Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03325 and BL02732

See Amino acid alignment / Visit BSNT_03325 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_03325___ponA.1.5803.seq
#    -bsequence dna-align/BL02732___ponA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03325___ponA-BL02732___ponA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03325___ponA-BL02732___ponA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03325___ponA
# 2: BL02732___ponA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2922
# Identity:    1937/2922 (66.3%)
# Similarity:  1937/2922 (66.3%)
# Gaps:         411/2922 (14.1%)
# Score: 6164.0
# 
#
#=======================================

BSNT_03325___      1 ATGTCAGATCAATTTAACAGCCGTGAAGCTCGACGAAAAGC---------     41
                     |||||||||||||||||||||||..|.|..||.||||||||         
BL02732___pon      1 ATGTCAGATCAATTTAACAGCCGCCAGGAACGGCGAAAAGCCCAGCAGGG     50

BSNT_03325___     42 GAACAGCAAGTC---GAGCCCTTCACCGAAAAAAGGCAAG-AAACGAAAA     87
                     .||.||||.|||   .|..|.|||      .|||..|||| |||.|||||
BL02732___pon     51 CAAAAGCAGGTCTAATACTCATTC------TAAACCCAAGAAAAAGAAAA     94

BSNT_03325___     88 AAGGGC-GGATTGTTTAAAAAGACCCTTTT---CACTTTACTCATTCTGT    133
                     ||  || |||||||||||.||.|..|||||   ||.||||.||| ||.| 
BL02732___pon     95 AA--GCAGGATTGTTTAAGAAAATTCTTTTATCCATTTTAATCA-TCGG-    140

BSNT_03325___    134 TTGTTTTAGGCGTAGTCGGCGGCGCTGTTACATTTGCCGTTATGGTTTCA    183
                      ||||.|.|||.|..|.|.|||.|..||.||.|||||.||.|||||..|.
BL02732___pon    141 -TGTTATCGGCTTGATTGCCGGGGGCGTCACTTTTGCGGTGATGGTAGCG    189

BSNT_03325___    184 GATGCGCCGTCCCTTGATGAAAGC-AAATTGAAGACGCCTTATTCATCAA    232
                     ||..||||||||||||||| |||| |||.|||||||.||.||.||.||.|
BL02732___pon    190 GACTCGCCGTCCCTTGATG-AAGCAAAACTGAAGACACCGTACTCTTCTA    238

BSNT_03325___    233 CGATTTATGATAAAAATGGAAAAGAGATCGCCGAAGTCGGCGCCGAAAAA    282
                     |.||.|||||.|||||.||||||||.|||||||||.||||..|.||||||
BL02732___pon    239 CCATCTATGACAAAAACGGAAAAGAAATCGCCGAAATCGGTTCGGAAAAA    288

BSNT_03325___    283 CGGACCTACGTCTCGATAGATGAAATTCCCGATGTTGTAAAAGAAGCCTT    332
                     |||||.|||||.|||||..|.||.||.||.|||...||.|||.|.||.||
BL02732___pon    289 CGGACGTACGTGTCGATTAAAGACATCCCGGATTCCGTCAAAAACGCATT    338

BSNT_03325___    333 TATCGCGACAGAAGACGCCCGTTTTTATGAGCACCACGGGATTGACCCTG    382
                     |.|.||.||.||||||||||||||.|||||.||||||||..|.|||||..
BL02732___pon    339 TCTTGCAACGGAAGACGCCCGTTTCTATGACCACCACGGCGTCGACCCGA    388

BSNT_03325___    383 TCCGTATCGGCGGTGCTTTAGTTGCCAACTTTAAAGACGGCTTCGGGGCT    432
                     ||||.|||||.||.||..|..|.||.|||||..|||.|||.||.||..||
BL02732___pon    389 TCCGGATCGGAGGAGCGCTTCTGGCAAACTTCGAAGGCGGATTTGGTTCT    438

BSNT_03325___    433 GAAGGCGGAAGTACGATCACCCAGCAGGTCGTCAAAAACTCCCTTCTTTC    482
                     ||||||||||||||||||||.||||||||||||||||||||||||||.||
BL02732___pon    439 GAAGGCGGAAGTACGATCACACAGCAGGTCGTCAAAAACTCCCTTCTGTC    488

