Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00315 and BL02715
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_00315___ybbC.1.5803.seq
# -bsequence dna-align/BL02715___ybbC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00315___ybbC-BL02715___ybbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00315___ybbC-BL02715___ybbC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00315___ybbC
# 2: BL02715___ybbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1293
# Identity: 873/1293 (67.5%)
# Similarity: 873/1293 (67.5%)
# Gaps: 111/1293 ( 8.6%)
# Score: 2769.5
#
#
#=======================================
BSNT_00315___ 1 ATGAGAAAAA---CAATATTCGCTTTTCTGACAGGGCT-CATGATG---- 42
|||.|||||| ||||.| |||| |.||.||
BL02715___ybb 1 ATGGGAAAAAAAGCAATCT---------------GGCTGCTTGCTGGAAT 35
BSNT_00315___ 43 -------TTCGGAACGATAACCGCTGCCTCTGCTTCACCCGATTCAAAGA 85
|||.|.||..|||||||.||..||||.|..||.|| ||||||
BL02715___ybb 36 GTTTGTCTTCAGTACACTAACCGCAGCAGCTGCCTTTCCGGA--CAAAGA 83
BSNT_00315___ 86 ATCAAACGGCTAAAAAGCCTAAAGTCCAGACC-GGTATAGACACGCTCTT 134
| .||||||| ||||..|..||| |||||.||...||||.|
BL02715___ybb 84 A---------AAAAAAGC--AAAGGTCTCACCGGGTATTGAAGTGCTCAT 122
BSNT_00315___ 135 GCCAGACTATAAAAAACAGC----TCAAGGGAAAACGCATCGGACTGATC 180
| |..|||||.||| |.||.||||||.|..||||.||.||.
BL02715___ybb 123 G-------AACAAAAAAAGCATATTAAAAGGAAAAAGGGTCGGTCTCATT 165
BSNT_00315___ 181 ACCAATCCAACCGGAGTAAA--CG-CATCTCTGAAAAGCAGTGTCGATAT 227
||.|||||||||||.||.|| || ||| |.|.||||||..|||||.|
BL02715___ybb 166 ACAAATCCAACCGGTGTCAATTCGACAT---TAACAAGCAGCATCGATTT 212
BSNT_00315___ 228 TCTTTACGAGAACCCAGATATCAAACTGACAGCTTTATTCGGCCCTGAAC 277
.|||.||.|...|||.|.|||..|.|||||.|||.|.|..||.||.||.|
BL02715___ybb 213 GCTTCACCAAGCCCCCGGTATTGAGCTGACCGCTCTCTATGGTCCAGAGC 262
BSNT_00315___ 278 ACGGCGTCCGCGGTGACGCCCAGGCTGGAGACGAAGTAGGCTCTTACATT 327
||||.||..|.||.|||||.||.||.||.|||.|.||.|.||||||.|||
BL02715___ybb 263 ACGGTGTAAGAGGAGACGCTCAAGCCGGTGACAAGGTTGACTCTTATATT 312
BSNT_00315___ 328 GACGAAAAAACCGGGGTACCCGTATACAGCCTCTACGGAAAAACGAAAAA 377
||.|||||||||||..|.|||||.|||||||||||||||.|.||||.|||
BL02715___ybb 313 GATGAAAAAACCGGTCTCCCCGTCTACAGCCTCTACGGAGATACGAGAAA 362
BSNT_00315___ 378 ACCGACTCCAGAAATGCTGAAAAATGTCGATATTCTTATGTTTGACATTC 427
.|||||.||.||.|||.|||||||.||.||..|.||..|.|||||.||.|
BL02715___ybb 363 GCCGACACCGGAGATGTTGAAAAACGTTGACGTCCTGCTATTTGATATCC 412
BSNT_00315___ 428 AGGATGTCGGGACCCGTTTCTACACGTACATTTATACAATGGCATACGCA 477
|.||||||||.||.||.||.|||||.||||||||.||.||||||||.||.
BL02715___ybb 413 AAGATGTCGGAACACGGTTTTACACTTACATTTACACTATGGCATATGCG 462
BSNT_00315___ 478 ATGGAAGCCGCTAAAGAAAACGGCATTCCATTTATGGTGTTGGACCGTCC 527
||||||||.||.||||||||.|..||||||||.||.||..|.|||||.||
BL02715___ybb 463 ATGGAAGCGGCAAAAGAAAATGATATTCCATTCATCGTCCTTGACCGCCC 512
BSNT_00315___ 528 GAATCCTCAAGGAGGGAATCATA-TTGAAGGACCAATCTTAGAACCTGAC 576
.||.||.||| .|.||..|.|.| |||||||.||..||.||||.||.||.
