Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03889 and BL02710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_03889___aadK.1.5803.seq
# -bsequence dna-align/BL02710___aadK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03889___aadK-BL02710___aadK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03889___aadK-BL02710___aadK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03889___aadK
# 2: BL02710___aadK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity: 535/1018 (52.6%)
# Similarity: 535/1018 (52.6%)
# Gaps: 290/1018 (28.5%)
# Score: 1176.5
#
#
#=======================================
BSNT_03889___ 1 ATGCGAAGTGAGCAGGAAATGATGGACATTTTCTTGGACTTTGCTTTGAA 50
|||||.|..|||||||||||.||.|| .|||| ||| ||||
BL02710___aad 1 ATGCGTACAGAGCAGGAAATCATCGA------TTTGG----TGC--TGAA 38
BSNT_03889___ 51 CG----ATGAGAGAA--------TCCGATTGGTCACTTTGGAAGGGTCAC 88
.| |.|.|||.| ||.||..||||....||.|.||.||.|
BL02710___aad 39 GGTCGCACGGGAGGACAGCCGTGTCAGAGCGGTCGGCATGAACGGCTCGC 88
BSNT_03889___ 89 GTACAAACAGAAATATCCCTCCTGAC-------AACTTCC--AA------ 123
|.||.|||..|||..|||| .|.||| |||.||| ||
BL02710___aad 89 GGACGAACCCAAACGTCCC-GCGGACGAACCCAAACGTCCCGAAGGACCC 137
BSNT_03889___ 124 -------GATTATGACA-TCTCGTATTTTGTAACTGATGTAGAATCTTTT 165
||||||||.| |.|| |||.|||||||.|||.|..|.||||||
BL02710___aad 138 TTTTCGCGATTATGATATTGTC-TATGTTGTAACAGATATGCAGTCTTTT 186
BSNT_03889___ 166 AAAGAAAATGATCAG---TGGCTCGAAATCTTTGGGAAGCGCATTATGAT 212
...| ||||.|.| |||.|.||..|.|||||..||||.||.||.||
BL02710___aad 187 CTCG---ATGAGCCGGGCTGGGTGGACGTTTTTGGAGAGCGGATCATCAT 233
BSNT_03889___ 213 GCAAAAACCAGAAGATATGGAGCTTTTTCCTCCCGAAT----TAGGTAAT 258
|||.|..||.||||..||||||||.||| |||||| |.||.||.
BL02710___aad 234 GCAGACGCCGGAAGCGATGGAGCTGTTT----CCGAATGAGCTTGGCAAC 279
BSNT_03889___ 259 TGGTTTTCATACATCATTCTTTTTGAGGATGGCA-ACAAATTAGATCTAA 307
.|.|||||.||..|.||..|.|||...||.|||| .|..||| |||.|.|
BL02710___aad 280 CGCTTTTCGTATTTGATGTTATTTACAGACGGCAGCCGCATT-GATTTGA 328
BSNT_03889___ 308 CCCTTATTCCAATTCGTGAAGCAGAAGATTATTTTGCT--AATA------ 349
..|||.|.||..|| |||||..| ||| ||||
BL02710___aad 329 TTCTTGTGCCGCTT---------GAAGAAAA----GCTGGAATATAGCAG 365
BSNT_03889___ 350 --ACGATGGTTTG---GTTAAGGTCTTGCTCGATAAGGAT---------- 384
|.||.||.||| || |.||.||.|.|||||||||
BL02710___aad 366 GGAAGACGGCTTGACCGT---GATCCTGTTGGATAAGGATCAGGATCTGC 412
BSNT_03889___ 385 TCGTTCATCAACTATAAAGTGACC----CCAAATGATCGCCAATACTGGA 430
.|| ||||| || ||.|..|||||..||||.|||.
BL02710___aad 413 CCG-TCATC-------------CCGCCGCCGACGGATCGGGAATATTGGG 448
BSNT_03889___ 431 TGAAAAAGCCG--ACTGCAAGGGAATTTGATGATTGCTGTAATGAGTTCT 478
||.||||.||| .|.||||.| .||.|..||.|||||.|||||.||.|
BL02710___aad 449 TGCAAAAACCGTCCCCGCAATG--CTTCGCCGACTGCTGCAATGAATTTT 496
BSNT_03889___ 479 GGATGG-TTTCGACTTACGTAGTAAAAGGAC---TAGCAAGAAATGAAAT 524
|| ||| ..|||||.||.||.|..||||| | |.|| |..|.|||||
BL02710___aad 497 GG-TGGACATCGACATATGTGGCCAAAGG-CTTGTGGC--GGCAGGAAAT 542
BSNT_03889___ 525 CCTTTTTGCCATTGACCATTTAAATGAAATTGT-ACGTCCTAAT-TTATT 572
.||||.|||..|.||.||||||||| .|.|| |.|.|| || .|.||
BL02710___aad 543 TCTTTATGCACTCGATCATTTAAAT---CTCGTCAGGGCC--ATGCTGTT 587
BSNT_03889___ 573 GAGAATGATGGCCTGGCATATCGCATCTCAGAAA--GGGTATTCATTTAG 620
||.||||.|.|..|||.|..||| .||..|||| ||.|.|||..|.||
BL02710___aad 588 GAAAATGCTCGAATGGAAGGTCG--GCTTTGAAACGGGCTTTTCGCTGAG 635
BSNT_03889___ 621 TATGGGGAAGAACTATAAATTTATGAAGCGGTACCTT--TCAAATAAAGA 668
.||.||.||.||....||||||.||.|.||.||..|| |||||..|.|
BL02710___aad 636 CATAGGCAAAAATGCAAAATTTTTGGATCGCTATGTTGATCAAAATACG- 684
BSNT_03889___ 669 ATGGGAGGAA--CTCATGTCTACATATTCTG-----TGAAT------GGG 705
||||| || ||..||...||.|| ||.| |||.| |||
BL02710___aad 685 -TGGGA--AAGGCTTTTGGAGACGTA-TCCGCCAGCTGATTATAAGCGGG 730
BSNT_03889___ 706 TATCAGGAA-------------ATGTGGAAGTCTTTATTT---------- 732
||| |||| ||||||.|| .|.|||
BL02710___aad 731 TAT--GGAACAGTTTGTTTAAGATGTGGGAG---CTGTTTGAAGAGACAG 775
BSNT_03889___ 733 -------ACTTGCT----------ATG--CATTA---TTTAGAAAGTATT 760
|.||||| ||| ||.|| |||.|
BL02710___aad 776 CAGCAGCAGTTGCTGAACATCTGAATGAACAATACCTTTTCG-------- 817
BSNT_03889___ 761 CAAAAGCTGTATCAGAAAGTCTTGCATATCAGTATC-------------- 796
||.||||.| ||||||| ||.| |||||||
BL02710___aad 818 CAGAAGCGG----AGAAAGT----CAGA-CAGTATCTGAGGCGCGTTCAG 858
BSNT_03889___ 797 ---CTGATTAC--GATG--AAGGCA--TCACTAAGTATACGGAAGGTATT 837
|||| .|| |||| ||||.| |.|||||
BL02710___aad 859 CAGCTGA-AACCTGATGCAAAGGAAATTGACTAA---------------- 891
BSNT_03889___ 838 TATTGCTCAGTAAAGTGA 855
BL02710___aad 891 ------------------ 891
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