BSNT_03325___    483 ACATCAGAAGACGTTGAAACGGAAGGTCCAGGAAGTATGGCTTTCAATTC    532
                     ||||.|.||.|||.||||||||||.|||||||||||.|||||.||..|.|
BL02732___pon    489 ACATGAAAAAACGCTGAAACGGAAAGTCCAGGAAGTCTGGCTGTCTTTCC    538

BSNT_03325___    533 AGCTGGAGCGCAATTACTCTAAAGATGAAATTTTAGAAATGTATTTAAAC    582
                     |||||||..|.||.|||||.|||||.||||||.|.||||||||||||||.
BL02732___pon    539 AGCTGGAAAGAAAATACTCAAAAGACGAAATTCTTGAAATGTATTTAAAT    588

BSNT_03325___    583 CGGATTTATTTTTCTCC-TAGAGCATACGGAATCGGAAAAGCGGCGGAAG    631
                     ||||||||.||.||.|| .|| ||.|||||..|||||||||||||.||..
BL02732___pon    589 CGGATTTACTTCTCGCCGCAG-GCCTACGGTGTCGGAAAAGCGGCTGAGC    637

BSNT_03325___    632 AATTTTTCGGCGTTACAGATTTAAGCAAATTGACTGTCGAACAGGCTGCC    681
                     |.||.|.|||.|||||||||.|||.|.|.||.||.|||||.|||||.||.
BL02732___pon    638 AGTTCTACGGGGTTACAGATCTAAACGACTTAACGGTCGAGCAGGCCGCA    687

BSNT_03325___    682 ACACTGGCAGGAATGCCGCAGAGCCCG-ACAGCGTACAATCCCG-TTAAA    729
                     ||.||.||.||.||||||||.|||||| |.|.| ||||| |||| |.|||
BL02732___pon    688 ACGCTTGCCGGCATGCCGCAAAGCCCGAATAAC-TACAA-CCCGATCAAA    735

BSNT_03325___    730 AACCCGGATAAAGCGGAAAAACGACGGAACATCGTACTCAGTCTGATGAA    779
                     .|.|||||.|||||.||.|||||.||.||..||||.||.||.||||||||
BL02732___pon    736 CATCCGGAAAAAGCCGAGAAACGGCGCAATGTCGTGCTGAGCCTGATGAA    785

BSNT_03325___    780 AAAGCAAGGATTTATTTCTGATTCTCAATATAACAAAGCGAAAAAAGTGG    829
                     .||.||.||.|||||.|||||..|..|.||.|||||||||||||||||.|
BL02732___pon    786 TAAACACGGCTTTATCTCTGACGCAGAGTACAACAAAGCGAAAAAAGTAG    835

BSNT_03325___    830 CAGTGA-AAGACGAAGGCGTCGTGTCACAGAAGGAATATGAAAAAGCAA-    877
                     |.||.| ||    |||||.|.||.||.|.|||.||.||.|.||||.||| 
BL02732___pon    836 CCGTCACAA----AAGGCCTTGTATCTCCGAAAGAGTACGCAAAAACAAC    881

BSNT_03325___    878 GTACAAACAAATACAGCGCATTTGTTGAAGAGGTTAT----GAAG-GAAA    922
                     || |.||||||||||||||.|||.|.||..|||...|    |||| ||||
BL02732___pon    882 GT-CCAACAAATACAGCGCGTTTATCGAGCAGGCCGTCGCCGAAGTGAAA    930

BSNT_03325___    923 TTGATGAAAAATCTGATGTCGATCCATCTG----CTGACGGATTAAAGAT    968
                          ||||||.|..|.|||..|||    |    |.||||||.|.|||||
BL02732___pon    931 -----GAAAAAGCGAACGTCACTCC----GGGAACGGACGGACTGAAGAT    971

BSNT_03325___    969 CTATACGAC-ATTAGATACAAAAGCACAAGATAAACTAGATGAATTAATG   1017
                     .||.||||| ||| ||||||.|.|||||.|||.|..|.|||||..|.|||
BL02732___pon    972 TTACACGACGATT-GATACAGACGCACAGGATTATGTGGATGAGCTGATG   1020

BSNT_03325___   1018 GACGGAGACACCGTCGGATT-----TACTGAAGGCATGCAGGGCGGTGTG   1062
                     |||||.||     |...|||     |||.|||...|||||||.|||..|.
BL02732___pon   1021 GACGGCGA-----TTCTATTCAGTATACCGAAAAAATGCAGGCCGGCCTC   1065