BL02715___ybb 513 AAACCCGCAA-AACGGCTTAAAAGTTGAAGGGCCTGTCCTAGATCCGGAT 561
BSNT_00315___ 577 TACGCCTCATTTGTCGGATTGTATCCCATTCCATTGAAG-CATGGGATGA 625
||..|.||||||||||||.|||||||| .|||.|..||| ||.||.||||
BL02715___ybb 562 TATTCTTCATTTGTCGGAATGTATCCC-GTCCCTCTAAGTCACGGAATGA 610
BSNT_00315___ 626 CGATAGGCGAATTGGCTTTACTGTTCAACAAAGAATTTAGTATTAATGCC 675
||..|||.||||||||....|||||.||..|.|||||||..||....|||
BL02715___ybb 611 CGGCAGGAGAATTGGCAAAGCTGTTTAATGATGAATTTAACATCGGAGCC 660
BSNT_00315___ 676 GATCTTACAGTGGTAAAAATGAAACACTGGAAGCGAAAAATGGATTTTGA 725
||.||.||.||..|||||||||||..|||||||||..|.|||...|||||
BL02715___ybb 661 GACCTAACCGTCATAAAAATGAAAGGCTGGAAGCGGCAGATGTTCTTTGA 710
BSNT_00315___ 726 CGATACCCGATTGCCTTTCGTCCTCCCTTCGCCTAACATGCCGACGGTGG 775
.||.|||.|..|.|||||||||||.|||||.||.||||||||||||..||
BL02715___ybb 711 AGACACCGGTCTTCCTTTCGTCCTGCCTTCCCCGAACATGCCGACGCCGG 760
BSNT_00315___ 776 A---AAGCACATTTGTTTATCCTGCAACCGGGCTGATTGAAGGAACAAAT 822
| .|||| |.||.||.||.|..||.||..|.|||||||||||.||.
BL02715___ybb 761 ATACGAGCA---TCGTCTACCCGGGCACAGGTTTAATTGAAGGAACCAAC 807
BSNT_00315___ 823 ATATCCGAAGGGCGAGGGACAACAAAGCCATTCGAATTGATCGGAGCTCC 872
||.||.||.||..|.||.||.|||||||||||.||||||||.||.||.||
BL02715___ybb 808 ATGTCAGAGGGAAGGGGCACGACAAAGCCATTTGAATTGATTGGTGCGCC 857
BSNT_00315___ 873 CTTTATCAAAAGCACAGAACTTGAAGAAACATTAAACAGCCTCCATTTGC 922
.|..||.|||||.||.||.||.|..||||.|||||||.|.||..|..|||
BL02715___ybb 858 TTACATGAAAAGTACGGAGCTCGCCGAAAAATTAAACGGTCTGAAGCTGC 907
BSNT_00315___ 923 CGGGCGTTACATTTAGGGCAGCATCCTTCACACCGACGTTTTCTAAACAT 972
|.|||||.|.|||.||.||.||.|||||||..|||||.|||||.||.|||
BL02715___ybb 908 CTGGCGTCAGATTCAGAGCCGCCTCCTTCAATCCGACATTTTCAAAGCAT 957
BSNT_00315___ 973 CAAGGA--ACGCTTTGCCACGGTGTGCAGCTCTATGTGACAGAAAGAGAT 1020
|| || |..||.||||||||.|||.||||.||.||||| .||.||.|
BL02715___ybb 958 CA--GAATAAACTGTGCCACGGGGTGGAGCTTTACGTGAC--CAACAGGT 1003
BSNT_00315___ 1021 AAG-TTTGAAGCC-GTTAAAACGGGTCTTTCAGTCATTAAAACCATACAC 1068
..| |||.||||| ||.||.||.|||.||.|..||||.||||||.|.||.
BL02715___ybb 1004 CCGCTTTTAAGCCTGTAAATACCGGTATTGCGATCATCAAAACCGTCCAT 1053
BSNT_00315___ 1069 GATCTCTATCCTGAGGATTTTGAGTTCCTGTCAACAGG----TTCATTCG 1114
||.|||||.||.||.||.|||||||||||..|..|||| ||||..||
BL02715___ybb 1054 GACCTCTACCCGGACGACTTTGAGTTCCTCCCTTCAGGCAATTTCAACCG 1103
BSNT_00315___ 1115 ATAAACTGGCAGGCAACGGCTGGATCAGGACAAAAATTGAAAATGGAACT 1164
.|||...||.|||||.|||.|||..||||..|||||..|.||..||
BL02715___ybb 1104 ----TCTGATCGGGAACGGATGGGTCAAAACAATGATTGAGCAAGGCGCT 1149
BSNT_00315___ 1165 TCGATTGA-GAACATC----ATAAACAGCTATGAA-------AAAACACT 1202
||.||||| ||| ||| |.||| ||.||| |||
BL02715___ybb 1150 TCAATTGATGAA-ATCGCCAAAAAA----TACGAAGCAGAGCAAA----- 1189
BSNT_00315___ 1203 CCAACAATTCAGCAAAACAAGAAAAAAATATCTCATTTATTAG 1245
|||..||.|..||.|..|||||.||.|||.|..||||||||
BL02715___ybb 1190 --AACGGTTTATGAATATCAGAAAGAAGTATTTGCTTTATTAG 1230
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