Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03325 and BL02732
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:01
# Commandline: needle
# -asequence dna-align/BSNT_03325___ponA.1.5803.seq
# -bsequence dna-align/BL02732___ponA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03325___ponA-BL02732___ponA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03325___ponA-BL02732___ponA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03325___ponA
# 2: BL02732___ponA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2922
# Identity: 1937/2922 (66.3%)
# Similarity: 1937/2922 (66.3%)
# Gaps: 411/2922 (14.1%)
# Score: 6164.0
#
#
#=======================================
BSNT_03325___ 1 ATGTCAGATCAATTTAACAGCCGTGAAGCTCGACGAAAAGC--------- 41
|||||||||||||||||||||||..|.|..||.||||||||
BL02732___pon 1 ATGTCAGATCAATTTAACAGCCGCCAGGAACGGCGAAAAGCCCAGCAGGG 50
BSNT_03325___ 42 GAACAGCAAGTC---GAGCCCTTCACCGAAAAAAGGCAAG-AAACGAAAA 87
.||.||||.||| .|..|.||| .|||..|||| |||.|||||
BL02732___pon 51 CAAAAGCAGGTCTAATACTCATTC------TAAACCCAAGAAAAAGAAAA 94
BSNT_03325___ 88 AAGGGC-GGATTGTTTAAAAAGACCCTTTT---CACTTTACTCATTCTGT 133
|| || |||||||||||.||.|..||||| ||.||||.||| ||.|
BL02732___pon 95 AA--GCAGGATTGTTTAAGAAAATTCTTTTATCCATTTTAATCA-TCGG- 140
BSNT_03325___ 134 TTGTTTTAGGCGTAGTCGGCGGCGCTGTTACATTTGCCGTTATGGTTTCA 183
||||.|.|||.|..|.|.|||.|..||.||.|||||.||.|||||..|.
BL02732___pon 141 -TGTTATCGGCTTGATTGCCGGGGGCGTCACTTTTGCGGTGATGGTAGCG 189
BSNT_03325___ 184 GATGCGCCGTCCCTTGATGAAAGC-AAATTGAAGACGCCTTATTCATCAA 232
||..||||||||||||||| |||| |||.|||||||.||.||.||.||.|
BL02732___pon 190 GACTCGCCGTCCCTTGATG-AAGCAAAACTGAAGACACCGTACTCTTCTA 238
BSNT_03325___ 233 CGATTTATGATAAAAATGGAAAAGAGATCGCCGAAGTCGGCGCCGAAAAA 282
|.||.|||||.|||||.||||||||.|||||||||.||||..|.||||||
BL02732___pon 239 CCATCTATGACAAAAACGGAAAAGAAATCGCCGAAATCGGTTCGGAAAAA 288
BSNT_03325___ 283 CGGACCTACGTCTCGATAGATGAAATTCCCGATGTTGTAAAAGAAGCCTT 332
|||||.|||||.|||||..|.||.||.||.|||...||.|||.|.||.||
BL02732___pon 289 CGGACGTACGTGTCGATTAAAGACATCCCGGATTCCGTCAAAAACGCATT 338
BSNT_03325___ 333 TATCGCGACAGAAGACGCCCGTTTTTATGAGCACCACGGGATTGACCCTG 382
|.|.||.||.||||||||||||||.|||||.||||||||..|.|||||..
BL02732___pon 339 TCTTGCAACGGAAGACGCCCGTTTCTATGACCACCACGGCGTCGACCCGA 388
BSNT_03325___ 383 TCCGTATCGGCGGTGCTTTAGTTGCCAACTTTAAAGACGGCTTCGGGGCT 432
||||.|||||.||.||..|..|.||.|||||..|||.|||.||.||..||
BL02732___pon 389 TCCGGATCGGAGGAGCGCTTCTGGCAAACTTCGAAGGCGGATTTGGTTCT 438
BSNT_03325___ 433 GAAGGCGGAAGTACGATCACCCAGCAGGTCGTCAAAAACTCCCTTCTTTC 482
||||||||||||||||||||.||||||||||||||||||||||||||.||
BL02732___pon 439 GAAGGCGGAAGTACGATCACACAGCAGGTCGTCAAAAACTCCCTTCTGTC 488
BSNT_03325___ 483 ACATCAGAAGACGTTGAAACGGAAGGTCCAGGAAGTATGGCTTTCAATTC 532
||||.|.||.|||.||||||||||.|||||||||||.|||||.||..|.|
BL02732___pon 489 ACATGAAAAAACGCTGAAACGGAAAGTCCAGGAAGTCTGGCTGTCTTTCC 538
BSNT_03325___ 533 AGCTGGAGCGCAATTACTCTAAAGATGAAATTTTAGAAATGTATTTAAAC 582
|||||||..|.||.|||||.|||||.||||||.|.||||||||||||||.
