Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03306 and BL02735

See Amino acid alignment / Visit BSNT_03306 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence dna-align/BSNT_03306___yprB.1.5803.seq
#    -bsequence dna-align/BL02735___yprB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03306___yprB-BL02735___yprB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03306___yprB-BL02735___yprB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03306___yprB
# 2: BL02735___yprB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity:     870/1430 (60.8%)
# Similarity:   870/1430 (60.8%)
# Gaps:         304/1430 (21.3%)
# Score: 2465.0
# 
#
#=======================================

BSNT_03306___      1 ATGTCATTAAAAGGGAAACTCCAGCG-GATGAAAAAGCACATGGCGCTCG     49
                     |||||.||||||.|.|||||..|.|| .|| ||..|.|||.|||     |
BL02735___ypr      1 ATGTCTTTAAAACGAAAACTTAATCGCTAT-AAGCATCACCTGG-----G     44

BSNT_03306___     50 A-------CGAAGGAGAACAAAAAATAGAA------GCAGGCAAACAAGA     86
                     |       ||||  ||||.||||||..|||      ||||..||      
BL02735___ypr     45 AAATCAAGCGAA--AGAAGAAAAAACGGAACCTCCCGCAGATAA------     86

BSNT_03306___     87 AAACCACTTTGATGACATC-----CCGT---TTTT--AGAAGAGTGGGAG    126
                               |.||||.||     ||||   ||||  |.||||.||||..
BL02735___ypr     87 ----------GCTGACTTCCTTGTCCGTCAGTTTTGAAAAAGAATGGGCC    126

BSNT_03306___    127 GCTTTTGGCATGAAGCCTTTCATCTTCGAAG-ATGAATATTGCCTCATCA    175
                     |...|.||..|.||.||.|...|.||.||.| ||| .||||||||.||||
BL02735___ypr    127 GAACTCGGTGTTAAACCATATGTGTTTGAGGAATG-CTATTGCCTGATCA    175

BSNT_03306___    176 GAGAAGTAGAATATCCGCTTTCTCACCGCCATGGGTTA-TACAGC-TTTT    223
                     |.|||||.|..||.|||.|..||||....||| |||.| ||| || ||||
BL02735___ypr    176 GGGAAGTCGTTTACCCGTTGACTCATGTTCAT-GGTCATTAC-GCGTTTT    223

BSNT_03306___    224 CTGAGCT---TGAGGAAGTGATCACACTG--------TGGAATCAA-AGC    261
                     |||||||   ||||           ||.|        ||||| ||| |||
BL02735___ypr    224 CTGAGCTGCATGAG-----------ACGGTTAGGCGATGGAA-CAACAGC    261

BSNT_03306___    262 GGCCTGTCGCATACGTTGTC-AGCAAAAGGGTATAACAAA---AACAACC    307
                     |.|.|.||.|||.||.|.|| ||| |||||||   |||.|   |.|.|.|
BL02735___ypr    262 GCCGTTTCCCATTCGCTTTCAAGC-AAAGGGT---ACACACCGAGCCAGC    307

BSNT_03306___    308 TCTTTTTCTTTGATACAGAAACAACCGGTCTTGGGGGCGGAGCTGGGAAT    357
                     ||||.|||||||||||.|||||.||||||||.||.|||||.||.||.|||
BL02735___ypr    308 TCTTCTTCTTTGATACGGAAACGACCGGTCTCGGAGGCGGGGCCGGCAAT    357

BSNT_03306___    358 ACCATTTTTTTGCTTGGGCATGCGAGAGTATATGAAGACCGAGT-GACAG    406
                     .|.||.||||||||.||.|||||.||.||.|||||.|||||.|| |.| |
BL02735___ypr    358 GCGATCTTTTTGCTCGGCCATGCAAGGGTGTATGACGACCGCGTAGTC-G    406

BSNT_03306___    407 TCAAACAGCATCTTTTGCCCAAACCGGGGAACGAAGTCGCCTTGTACCAA    456
                     |||||||||||||..||||.||.||||||.||||||.||||.|.||.||.
BL02735___ypr    407 TCAAACAGCATCTGCTGCCAAAGCCGGGGTACGAAGCCGCCCTCTATCAC    456

BSNT_03306___    457 AGCTTTTTAAGCGAGGTTGACATTACA-TCACTTGTGACCTACAACGGCA    505
                     ||||||.|.||.||.||.||.||| || ||.|||||.|||||.|||||||
BL02735___ypr    457 AGCTTTCTGAGTGAAGTCGATATT-CAGTCTCTTGTCACCTATAACGGCA    505

BSNT_03306___    506 AAGCCTTTGATTGGCCGCAGGTGAAAACAAGGCACACCTTGATCCGTGAC    555
                     ||||.||.||.|||||.|||||||||||.||||||||..|||||||.|||
BL02735___ypr    506 AAGCGTTCGACTGGCCCCAGGTGAAAACGAGGCACACGCTGATCCGCGAC    555

BSNT_03306___    556 AGACTTCCGAAGCTTCCGGAGTTTGGCCACTTTGATCTTTTGCATGGAGC    605
                     ||..|.||.|||||||||||.||.|||||||||||.||..||||.|||.|
BL02735___ypr    556 AGGGTCCCAAAGCTTCCGGATTTCGGCCACTTTGACCTGCTGCACGGATC    605

