BL02737___ypqE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03311___ypqE
# 2: BL02737___ypqE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 587
# Identity:     372/587 (63.4%)
# Similarity:   372/587 (63.4%)
# Gaps:         109/587 (18.6%)
# Score: 1218.5
# 
#
#=======================================

BSNT_03311___      1 GTGGTGAATGAAGGGATAACGGTTGAAGTGAATGAGAAGGGAGAAAATAC     50
                                                                       
BL02737___ypq      0 --------------------------------------------------      0

BSNT_03311___     51 ATTGCTGAAAAAATTATTCGG-AATGGGCAAAACTCAGGAAAAGGTGACA     99
                      |||||||||||||||||||| |.|||.||||| .||.||..|.||||.|
BL02737___ypq      1 -TTGCTGAAAAAATTATTCGGTATTGGTCAAAA-ACAAGATGAAGTGAAA     48

BSNT_03311___    100 GAAGAGGTTA----TTTATTCTCCGGCAGACGGTAC-AGTAATGGACCTG    144
                     |||||    |    |||.|||.||||..||||| || |||..||||.||.
BL02737___ypq     49 GAAGA----AACCGTTTTTTCACCGGTTGACGG-ACAAGTTTTGGAACTT     93

BSNT_03311___    145 TCAGATGTGCCGGACCCTGTTTTTTCACAGAAAATGATGGGAGAAGGAAT    194
                     |||.|.||.||.|||||.|||||.||.||.||.||||||||.||.|||||
BL02737___ypq     94 TCAAAAGTTCCTGACCCCGTTTTCTCTCAAAAGATGATGGGTGACGGAAT    143

BSNT_03311___    195 AGCGGTGGAACCTTCTAGC-GGTGAAATCGTTTCTCCCGCTGAAGGTGAA    243
                     .||.||.||.||||| .|| ||.||.|||||.||.||.|..||.||.|||
BL02737___ypq    144 GGCTGTCGAGCCTTC-CGCGGGCGAGATCGTATCGCCTGTCGACGGGGAA    192

BSNT_03311___    244 GTCATTCAGATTTTCCACACCAAACACGCCGTTGGCATTCGGAC-TCGCT    292
                     ||.||.|||.|.||||||||.|||||||||.|.||||||||..| |.| |
BL02737___ypq    193 GTGATCCAGCTGTTCCACACAAAACACGCCATAGGCATTCGTTCATTG-T    241

BSNT_03311___    293 CGGGAATTGAGCTGTTAATTCATGTCGGGCTGGAGACAGT--CAATATGA    340
                     |.||..|.|||||.||.|||||..||||.|||||.||.||  ||  |||.
BL02737___ypq    242 CCGGCGTGGAGCTCTTGATTCACATCGGTCTGGAAACCGTAGCA--ATGG    289

BSNT_03311___    341 ACGGAGAAGGATTTACTGCCCACATTAAAGAAGGGGATAAAGTGAAGGTC    390
                     |.||.|||||.||.||.|||||..|.||||||||.||.|||||.||.|||
BL02737___ypq    290 AAGGCGAAGGTTTCACAGCCCATGTCAAAGAAGGAGACAAAGTAAAAGTC    339

BSNT_03311___    391 GGTGACCCGCTGATTACATGTGATTTGGAATTAATAAAAGAAAAAGCGAG    440
                     ||.||.||..|.||.|||||.|||||||||.|.||.||.|||||||||||
BL02737___ypq    340 GGCGATCCTTTAATAACATGCGATTTGGAACTGATCAAGGAAAAAGCGAG    389

BSNT_03311___    441 CAGCACAGTCATCCCAATCGTTATAATGAATGGTGAGGCTGTAGGA----    486
                     |||||||.|.|..||.|||||.||.|||||.||.||.| |||.|||    
BL02737___ypq    390 CAGCACAATTACGCCGATCGTCATTATGAACGGCGATG-TGTTGGAACGC    438

BSNT_03311___    487 -TCA------ATGGTACCGGCAG--GCGAAAAGGCTGCTCGTAAAGGCGA    527
                      |||      || |.|..|||||  ||||||           |||.||||
BL02737___ypq    439 GTCACAAAACAT-GAAGAGGCAGCAGCGAAA-----------AAAAGCGA    476

BSNT_03311___    528 ATCAAAGCTC------CTTACAATAAAAGCGAAATAA    558
                     ..||||||||      ||||.|.||||   |.||   
BL02737___ypq    477 GACAAAGCTCATGGAGCTTAAAGTAAA---GTAA---    507


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