Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05850 and BL02707
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:56
# Commandline: needle
# -asequence dna-align/BSNT_05850___ywbO.1.5803.seq
# -bsequence dna-align/BL02707___ywbO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05850___ywbO-BL02707___ywbO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05850___ywbO-BL02707___ywbO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05850___ywbO
# 2: BL02707___ywbO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 688
# Identity: 435/688 (63.2%)
# Similarity: 435/688 (63.2%)
# Gaps: 128/688 (18.6%)
# Score: 1401.5
#
#
#=======================================
BSNT_05850___ 1 ATGACAGTACACATTAAAGTTTATTCAGATTACGTCTGCCCATTTTGTTT 50
||||||.||.|.||||||||.|||||.|||||.|||||.|||||.|||||
BL02707___ywb 1 ATGACAATAAATATTAAAGTATATTCCGATTATGTCTGTCCATTCTGTTT 50
BSNT_05850___ 51 TGTTGGAAAAG--CCGCTTTTGAAGAAGCGATAAAAGGAAAGGATGTTGA 98
|.|.||||||| |.|| |.|||.|||||||..||||.||.|||||.||
BL02707___ywb 51 TCTCGGAAAAGACCAGC--TCGAAAAAGCGATCGAAGGCAAAGATGTGGA 98
BSNT_05850___ 99 AGTCGAGTGGATGCCGTTTGAACTGCGCCCAAGTCCATCTCCTCAGCTTG 148
||||||||||.||||.||.||||||.|.||..|.|||||....|||||||
BL02707___ywb 99 AGTCGAGTGGCTGCCATTCGAACTGAGGCCGCGCCCATCGGAGCAGCTTG 148
BSNT_05850___ 149 ATCCGGTCAATGATCCTTCCAAACAGTACATGTGGCAGACATCG--ATTC 196
|||||.|.||.||.||..|||||..|...|||||| |||..|| |||.
BL02707___ywb 149 ATCCGTTAAACGACCCGGCCAAATTGGCGATGTGG--GACGGCGCCATTA 196
BSNT_05850___ 197 AGCC---AAT---GGC--GGAGAAATTAGGAGTCGAGATCAATTTTCCAA 238
|||| ||| ||| || ||.|||.|.||.||..|.||.|
BL02707___ywb 197 AGCCGCGAATCGAGGCTTGG--------GGCGTCAATATGAAGCTGCCGA 238
BSNT_05850___ 239 ACGTCTCGCCCCATCCGTATACAGACCTCGCGTTTGAAGGCTTCCATTTT 288
|||||||.||.|||||.||||||||.||.||...||||||||..||.||.
BL02707___ywb 239 ACGTCTCTCCGCATCCTTATACAGATCTGGCTCATGAAGGCTATCACTTC 288
BSNT_05850___ 289 GCGAAGGAATACAATAAAGGACATGAA----TACAACACCCGTGTCTTTC 334
||.||.|||.||..|||||| ||| |||||...|||.|| ||.|
BL02707___ywb 289 GCAAAAGAACACGGTAAAGG----GAAAGCGTACAATGACCGGGT-TTAC 333
BSNT_05850___ 335 -AGGCGTTTTTCCAAGAGGGCCAAAATATCGGCGACATTGACATCTTGAC 383
|.||||||||.||.||.|..||..|||||||||||||.|||.|.||.||
BL02707___ywb 334 AAAGCGTTTTTTCAGGAAGAGCAGGATATCGGCGACATCGACGTATTAAC 383
BSNT_05850___ 384 GAAGCTCGCCGAGGAAGTGGGATTAGACGGTG--CAT-CATTCAAATCAG 430
|..|||.|||.|.||||..|||.|.|| || ||| |.||.|||..||
BL02707___ywb 384 GTCGCTGGCCAAAGAAGCCGGACTGGA---TGAACATGCTTTTAAAGAAG 430
BSNT_05850___ 431 CACTGGAAA---CAAGAACATATCAGGACGTGCAGCGCCAAGC-CTTGAA 476
|..| || |||||||||||||||||||||||||..|.|| ||..||
BL02707___ywb 431 CTTT---AAGCGCAAGAACATATCAGGACGTGCAGCGGAAGGCGCTCCAA 477
BSNT_05850___ 477 GCACGCTTATGAAGAGGCTGACATCACAGCCGTTCCAACCTTTATTATCG 526
||||||||.|||||.||.|.||||||.||||||||.||.|||||.||||
BL02707___ywb 478 -CACGCTTACGAAGAAGCCGGCATCACGGCCGTTCCGACTTTTATCATCG 526
BSNT_05850___ 527 GCGACACTGTA----ATTCCAGGTGCTGCCGGC-AAGGATGTATTTGAAA 571
| ||.|| | |||.|.||.||.| |||| |||||.||.||||||.
BL02707___ywb 527 G---CAATG-AGCGGATTGCCGGAGCCG-CGGCGAAGGAAGTGTTTGAAC 571
BSNT_05850___ 572 AAGCGATTTCTGACGAGCAGAAGAAAAAGTAA------------------ 603
|.||||| .|||||||.||
BL02707___ywb 572 AGGCGAT--------------CGAAAAAGAAAGCAGACAAAAACCTGTTG 607
BSNT_05850___ 603 -------------------------------------- 603
BL02707___ywb 608 ACGGCTTGCAGTGCGATCTTGACGGAAACAACTGCTAA 645
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