BSNT_03325___   1063 ACGCTTCTCGATACCAAAAACGGAGAAGTCCGAGCGATTGGTGCGGGACG   1112
                     ||.||.||||||||.||||.||||||..||||.|||.|.||.|..|||||
BL02732___pon   1066 ACCCTGCTCGATACGAAAACCGGAGAGATCCGCGCGCTCGGCGGCGGACG   1115

BSNT_03325___   1113 CAATC----AGCCTGTCGGAGGCTTTAACTATGC------TACTCAAAC-   1151
                     |.|.|    |||    .||.|.||||||||||||      |||| |||| 
BL02732___pon   1116 CGACCGGAAAGC----AGGCGACTTTAACTATGCAGTAGATACT-AAACG   1160

BSNT_03325___   1152 TAAGGCACAGCCTGGTTCGACCATAAAACCGATTTTGGACTACGGACCAG   1201
                     |      ||.||.|||||.||.||.||.||.||..|.||||||||.||.|
BL02732___pon   1161 T------CAACCCGGTTCAACGATTAAGCCAATCCTTGACTACGGCCCTG   1204

BSNT_03325___   1202 TTATTGAAAATAAGAAATGGTCCACATACGAACAAATT---GATGACTCA   1248
                     |.|||||.||.|||||||||||.||.||.|||||.|||   |||||   |
BL02732___pon   1205 TCATTGAGAACAAGAAATGGTCGACGTATGAACAGATTAAAGATGA---A   1251

BSNT_03325___   1249 GCTTATACGTATTCTAAC-GGAAAACCGATTCGTGATTGGGACCGCAAAT   1297
                     ||.||.|||||||| ||| |||.|.||||||            ..|||.|
BL02732___pon   1252 GCATACACGTATTC-AACTGGAGATCCGATT------------AACAACT   1288

BSNT_03325___   1298 AT--------CT--AGGGCCT--ATCTCAATGCGTTACGCTCTGGCCCAA   1335
                     ||        ||  ||.|.||  ||.||.|||.|..|.||.||||.|.|.
BL02732___pon   1289 ATGACAGAAGCTACAGAGGCTGGATATCGATGAGAGAGGCGCTGGTCGAT   1338

BSNT_03325___   1336 TCAAGAAATATACCTGCTTTAAAAGCATTCCAGGCAGTCGGTAAAGATAC   1385
                     ||..||||.||.||.|||||||||||.||||||||||.|||.|||||.|.
BL02732___pon   1339 TCTCGAAACATCCCGGCTTTAAAAGCGTTCCAGGCAGCCGGCAAAGACAA   1388

BSNT_03325___   1386 TGCTGTAGACTTTGCAAATGG--ACTCGGGCTTGG-TTTAACAAA-----   1427
                     |..||||.|.||||||   ||  ||     ||||| .||||||.|     
BL02732___pon   1389 TATTGTAAAATTTGCA---GGCAAC-----CTTGGCCTTAACATAAATTC   1430

BSNT_03325___   1428 AGATAATGTAACAGAGGCCTATTCTATTGGCGGTTTCGGTGGGAACGATG   1477
                     ||||.|..||...||.||.|||.|.||.|||||.|||    ||||  |||
BL02732___pon   1431 AGATGACTTAGTGGAAGCTTATGCAATCGGCGGCTTC----GGAA--ATG   1474

BSNT_03325___   1478 GTGTTTCTCCTCTGACAATGGCAGGTGCATACAGCGCGTTTGGAAATAAC   1527
                     ||||.||.||||||..||||||.||.||.||||||||.||.||.||.|||
BL02732___pon   1475 GTGTGTCGCCTCTGCAAATGGCCGGAGCGTACAGCGCCTTCGGCAACAAC   1524

BSNT_03325___   1528 GG-AACGTATAATGAACCGCATTTTGTAAAATCTATCGAATTTAACGATG   1576
                     || .|| ||.|||||.||||||..|||.|...|..|.|||||.||.||.|
BL02732___pon   1525 GGCTAC-TACAATGAGCCGCATACTGTTACCGCGGTGGAATTCAATGACG   1573

BSNT_03325___   1577 GCACGAAGCTTGACTTAACACCAAAATCAAAATCAGCCATGAGTGATTAT   1626
                     ||||.||||||||.||.||.||..|||||||..|.||||||||.||||||
BL02732___pon   1574 GCACTAAGCTTGATTTGACGCCTGAATCAAAGGCTGCCATGAGCGATTAT   1623