BL02732___pon 539 AGCTGGAAAGAAAATACTCAAAAGACGAAATTCTTGAAATGTATTTAAAT 588
BSNT_03325___ 583 CGGATTTATTTTTCTCC-TAGAGCATACGGAATCGGAAAAGCGGCGGAAG 631
||||||||.||.||.|| .|| ||.|||||..|||||||||||||.||..
BL02732___pon 589 CGGATTTACTTCTCGCCGCAG-GCCTACGGTGTCGGAAAAGCGGCTGAGC 637
BSNT_03325___ 632 AATTTTTCGGCGTTACAGATTTAAGCAAATTGACTGTCGAACAGGCTGCC 681
|.||.|.|||.|||||||||.|||.|.|.||.||.|||||.|||||.||.
BL02732___pon 638 AGTTCTACGGGGTTACAGATCTAAACGACTTAACGGTCGAGCAGGCCGCA 687
BSNT_03325___ 682 ACACTGGCAGGAATGCCGCAGAGCCCG-ACAGCGTACAATCCCG-TTAAA 729
||.||.||.||.||||||||.|||||| |.|.| ||||| |||| |.|||
BL02732___pon 688 ACGCTTGCCGGCATGCCGCAAAGCCCGAATAAC-TACAA-CCCGATCAAA 735
BSNT_03325___ 730 AACCCGGATAAAGCGGAAAAACGACGGAACATCGTACTCAGTCTGATGAA 779
.|.|||||.|||||.||.|||||.||.||..||||.||.||.||||||||
BL02732___pon 736 CATCCGGAAAAAGCCGAGAAACGGCGCAATGTCGTGCTGAGCCTGATGAA 785
BSNT_03325___ 780 AAAGCAAGGATTTATTTCTGATTCTCAATATAACAAAGCGAAAAAAGTGG 829
.||.||.||.|||||.|||||..|..|.||.|||||||||||||||||.|
BL02732___pon 786 TAAACACGGCTTTATCTCTGACGCAGAGTACAACAAAGCGAAAAAAGTAG 835
BSNT_03325___ 830 CAGTGA-AAGACGAAGGCGTCGTGTCACAGAAGGAATATGAAAAAGCAA- 877
|.||.| || |||||.|.||.||.|.|||.||.||.|.||||.|||
BL02732___pon 836 CCGTCACAA----AAGGCCTTGTATCTCCGAAAGAGTACGCAAAAACAAC 881
BSNT_03325___ 878 GTACAAACAAATACAGCGCATTTGTTGAAGAGGTTAT----GAAG-GAAA 922
|| |.||||||||||||||.|||.|.||..|||...| |||| ||||
BL02732___pon 882 GT-CCAACAAATACAGCGCGTTTATCGAGCAGGCCGTCGCCGAAGTGAAA 930
BSNT_03325___ 923 TTGATGAAAAATCTGATGTCGATCCATCTG----CTGACGGATTAAAGAT 968
||||||.|..|.|||..||| | |.||||||.|.|||||
BL02732___pon 931 -----GAAAAAGCGAACGTCACTCC----GGGAACGGACGGACTGAAGAT 971
BSNT_03325___ 969 CTATACGAC-ATTAGATACAAAAGCACAAGATAAACTAGATGAATTAATG 1017
.||.||||| ||| ||||||.|.|||||.|||.|..|.|||||..|.|||
BL02732___pon 972 TTACACGACGATT-GATACAGACGCACAGGATTATGTGGATGAGCTGATG 1020
BSNT_03325___ 1018 GACGGAGACACCGTCGGATT-----TACTGAAGGCATGCAGGGCGGTGTG 1062
|||||.|| |...||| |||.|||...|||||||.|||..|.