BSNT_03306___    606 TAGACGCCTGTGGAAACACAAAATGGACCGTGTATCTCTT-GGCACGGTT    654
                     ..|.|||||.|||||.||.|||.|.|||||.||.|| ||| ||.|||||.
BL02735___ypr    606 CCGCCGCCTTTGGAAGCATAAATTTGACCGCGTTTC-CTTAGGGACGGTG    654

BSNT_03306___    655 GAAAAAGAGGAGCTCGGCATCCGCAGG--CTAGAAGACACACCGGGCTAC    702
                     |||||.||.|||||.|||.| .|.|.|  || |||||.||.||||||||.
BL02735___ypr    655 GAAAAGGAAGAGCTGGGCGT-TGTAAGAACT-GAAGATACGCCGGGCTAT    702

BSNT_03306___    703 TTGGCGCCAATGCTTTACTTTCATTTTATCAAGGCGCAAGAGCCGG--AT    750
                     .|||||||.|||.|.||.|||||||||.|.||||.|.||..|||||  ||
BL02735___ypr    703 CTGGCGCCGATGATGTATTTTCATTTTTTAAAGGAGGAACGGCCGGAAAT    752

BSNT_03306___    751 CTTTTAAAAGGTGTCCTGCATCATAATGAAATGGATGTG-------TTAT    793
                     |.||  .||||.||..|||..||||||||..|.||.|||       |.||
BL02735___ypr    753 CATT--GAAGGCGTTTTGCGCCATAATGAGCTTGACGTGCTTTCTTTAAT    800

BSNT_03306___    794 CACTCATTTCATTGTACATCCATATGTCTAAAAAAATCCT--TTCAGAAT    841
                     |||||       |.|||||||||.|.||.||.||||||||  .||.|.|.
BL02735___ypr    801 CACTC-------TTTACATCCATTTATCGAAGAAAATCCTCACTCCGGAG    843

BSNT_03306___    842 C--ACATGCG---CCAAAAGAACACAGTGAAGCCTATGCTATGGCGAAAT    886
                     |  ||| |||   .||||.|||       |||  ||.||.|||||.||||
BL02735___ypr    844 CAGACA-GCGGAAGCAAACGAA-------AAG--TACGCGATGGCAAAAT    883

BSNT_03306___    887 GGTTTATGGCTCATAAA----GAAACGGACCAAGCGATGAAGCAGTTGGA    932
                     ||.|    .|||...||    ||.||.||.|..||||....|||.|||.|
BL02735___ypr    884 GGCT----CCTCGCCAACCGGGAGACAGAGCTTGCGACAGCGCAATTGCA    929

BSNT_03306___    933 AAGGCTTATAGAAAAATCGTTTGAGGACCAGGACA--GTGCACG-GC---    976
                     |..||||..|.|||||.|.|||||        |||  .||.||| ||   
BL02735___ypr    930 AGAGCTTGAAAAAAAACCTTTTGA--------ACATTCTGAACGCGCATC    971

BSNT_03306___    977 --TGGATTTATCGCTCCTGTACAAAAAACAAAATCGCTTG---GAAGAAG   1021
                       |.||||||||..|.|.|||.|||||||||   .||.||   .||||||
BL02735___ypr    972 ATTCGATTTATCCATGCAGTATAAAAAACAA---GGCATGCTAAAAGAAG   1018

BSNT_03306___   1022 CAG-TGCCGCTTTGG--GAAAAGCTGTCCCGCTCGCAAAA-CCAGAAGTG   1067
                     |.| .||| ||||||  |||          |||| ||||| ..|||||  
BL02735___ypr   1019 CCGCAGCC-CTTTGGCTGAA----------GCTC-CAAAATGGAGAAG--   1054

BSNT_03306___   1068 CAGGTACG----------CT-----GCTGTAATAGAGCTCGCGAAATATT   1102
                          |||          ||     ||.|..||.||.||.||.|||||.|
BL02735___ypr   1055 -----ACGGAAAAACCGCCTGGCGCGCAGGCATCGAACTTGCCAAATACT   1099

BSNT_03306___   1103 TTGAGCATAAGAAA--AAAAAATTCGGAAAAGC----ATTGCAAATAGCA   1146
                     ||||.||| .||||  ...|.||||||    ||    .||| |..||||.
BL02735___ypr   1100 TTGAACAT-CGAAAGCGGGATATTCGG----GCCGCTCTTG-AGGTAGCG   1143

BSNT_03306___   1147 GAGCAATTGCTTAGCGATGCGGCATGCTTATCAGAGAAAG-------AAA   1189
                     ||..|..||||    |..||.|||.|.||..||   ||||       ..|
BL02735___ypr   1144 GAAAACCTGCT----GGAGCAGCACGGTTCACA---AAAGTTTGAGCTGA   1186

BSNT_03306___   1190 CTGAAAAA--------CTGCAT-GTGAGAATTGCC-----CGGCTGAA--   1223
                     |.||||||        |.||.| .||||||  |.|     ||||||.|  
BL02735___ypr   1187 CCGAAAAAGAAATGGCCGGCCTCTTGAGAA--GGCGCGAGCGGCTGGAAA   1234

BSNT_03306___   1224 ---------GAGGAAATATTCC------------------------TCTT   1240
                              ||.||||||||||                        ||||
BL02735___ypr   1235 GGAAATACGGACGAAATATTCCCCGGGCAAGCGCAGAAAACGACGATCTT   1284

BSNT_03306___   1241 --AA--------------------------   1242
                       ||                          
BL02735___ypr   1285 CGAAAGCCAAACATTTCAAGCACGTTATGA   1314


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