Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03311 and BL02737
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_03311___ypqE.1.5803.seq
# -bsequence dna-align/BL02737___ypqE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03311___ypqE-BL02737___ypqE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03311___ypqE-BL02737___ypqE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03311___ypqE
# 2: BL02737___ypqE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 587
# Identity: 372/587 (63.4%)
# Similarity: 372/587 (63.4%)
# Gaps: 109/587 (18.6%)
# Score: 1218.5
#
#
#=======================================
BSNT_03311___ 1 GTGGTGAATGAAGGGATAACGGTTGAAGTGAATGAGAAGGGAGAAAATAC 50
BL02737___ypq 0 -------------------------------------------------- 0
BSNT_03311___ 51 ATTGCTGAAAAAATTATTCGG-AATGGGCAAAACTCAGGAAAAGGTGACA 99
|||||||||||||||||||| |.|||.||||| .||.||..|.||||.|
BL02737___ypq 1 -TTGCTGAAAAAATTATTCGGTATTGGTCAAAA-ACAAGATGAAGTGAAA 48
BSNT_03311___ 100 GAAGAGGTTA----TTTATTCTCCGGCAGACGGTAC-AGTAATGGACCTG 144
||||| | |||.|||.||||..||||| || |||..||||.||.
BL02737___ypq 49 GAAGA----AACCGTTTTTTCACCGGTTGACGG-ACAAGTTTTGGAACTT 93
BSNT_03311___ 145 TCAGATGTGCCGGACCCTGTTTTTTCACAGAAAATGATGGGAGAAGGAAT 194
|||.|.||.||.|||||.|||||.||.||.||.||||||||.||.|||||
BL02737___ypq 94 TCAAAAGTTCCTGACCCCGTTTTCTCTCAAAAGATGATGGGTGACGGAAT 143
BSNT_03311___ 195 AGCGGTGGAACCTTCTAGC-GGTGAAATCGTTTCTCCCGCTGAAGGTGAA 243
.||.||.||.||||| .|| ||.||.|||||.||.||.|..||.||.|||
BL02737___ypq 144 GGCTGTCGAGCCTTC-CGCGGGCGAGATCGTATCGCCTGTCGACGGGGAA 192
BSNT_03311___ 244 GTCATTCAGATTTTCCACACCAAACACGCCGTTGGCATTCGGAC-TCGCT 292
||.||.|||.|.||||||||.|||||||||.|.||||||||..| |.| |
BL02737___ypq 193 GTGATCCAGCTGTTCCACACAAAACACGCCATAGGCATTCGTTCATTG-T 241
BSNT_03311___ 293 CGGGAATTGAGCTGTTAATTCATGTCGGGCTGGAGACAGT--CAATATGA 340
|.||..|.|||||.||.|||||..||||.|||||.||.|| || |||.
BL02737___ypq 242 CCGGCGTGGAGCTCTTGATTCACATCGGTCTGGAAACCGTAGCA--ATGG 289
BSNT_03311___ 341 ACGGAGAAGGATTTACTGCCCACATTAAAGAAGGGGATAAAGTGAAGGTC 390
|.||.|||||.||.||.|||||..|.||||||||.||.|||||.||.|||
BL02737___ypq 290 AAGGCGAAGGTTTCACAGCCCATGTCAAAGAAGGAGACAAAGTAAAAGTC 339
BSNT_03311___ 391 GGTGACCCGCTGATTACATGTGATTTGGAATTAATAAAAGAAAAAGCGAG 440
||.||.||..|.||.|||||.|||||||||.|.||.||.|||||||||||
BL02737___ypq 340 GGCGATCCTTTAATAACATGCGATTTGGAACTGATCAAGGAAAAAGCGAG 389
BSNT_03311___ 441 CAGCACAGTCATCCCAATCGTTATAATGAATGGTGAGGCTGTAGGA---- 486
|||||||.|.|..||.|||||.||.|||||.||.||.| |||.|||
BL02737___ypq 390 CAGCACAATTACGCCGATCGTCATTATGAACGGCGATG-TGTTGGAACGC 438
BSNT_03311___ 487 -TCA------ATGGTACCGGCAG--GCGAAAAGGCTGCTCGTAAAGGCGA 527
||| || |.|..||||| |||||| |||.||||
BL02737___ypq 439 GTCACAAAACAT-GAAGAGGCAGCAGCGAAA-----------AAAAGCGA 476
BSNT_03311___ 528 ATCAAAGCTC------CTTACAATAAAAGCGAAATAA 558
..|||||||| ||||.|.|||| |.||
BL02737___ypq 477 GACAAAGCTCATGGAGCTTAAAGTAAA---GTAA--- 507
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