BL02732___pon 1021 GACGGCGA-----TTCTATTCAGTATACCGAAAAAATGCAGGCCGGCCTC 1065
BSNT_03325___ 1063 ACGCTTCTCGATACCAAAAACGGAGAAGTCCGAGCGATTGGTGCGGGACG 1112
||.||.||||||||.||||.||||||..||||.|||.|.||.|..|||||
BL02732___pon 1066 ACCCTGCTCGATACGAAAACCGGAGAGATCCGCGCGCTCGGCGGCGGACG 1115
BSNT_03325___ 1113 CAATC----AGCCTGTCGGAGGCTTTAACTATGC------TACTCAAAC- 1151
|.|.| ||| .||.|.|||||||||||| |||| ||||
BL02732___pon 1116 CGACCGGAAAGC----AGGCGACTTTAACTATGCAGTAGATACT-AAACG 1160
BSNT_03325___ 1152 TAAGGCACAGCCTGGTTCGACCATAAAACCGATTTTGGACTACGGACCAG 1201
| ||.||.|||||.||.||.||.||.||..|.||||||||.||.|
BL02732___pon 1161 T------CAACCCGGTTCAACGATTAAGCCAATCCTTGACTACGGCCCTG 1204
BSNT_03325___ 1202 TTATTGAAAATAAGAAATGGTCCACATACGAACAAATT---GATGACTCA 1248
|.|||||.||.|||||||||||.||.||.|||||.||| ||||| |
BL02732___pon 1205 TCATTGAGAACAAGAAATGGTCGACGTATGAACAGATTAAAGATGA---A 1251
BSNT_03325___ 1249 GCTTATACGTATTCTAAC-GGAAAACCGATTCGTGATTGGGACCGCAAAT 1297
||.||.|||||||| ||| |||.|.|||||| ..|||.|
BL02732___pon 1252 GCATACACGTATTC-AACTGGAGATCCGATT------------AACAACT 1288
BSNT_03325___ 1298 AT--------CT--AGGGCCT--ATCTCAATGCGTTACGCTCTGGCCCAA 1335
|| || ||.|.|| ||.||.|||.|..|.||.||||.|.|.
BL02732___pon 1289 ATGACAGAAGCTACAGAGGCTGGATATCGATGAGAGAGGCGCTGGTCGAT 1338
BSNT_03325___ 1336 TCAAGAAATATACCTGCTTTAAAAGCATTCCAGGCAGTCGGTAAAGATAC 1385
||..||||.||.||.|||||||||||.||||||||||.|||.|||||.|.
BL02732___pon 1339 TCTCGAAACATCCCGGCTTTAAAAGCGTTCCAGGCAGCCGGCAAAGACAA 1388
BSNT_03325___ 1386 TGCTGTAGACTTTGCAAATGG--ACTCGGGCTTGG-TTTAACAAA----- 1427
|..||||.|.|||||| || || ||||| .||||||.|
BL02732___pon 1389 TATTGTAAAATTTGCA---GGCAAC-----CTTGGCCTTAACATAAATTC 1430
BSNT_03325___ 1428 AGATAATGTAACAGAGGCCTATTCTATTGGCGGTTTCGGTGGGAACGATG 1477
||||.|..||...||.||.|||.|.||.|||||.||| |||| |||
BL02732___pon 1431 AGATGACTTAGTGGAAGCTTATGCAATCGGCGGCTTC----GGAA--ATG 1474
BSNT_03325___ 1478 GTGTTTCTCCTCTGACAATGGCAGGTGCATACAGCGCGTTTGGAAATAAC 1527
||||.||.||||||..||||||.||.||.||||||||.||.||.||.|||
BL02732___pon 1475 GTGTGTCGCCTCTGCAAATGGCCGGAGCGTACAGCGCCTTCGGCAACAAC 1524
BSNT_03325___ 1528 GG-AACGTATAATGAACCGCATTTTGTAAAATCTATCGAATTTAACGATG 1576
|| .|| ||.|||||.||||||..|||.|...|..|.|||||.||.||.|
BL02732___pon 1525 GGCTAC-TACAATGAGCCGCATACTGTTACCGCGGTGGAATTCAATGACG 1573
BSNT_03325___ 1577 GCACGAAGCTTGACTTAACACCAAAATCAAAATCAGCCATGAGTGATTAT 1626
||||.||||||||.||.||.||..|||||||..|.||||||||.||||||
BL02732___pon 1574 GCACTAAGCTTGATTTGACGCCTGAATCAAAGGCTGCCATGAGCGATTAT 1623
BSNT_03325___ 1627 ACTGCGTTTATGATTACAGATATGCTGAAAACAGCTGTGAAGACAGGTAC 1676
||.||.||||||||.||.|||||||||||||..|||||..||..|||.||
BL02732___pon 1624 ACCGCATTTATGATAACGGATATGCTGAAAAGCGCTGTTCAGCGAGGAAC 1673
BSNT_03325___ 1677 TGG-ACAGCTTGCACAAGTACCTGGTGTAGAAGTTGCAGGAAAAACAGGA 1725
.|| ||||| .||.|||||.||.||.||....||.|||||.|||||.||.