BSNT_03325___   1627 ACTGCGTTTATGATTACAGATATGCTGAAAACAGCTGTGAAGACAGGTAC   1676
                     ||.||.||||||||.||.|||||||||||||..|||||..||..|||.||
BL02732___pon   1624 ACCGCATTTATGATAACGGATATGCTGAAAAGCGCTGTTCAGCGAGGAAC   1673

BSNT_03325___   1677 TGG-ACAGCTTGCACAAGTACCTGGTGTAGAAGTTGCAGGAAAAACAGGA   1725
                     .|| ||||| .||.|||||.||.||.||....||.|||||.|||||.||.
BL02732___pon   1674 AGGAACAGC-GGCTCAAGTCCCCGGCGTCACTGTAGCAGGTAAAACGGGT   1722

BSNT_03325___   1726 ACGACTAACTTT------GATGATAATGAAGTCAAAA---GGTACAATAT   1766
                     |||||.||||||      ||.||.|.|  ||  ||||   ||.|.|| ||
BL02732___pon   1723 ACGACGAACTTTACCGAGGACGACATT--AG--AAAACACGGCATAA-AT   1767

BSNT_03325___   1767 CGCTAGCGGTGGCGCCCGAGATTCTTGGTTCGTTGGCTACACACCGCAAT   1816
                     ||..|    .||.||..|||||||.||||||||.|||||.||.|||||||
BL02732___pon   1768 CGAAA----CGGAGCGAGAGATTCATGGTTCGTCGGCTATACGCCGCAAT   1813

BSNT_03325___   1817 ATACAGCTGCCGTCTGGA-CGGGAATGGGAGAAAACGAGGCTGGAAAGAA   1865
                     ||||.||.||.||||||| |||.||    |||     |||||..||    
BL02732___pon   1814 ATACCGCAGCGGTCTGGACCGGTAA----AGA-----AGGCTTTAA----   1850

BSNT_03325___   1866 ATCACTTTCAGCTGA---AGAGCAAA----AAGTTGCAAAGCGCATCTTC   1908
                           ||| |||||   |||||.||    ||||.||.||||.|.|.|||
BL02732___pon   1851 ------TTC-GCTGAGCCAGAGCGAACAGCAAGTCGCCAAGCTCCTATTC   1893

BSNT_03325___   1909 GCCCAGCTCATCGCCGATGTCGATGACGGAAGCGGATCATTTGAGAAGCC   1958
                     ....|.||.||.|||.|.||.||..||||.|||||.||||||||.|||||
BL02732___pon   1894 AAAAAACTGATTGCCAAGGTGGACAACGGCAGCGGCTCATTTGAAAAGCC   1943

BSNT_03325___   1959 TGACAGCGTAGTGGAAGCCACCGTAGAAAAAGGTTCTAATCCGGCAAAAC   2008
                     |||||||||.||.|||||.|||||...||||||.||.||.||        
BL02732___pon   1944 TGACAGCGTCGTTGAAGCGACCGTTCTAAAAGGCTCGAACCC--------   1985

BSNT_03325___   2009 TGGCAGG-----GCCA-----AATACGCCAAGCGATAAGAAGCTCACAGA   2048
                       ||.||     ||||     ||.|||||.||||||||.||..||||.||
BL02732___pon   1986 --GCCGGTGCTCGCCAGCAGCAACACGCCTAGCGATAAAAAAGTCACTGA   2033

BSNT_03325___   2049 GTACTTTGTTAAAGGCACAGCTCCTTCTACTGTTTCTAAAACATATGAGA   2098
                     |||||||||.|||||||||...||..|.||.|||||.||||.||||    
BL02732___pon   2034 GTACTTTGTAAAAGGCACACAGCCGACGACCGTTTCGAAAAAATAT----   2079

BSNT_03325___   2099 AAGAAGAAAAAGAGGAAA--CAGCTAAACTGTCTGGTTTAAACGTGAAAT   2146
                       |||||||||||  |||  |.|..||.|.|||.|||||.|.||...|.|
BL02732___pon   2080 --GAAGAAAAAGA--AAATGCCGACAAGCCGTCAGGTTTGAGCGCAGAGT   2125

BSNT_03325___   2147 ACGAT--------AAAGACAATCAATCTTTAACGTTAAGCTGGAATTAC-   2187
                     |.|||        |||||..||.||.||||.|.|.|.|     .|||.| 
BL02732___pon   2126 ATGATGAAGCATCAAAGAGCATTAAGCTTTCATGGTCA-----TATTCCG   2170

