Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01249 and BL02712
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_01249___yfnB.1.5803.seq
# -bsequence dna-align/BL02712___yfnB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01249___yfnB-BL02712___yfnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01249___yfnB-BL02712___yfnB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01249___yfnB
# 2: BL02712___yfnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 729
# Identity: 522/729 (71.6%)
# Similarity: 522/729 (71.6%)
# Gaps: 30/729 ( 4.1%)
# Score: 1763.5
#
#
#=======================================
BSNT_01249___ 1 ATGAAACGATACCGCACTTTATTATTTGATGTAGATGATACCATCCTTGA 50
.|||||...||.||.||||||||.||||||||.||||||||..|..|.||
BL02712___yfn 1 GTGAAAAATTATCGTACTTTATTTTTTGATGTGGATGATACACTATTAGA 50
BSNT_01249___ 51 TTTTCAAGCGGCAGAAGCTTTAGCCCTGCGTTTGCTGTTTGAAGATCAGA 100
.||....|||||||||...|.|||..||||..||||.|||||.||.|||.
BL02712___yfn 51 CTTCGGTGCGGCAGAAAAGTCAGCATTGCGAATGCTTTTTGAGGAGCAGC 100
BSNT_01249___ 101 ACATTCCTTTAACAAATGACAT-GAAGGCGCAGTATAAAACCAGCAATCA 149
|.||||.|||.|||..|||.|| ||| |||.|.||||||...|.||||||
BL02712___yfn 101 AAATTCGTTTGACAGCTGAAATAGAA-GCGAATTATAAACGAATCAATCA 149
BSNT_01249___ 150 AGGTCTCTGGAGAGCCTTTGAAGAAGGTAAGAT-GACACGGGATGAAGTC 198
||||.|.|||||.|..||.|||.||||..|||| ||| ||.||..||||.
BL02712___yfn 150 AGGTTTATGGAGGGTGTTCGAAAAAGGGGAGATGGAC-CGCGACCAAGTG 198
BSNT_01249___ 199 GTAAACACACGTTTCTCCGCTTTGCTCAAGGAGTACGTTTACGAAGCGGA 248
||.||||||||.||.|||..|||..||||.||.||.|.|...||.||.||
BL02712___yfn 199 GTGAACACACGCTTTTCCCTTTTATTCAAAGAATATGGTCTTGAGGCTGA 248
BSNT_01249___ 249 CGGCGCTTTGCTTGAGCAAAAATACCGCCGCTTTCTTGAAGAAGGACATC 298
|||||.||||||||||.|.||.||.|||.||||.|||||||||||.||||
BL02712___yfn 249 CGGCGTTTTGCTTGAGAAGAAGTATCGCAGCTTCCTTGAAGAAGGGCATC 298
BSNT_01249___ 299 AGCTTATTGACGGTGCATTTGATCTCATCTCAAATCTGCAGCAACAGTTT 348
||||.||.|||||.||.|||||..|.|||..||..||||.|.|.||.|.|
BL02712___yfn 299 AGCTGATAGACGGCGCTTTTGAATTAATCAAAAGCCTGCGGGATCAATAT 348
BSNT_01249___ 349 GATTTGTACATCGTGACAAACGGCGTGTCTAACACACAATATAAGCGTCT 398
|||||.||.||||||||.|||||.||.||.||.||.||.||||||||.||
BL02712___yfn 349 GATTTATATATCGTGACGAACGGTGTTTCAAAAACGCAGTATAAGCGCCT 398
BSNT_01249___ 399 CCGTGATTCAGGATTATTTCC-ATTCTTCAAGGACATTTTCGTTTCTGAA 447
.|..|.|||||||||.|..|| ||..||.|||| .|||||.|||||.|||
BL02712___yfn 399 GCAAGCTTCAGGATTGTACCCGATGTTTAAAGG-GATTTTTGTTTCAGAA 447
BSNT_01249___ 448 GACACAGGCTTCCAAAAGCCGATGAAGGAATATTTCGATTACGTATTTGA 497
|||||.||.||.||||||||||||||.|||||.||.||||||||.|||||
BL02712___yfn 448 GACACCGGTTTTCAAAAGCCGATGAAAGAATACTTTGATTACGTTTTTGA 497
BSNT_01249___ 498 ACGGATTCCTCAATTTTCAGCAGAGCA----CACATTAATCATTGGGGAT 543
||||||||||||.|||||.|..||.|| | |.|||||.||||||
BL02712___yfn 498 ACGGATTCCTCATTTTTCTGTCGATCAGGGGC----TGATCATCGGGGAT 543
BSNT_01249___ 544 TCACTGACTGCTGATATCAAAGGCGGACAGCTCGCCGGACTTGACACTTG 593
|||.||||.||.||.||..||||.||.|.|||.||||||.|.||.||.||
BL02712___yfn 544 TCATTGACAGCGGACATAGAAGGGGGGCGGCTGGCCGGATTGGATACATG 593
BSNT_01249___ 594 TTGGATGAACCCTGACATGA-AGCCGAATGTGCCAGAGATCATACCAACC 642
.||||||||.||.|.||||| || |.||||...|.|..||..||||||||
BL02712___yfn 594 CTGGATGAATCCGGGCATGATAG-CAAATGACACTGGTATTGTACCAACC 642
BSNT_01249___ 643 TATGAGATTCGTAAGCTTGAAGAGCTATATCACATTTTGAATATCGAAAA 692
|||.|.||.|..||.|||||.|||.|.|||.|.|||||.||.||.|||||
BL02712___yfn 643 TATCAAATACAAAAACTTGATGAGTTGTATTATATTTTAAACATTGAAAA 692
BSNT_01249___ 693 TA-------CCGTCAGC------TCCTAA 708
| |||.|.|| |..|||
BL02712___yfn 693 -AGAATCGGCCGCCGGCCATTGTTTATAA 720
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