BL02732___pon 1674 AGGAACAGC-GGCTCAAGTCCCCGGCGTCACTGTAGCAGGTAAAACGGGT 1722
BSNT_03325___ 1726 ACGACTAACTTT------GATGATAATGAAGTCAAAA---GGTACAATAT 1766
|||||.|||||| ||.||.|.| || |||| ||.|.|| ||
BL02732___pon 1723 ACGACGAACTTTACCGAGGACGACATT--AG--AAAACACGGCATAA-AT 1767
BSNT_03325___ 1767 CGCTAGCGGTGGCGCCCGAGATTCTTGGTTCGTTGGCTACACACCGCAAT 1816
||..| .||.||..|||||||.||||||||.|||||.||.|||||||
BL02732___pon 1768 CGAAA----CGGAGCGAGAGATTCATGGTTCGTCGGCTATACGCCGCAAT 1813
BSNT_03325___ 1817 ATACAGCTGCCGTCTGGA-CGGGAATGGGAGAAAACGAGGCTGGAAAGAA 1865
||||.||.||.||||||| |||.|| ||| |||||..||
BL02732___pon 1814 ATACCGCAGCGGTCTGGACCGGTAA----AGA-----AGGCTTTAA---- 1850
BSNT_03325___ 1866 ATCACTTTCAGCTGA---AGAGCAAA----AAGTTGCAAAGCGCATCTTC 1908
||| ||||| |||||.|| ||||.||.||||.|.|.|||
BL02732___pon 1851 ------TTC-GCTGAGCCAGAGCGAACAGCAAGTCGCCAAGCTCCTATTC 1893
BSNT_03325___ 1909 GCCCAGCTCATCGCCGATGTCGATGACGGAAGCGGATCATTTGAGAAGCC 1958
....|.||.||.|||.|.||.||..||||.|||||.||||||||.|||||
BL02732___pon 1894 AAAAAACTGATTGCCAAGGTGGACAACGGCAGCGGCTCATTTGAAAAGCC 1943
BSNT_03325___ 1959 TGACAGCGTAGTGGAAGCCACCGTAGAAAAAGGTTCTAATCCGGCAAAAC 2008
|||||||||.||.|||||.|||||...||||||.||.||.||
BL02732___pon 1944 TGACAGCGTCGTTGAAGCGACCGTTCTAAAAGGCTCGAACCC-------- 1985
BSNT_03325___ 2009 TGGCAGG-----GCCA-----AATACGCCAAGCGATAAGAAGCTCACAGA 2048
||.|| |||| ||.|||||.||||||||.||..||||.||
BL02732___pon 1986 --GCCGGTGCTCGCCAGCAGCAACACGCCTAGCGATAAAAAAGTCACTGA 2033
BSNT_03325___ 2049 GTACTTTGTTAAAGGCACAGCTCCTTCTACTGTTTCTAAAACATATGAGA 2098
|||||||||.|||||||||...||..|.||.|||||.||||.||||
BL02732___pon 2034 GTACTTTGTAAAAGGCACACAGCCGACGACCGTTTCGAAAAAATAT---- 2079
BSNT_03325___ 2099 AAGAAGAAAAAGAGGAAA--CAGCTAAACTGTCTGGTTTAAACGTGAAAT 2146
||||||||||| ||| |.|..||.|.|||.|||||.|.||...|.|
BL02732___pon 2080 --GAAGAAAAAGA--AAATGCCGACAAGCCGTCAGGTTTGAGCGCAGAGT 2125
BSNT_03325___ 2147 ACGAT--------AAAGACAATCAATCTTTAACGTTAAGCTGGAATTAC- 2187
|.||| |||||..||.||.||||.|.|.|.| .|||.|
BL02732___pon 2126 ATGATGAAGCATCAAAGAGCATTAAGCTTTCATGGTCA-----TATTCCG 2170
BSNT_03325___ 2188 --GACGGAGATGCGACCTTTGCTGTTAAGCAATCTGTTGACGGCGGCAGC 2235
|||||.||||...|||||...||.||.||.|||||||||||.|||.|.