BSNT_03325___   2188 --GACGGAGATGCGACCTTTGCTGTTAAGCAATCTGTTGACGGCGGCAGC   2235
                       |||||.||||...|||||...||.||.||.|||||||||||.|||.|.
BL02732___pon   2171 GAGACGGTGATGTATCCTTTAAAGTCAAACAGTCTGTTGACGGAGGCGGA   2220

BSNT_03325___   2236 TACTCGGAAATTCAAAACAGCTCTGCAAAAGAGGCAGTTATTTCGGGTGT   2285
                     |||...|||||||||||||||..|||.|||||.||.||.||..||..||.
BL02732___pon   2221 TACAGCGAAATTCAAAACAGCAGTGCGAAAGAAGCCGTCATACCGAATGC   2270

BSNT_03325___   2286 GCAGCCAGGATCTGTATACAAATTCGAAGTAACAGCCGTCAGTGATGATG   2335
                     ..|...||||||.||.||||.||||.||||.||.|||||.|..||.||||
BL02732___pon   2271 AAAAGAAGGATCCGTTTACAGATTCCAAGTCACTGCCGTTACCGAAGATG   2320

BSNT_03325___   2336 GCAAAAG---TACAGCTTC---CACATCTTATGAGGTGCCAA--AAGCTG   2377
                     |..||||   ..|.|||||   .|| .||||  |.||  |||  ..||||
BL02732___pon   2321 GTGAAAGCGACCCTGCTTCTGTAAC-GCTTA--AAGT--CAACGCGGCTG   2365

BSNT_03325___   2378 AAGACGATGAAGATAAAAAAGACCAG-CAACAAACGGATGATGAA---AA   2423
                     |.||.||||               || ||| |||||||.||||||   ||
BL02732___pon   2366 ATGAGGATG---------------AGTCAA-AAACGGACGATGAAAAGAA   2399

BSNT_03325___   2424 ACAAGATGATGAGAAGACTCAGGATGATACACAAACTGATGATTCTC---   2470
                     |.|.|||||.|||||||..|||||||         ||||||||..||   
BL02732___pon   2400 AGACGATGACGAGAAGAAGCAGGATG---------CTGATGATGATCAGG   2440

BSNT_03325___   2471 ---------AAAAAGATGACGG---------TCAGACG---GATCAAGAT   2499
                              ||.||.||.||||         ||||.||   ||||||.||
BL02732___pon   2441 ACAAAGACAAACAAAATAACGGCAATTCAAATCAGCCGAATGATCAAAAT   2490

BSNT_03325___   2500 CAGACAGATGATTCAACAAACGATCAAGACAA--AAAA--CAAGACAAT-   2544
                     |   |||...||||      |||||||.||||  ||||  |..|| ||| 
BL02732___pon   2491 C---CAGGAAATTC------CGATCAAAACAATCAAAATCCGGGA-AATT   2530

BSNT_03325___   2545 ---ACGAACACCAATCCGTCCGACAA-----------CAATAACCAAGAC   2580
                        ||.||.||.|   ||.|.||.||           |.||.|.||||||
BL02732___pon   2531 CAGACCAAAACAA---CGGCAGAAAAGATGATGACGCCGATGATCAAGAC   2577

BSNT_03325___   2581 --CAATCA----AACGATAATGATAACGACAACAGTAACAACCAGGAT-A   2623
                       |.||||    ||.|||||.|||||.|||||.|..||.||||.|||| |
BL02732___pon   2578 AACGATCAAAATAAAGATAAAGATAAAGACAAAAACAAAAACCCGGATCA   2627

BSNT_03325___   2624 CGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGAC   2673
                     .|.||          |.|||.|.|||.|       |||||          
BL02732___pon   2628 AGGCG----------CCAACACAGGTGA-------TCAAC----------   2650

BSNT_03325___   2674 ACGAATAAAAATAAAACAGACACATCTAATAAAACACAAACAAACTCATC   2723
                        ||..|||.|..|||.|.|| |||                ||| |..|
BL02732___pon   2651 ---AAACAAATTCCAACGGTCA-ATC----------------AAC-CGGC   2679

BSNT_03325___   2724 ATCCATTGAAAAAACAAATTAA   2745
                     |.|.|||||             
BL02732___pon   2680 ACCAATTGA-------------   2688


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