BL02732___pon 2171 GAGACGGTGATGTATCCTTTAAAGTCAAACAGTCTGTTGACGGAGGCGGA 2220
BSNT_03325___ 2236 TACTCGGAAATTCAAAACAGCTCTGCAAAAGAGGCAGTTATTTCGGGTGT 2285
|||...|||||||||||||||..|||.|||||.||.||.||..||..||.
BL02732___pon 2221 TACAGCGAAATTCAAAACAGCAGTGCGAAAGAAGCCGTCATACCGAATGC 2270
BSNT_03325___ 2286 GCAGCCAGGATCTGTATACAAATTCGAAGTAACAGCCGTCAGTGATGATG 2335
..|...||||||.||.||||.||||.||||.||.|||||.|..||.||||
BL02732___pon 2271 AAAAGAAGGATCCGTTTACAGATTCCAAGTCACTGCCGTTACCGAAGATG 2320
BSNT_03325___ 2336 GCAAAAG---TACAGCTTC---CACATCTTATGAGGTGCCAA--AAGCTG 2377
|..|||| ..|.||||| .|| .|||| |.|| ||| ..||||
BL02732___pon 2321 GTGAAAGCGACCCTGCTTCTGTAAC-GCTTA--AAGT--CAACGCGGCTG 2365
BSNT_03325___ 2378 AAGACGATGAAGATAAAAAAGACCAG-CAACAAACGGATGATGAA---AA 2423
|.||.|||| || ||| |||||||.|||||| ||
BL02732___pon 2366 ATGAGGATG---------------AGTCAA-AAACGGACGATGAAAAGAA 2399
BSNT_03325___ 2424 ACAAGATGATGAGAAGACTCAGGATGATACACAAACTGATGATTCTC--- 2470
|.|.|||||.|||||||..||||||| ||||||||..||
BL02732___pon 2400 AGACGATGACGAGAAGAAGCAGGATG---------CTGATGATGATCAGG 2440
BSNT_03325___ 2471 ---------AAAAAGATGACGG---------TCAGACG---GATCAAGAT 2499
||.||.||.|||| ||||.|| ||||||.||
BL02732___pon 2441 ACAAAGACAAACAAAATAACGGCAATTCAAATCAGCCGAATGATCAAAAT 2490
BSNT_03325___ 2500 CAGACAGATGATTCAACAAACGATCAAGACAA--AAAA--CAAGACAAT- 2544
| |||...|||| |||||||.|||| |||| |..|| |||
BL02732___pon 2491 C---CAGGAAATTC------CGATCAAAACAATCAAAATCCGGGA-AATT 2530
BSNT_03325___ 2545 ---ACGAACACCAATCCGTCCGACAA-----------CAATAACCAAGAC 2580
||.||.||.| ||.|.||.|| |.||.|.||||||
BL02732___pon 2531 CAGACCAAAACAA---CGGCAGAAAAGATGATGACGCCGATGATCAAGAC 2577
BSNT_03325___ 2581 --CAATCA----AACGATAATGATAACGACAACAGTAACAACCAGGAT-A 2623
|.|||| ||.|||||.|||||.|||||.|..||.||||.|||| |
BL02732___pon 2578 AACGATCAAAATAAAGATAAAGATAAAGACAAAAACAAAAACCCGGATCA 2627
BSNT_03325___ 2624 CGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGAC 2673
.|.|| |.|||.|.|||.| |||||
BL02732___pon 2628 AGGCG----------CCAACACAGGTGA-------TCAAC---------- 2650
BSNT_03325___ 2674 ACGAATAAAAATAAAACAGACACATCTAATAAAACACAAACAAACTCATC 2723
||..|||.|..|||.|.|| ||| ||| |..|
BL02732___pon 2651 ---AAACAAATTCCAACGGTCA-ATC----------------AAC-CGGC 2679
BSNT_03325___ 2724 ATCCATTGAAAAAACAAATTAA 2745
|.|.|||||
BL02732___pon 2680 ACCAATTGA------------- 2688
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